TCONS_00025398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025398
Unique NameTCONS_00025398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025398 ID=TCONS_00025398|Name=TCONS_00025398|organism=Clytia hemisphaerica|type=transcript|length=644bp
CTTATGACATTTGAAAGCTTAGACTCCAGGTTGGGTAATATAACAATCCA
GAAGGATCAAGTATTTCAAGTGAACGCGCTCTAATAACAATTAGACCACA
CGCAATACCAGGATAAAGGTACATCAAAGacaTCGTCTACAAATGATGGC
ACCATTAGAAAAACGACATTACACTTCCTTTCTCATCAAAGATATTATTG
ATAATGTTGAAGAAGATGGGGCACAGGTTGGCACTGATACTCAAAACGAA
GAATTTGATGACGACGACGAATCGCTGACATCAGCACAATCCGAAGAATT
CGATGAACATCAAACAAATAGCAGCAATAGTATGACCACAGATGAAAGTT
CATCATACAACAATGAAGAGGATTCACCAACAGCTTCGGTTAATTCAAAC
AACAATAACATGGATATCAAACGTAAATATCCAAGAGAGAGAACAACATT
CACCATTGCTCAACTCAAATTCTTAGAAGAACTATTCtgtgtcaaaaaat
atttaacacTAATCGAACGCAGTAAAGTTGCACTGCATTTAGAGTTGAGC
GAACGTCAAGTTAAAACTTGGTTTCAAAACCGACGCACTAAATACCGACG
TCAAAAGACAGTAAATTCGCCCGTTTTATCATTATCGGTTGAAA
Run BLAST on NCBI

transcript from alignment at sc0000533:124053..125714-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025398 ID=TCONS_00025398|Name=TCONS_00025398|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at sc0000533:124053..125714- (Clytia hemisphaerica)
CTTATGACATTTGAAAGCTTAGACTCCAGGTTGGGTAATATAACAATCCA
GAAGGATCAAGTATTTCAAGTGAACGCGCTCTAATAACAATTAGACCACA
CGCAATACCAGGATAAAGGTACATCAAAGGTAAGTTATAATTATTTTCAG
GATGCATCCTGATGTTTTTTATTTTTTTCCAAGTAGGTATGCAAATACTC
AGGACCCTACTTGTCACCAAATTTCTTGAAGGTCTTCGGCAAAAGATATT
TCATTTGCAACCAACTGTACCTTAGGTTAGAAGATGCTATCGTCCGTTTA
CTGATCAGTAAACGCAAGAAAGTATGTGCGCAGAGTCAGGGCGTCAGAGT
GGTTTACGGGAAAAATAGTGGCGGTAGAGTTTTGGAACACCCTGTAAACA
CCTCCATCACTGTTTACTCTGCCCCGAACTAAACTCGTTTTCAAATTTAT
CCCGCTTCTAACTGAATTATCCCCTTTTTCAGTGATAATGTGCAGACGAT
AGGATCGTCTACCCTAGGTATTAGTCTTTGAAAGTTTTTCACTCTTCTGT
TTTCCTACATAACTAAAGTTTAGCAGTAAGGACATTCTACTCATTCTTTT
ACAATAGCCCGATACTTCAAATAGTCGATCGCTTCCTCATTCTACTTTTT
TTTCGCTGCAAGATTTGATAAGTACAGTTGACTCTTTCTAGTTCGATCTT
CGAGGGATACCAAAAATTCGAACTAGAGAGAGATTATTTTACGTGGCTTG
CCCTTTGACGGGAACTTAGAATCAGTTTGAATTAGAGAAAGATTCGAATA
ATAGAAGTTCAAATTAGTGAGAGTTCACAGTAAACTCATGAAAACTTTTT
TTATTTTCAAGACATCGTCTACAAATGATGGCACCATTAGAAAAACGACA
TTACACTTCCTTTCTCATCAAAGATATTATTGATAATGTTGAAGAAGATG
GGGCACAGGTTGGCACTGATACTCAAAACGAAGGTAAATGCTTTTCTTCT
AACTCTATATCCAAAGAGATTCCATGACTTTTTTGACCAAGATTCCAATC
ATGACAACCTGTCTTCTTCATAATTTTGTACATATAATTCATATCTTGCC
AGAGTCCAGAATGCTTGTACAAATTTGTGCTCTCCTTTATACTATCTCTA
GCTTTCTTCTTTTTGACACACAAAAAAGTTTCACTGTCTATCAAGAAAAT
TTGAGCTTTGCTTTTTTTAAATATCGTCCAAGGTGAATCTTAACTCTCTA
ATTTTTTTACGGGGTATAGAATTTGATGACGACGACGAATCGCTGACATC
AGCACAATCCGAAGAATTCGATGAACATCAAACAAATAGCAGCAATAGTA
TGACCACAGATGAAAGTTCATCATACAACAATGAAGAGGATTCACCAACA
GCTTCGGTTAATTCAAACAACAATAACATGGATATCAAACGTAAATATCC
AAGAGAGAGAACAACATTCACCATTGCTCAACTCAAATTCTTAGAAGAAC
TATTCTGTGTCAAAAAATATTTAACACTAATCGAACGCAGTAAAGTTGCA
CTGCATTTAGAGTTGAGCGAACGTCAAGTTAAAACTTGGTTTCAAAACCG
ACGCACTAAATACCGACGTCAAAAGACAGTAAATTCGCCCGTTTTATCAT
TATCGGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014264XLOC_014264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025398-exon-sc0000533-1575043694:125586..125714TCONS_00025398-exon-sc0000533-1575043694:125586..125714Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1575043694:124732..124853TCONS_00025398-exon-sc0000533-1575043694:124732..124853Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1575043694:124053..124445TCONS_00025398-exon-sc0000533-1575043694:124053..124445Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1510915933:125586..125714TCONS_00025398-exon-sc0000533-1510915933:125586..125714Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1510915933:124732..124853TCONS_00025398-exon-sc0000533-1510915933:124732..124853Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1510915933:124053..124445TCONS_00025398-exon-sc0000533-1510915933:124053..124445Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1491911889:125586..125714TCONS_00025398-exon-sc0000533-1491911889:125586..125714Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1491911889:124732..124853TCONS_00025398-exon-sc0000533-1491911889:124732..124853Clytia hemisphaericaexon
TCONS_00025398-exon-sc0000533-1491911889:124053..124445TCONS_00025398-exon-sc0000533-1491911889:124053..124445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:124053..125714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188391	0.0718771	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.40673	2.50898	0	0	0	0.693488	0.166498	0.905088	1.08807	0.762116	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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