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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025436 ID=TCONS_00025436|Name=TCONS_00025436|organism=Clytia hemisphaerica|type=transcript|length=5396bpRun BLAST on NCBI transcript from alignment at sc0000535:129703..169392- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025436 ID=TCONS_00025436|Name=TCONS_00025436|organism=Clytia hemisphaerica|type=transcript|length=39690bp|location=Sequence derived from alignment at sc0000535:129703..169392- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025436 vs. Swiss-Prot (Human)
Match: KCNC4 (Potassium voltage-gated channel subfamily C member 4 OS=Homo sapiens GN=KCNC4 PE=1 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 5.250e-56 Identity = 136/362 (37.57%), Postives = 200/362 (55.25%), Query Frame = 3
Query: 531 KELAFWGVDELMMEPCCWGTYTQHRDAHKNLSMFDDIHAQGXXXXXXXXXXXXXXXLMTSAPGRHKSKPYQQTVDHKSLWSQWLAFRPRLWAILEKPFSSVYAQVSAFISLVIILMSLTTFCAETVKYFE-----------------------EEKHIFGQLEYFYCAFFTLELLLRLWCCPSKKKYFKSAMTWIDIISTAQFYI----SFIADTHAFDXXXXXXXXXXXXXXXXXK---NLSGMQVIAQTLKASANELLLLCIIVFIPMVIFSTCVFYAEQ---------GQNNTKFPSIPETFWWAIITMTTVGYGDVTPDTLAGRIIGGLTACSGVLIVALPVSVIGSNFSLYYSYAQA 1499
+EL FWG+DE +EPCCW TY QHRDA + L +F+ G+ D +D L G P++ H + ++PR+WA+ E P+SS A+V AF SL IL+S+TTFC ET + F E + I +E +FTLE L+R+ CCP + K+ + ID ++ FY+ S ++ A DVL R++R R+ R FK + G++V+ TL+AS NE LLL I + + ++IF+T ++YAE+ G ++T F +IP FWWA++TMTT+GYGD+ P T +G ++G L A +GVL +A+PV VI +NF +YYS A A
Sbjct: 128 EELTFWGIDETDVEPCCWMTYRQHRDAEEALDIFESPDGGGSGAGPSDEAGDDERELALQRLG-----PHEGGAGHGAGSGGCRGWQPRMWALFEDPYSSRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEILRVGNITSVHFRREVETEPILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLSGLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 484 The following BLAST results are available for this feature:
BLAST of TCONS_00025436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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