TCONS_00025411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025411
Unique NameTCONS_00025411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025411 ID=TCONS_00025411|Name=TCONS_00025411|organism=Clytia hemisphaerica|type=transcript|length=285bp
GTTTCTAGCGACTTGAAGACGACCCGTAAAGATTTTCAAGCCGTTTGAGC
AGCTAGAGAAGGTAGAATTGCTGTTTTACTAACGGGCGGGAAGCAGGGCG
TCCATGGGCGaagcattaaaagcttaaaGTTAGGTAttttaaaacctaaa
attttctgcttattctttacttttatgaattgaaattttcagaggttGTT
CCAGAGAAGTTATACTTGactttaagccaaaaaaataaaaaaccaccAAA
AAAGTATCACTATTTTCAAACTCAGTGGATGGCCA
Run BLAST on NCBI

transcript from alignment at sc0000533:174689..174973

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025411 ID=TCONS_00025411|Name=TCONS_00025411|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at sc0000533:174689..174973 (Clytia hemisphaerica)
TGGCCATCCACTGAGTTTGAAAATAGTGATACTTTTTTggtggtttttta
tttttttggcttaaagtCAAGTATAACTTCTCTGGAACaacctctgaaaa
tttcaattcataaaagtaaagaataagcagaaaattttaggttttaaaaT
ACCTAACtttaagcttttaatgcttCGCCCATGGACGCCCTGCTTCCCGC
CCGTTAGTAAAACAGCAATTCTACCTTCTCTAGCTGCTCAAACGGCTTGA
AAATCTTTACGGGTCGTCTTCAAGTCGCTAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014272XLOC_014272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025411-exon-sc0000533-1491911889:174689..174973TCONS_00025411-exon-sc0000533-1491911889:174689..174973Clytia hemisphaericaexon
TCONS_00025411-exon-sc0000533-1510915933:174689..174973TCONS_00025411-exon-sc0000533-1510915933:174689..174973Clytia hemisphaericaexon
TCONS_00025411-exon-sc0000533-1575043694:174689..174973TCONS_00025411-exon-sc0000533-1575043694:174689..174973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:174689..174973 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.580765	0	1.83256	4.29979	0.780992	1.18821	1.68707	3.24746	0.0605176	2.06317	0	1.07422	0	0	1.84032	2.08559	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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