TCONS_00025394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025394
Unique NameTCONS_00025394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025394 ID=TCONS_00025394|Name=TCONS_00025394|organism=Clytia hemisphaerica|type=transcript|length=874bp
TATCAATCTACGACGAGGTGTTGAGCTAAATGGTCAATCTCAAGAATGCA
GTTGTATTGGAAATTTACTTTCTTGACTTTAAGTCTCCGCATCGTCATTG
TAGCATCTGAGAAGGATTATCGGGAAGAAATTCAGAGCAATTTAACACCC
AAGTCTCACACACTGATAGAAAAAGATACCACAGAATATCTATCTCAATC
AGAAGCAGACGGAATCGCCAGAGGACCATGTTTTGGAGTCACCAAACTTC
GCAACCTGACAAATATAAAAGACATACGTTTTCGTAAACGATGTCGACGA
TTCTTAAAACGTTGTTTTTCGGTTAAAAAGTGGATTGATATTAAAAAGAG
GTTCAGAAACAAAAACTTGCAGCAGCAATGCAGGAAAATGTTGAGaggaa
ggaaagaaaaaaacaatgcaaaacctgtcaaaatatcaaaatcaaatgtA
TCTAGCACCTCGATGACAAAATTAACAGGTCGTACAGATTCCATTACAAC
CATACAAACCTCAAAGCCAGAATCGATATCGGTCACATCAACGGCAGCTG
TACCAACATCCACTCCTAAATCCATCGAGATGGCTTCAATCGAAGTGTCC
ATAGCAACAATACCTCCACCAAGAGCCATAGCAACCGATCTTTTTGCTGA
AGGGCAGCGAACAGTAaatcaatgttattttttgGCACATGATGAGCAGG
GCACGTTATGTGTTACAGAAAACAATTGCATTACATACACCTATCCAATC
TTTGAATTACACTGCGTGTAAATAAACATATGTTAAACTGTATATGGTGC
GTGCTATAGGAGTAGGTGATTTATAGTAATATAGAATGTTACAAGAATAT
ATAATAGCAAtggaatggaaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00025394-protein

>TCONS_00025394-protein ID=TCONS_00025394-protein|Name=TCONS_00025394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MQLYWKFTFLTLSLRIVIVASEKDYREEIQSNLTPKSHTLIEKDTTEYLS
QSEADGIARGPCFGVTKLRNLTNIKDIRFRKRCRRFLKRCFSVKKWIDIK
KRFRNKNLQQQCRKMLRGRKEKNNAKPVKISKSNVSSTSMTKLTGRTDSI
TTIQTSKPESISVTSTAAVPTSTPKSIEMASIEVSIATIPPPRAIATDLF
AEGQRTVNQCYFLAHDEQGTLCVTENNCITYTYPIFELHCV
Run BLAST on NCBI

transcript from alignment at sc0000533:98608..100523-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025394 ID=TCONS_00025394|Name=TCONS_00025394|organism=Clytia hemisphaerica|type=transcript|length=1916bp|location=Sequence derived from alignment at sc0000533:98608..100523- (Clytia hemisphaerica)
TATCAATCTACGACGAGGTGTTGAGCTAAATGGTCAATCTCAAGAATGCA
GTTGTATTGGAAATTTACTTTCTTGACTTTAAGTCTCCGCATCGTCATTG
TAGCATCTGAGAAGGATTATCGGGAAGAAATTCAGAGCAATTTAACACCC
AAGTCTCACACACTGATAGAAAAAGATACCACAGAATATCTATCTCAATC
AGAAGCAGACGGAATCGCCAGAGGACCATGTTTTGGAGTCACCAAACTTC
GCAACCTGACAAATATAAAAGACATACGTTTTCGTAAACGATGTCGACGA
TTCTTAAAACGTTGTTTTTCGGTTAAAAAGTGGATTGATATTAAAAAGAG
GTTCAGAAACAAAAACTTGCAGCAGCAATGCAGGAAAATGTTGAGAGGAA
GGAAAGAAAAAAACAATGCAAAACCTGTCAAAATATCAAAATCAAATGTA
TCTAGCACCTCGATGACAAAATTAACAGGTCGTACAGATTCCATTACAAC
CATACAAACCTCAAAGCCAGAATCGATATCGGTCACATCAACGGCAGCTG
TACCAACATCCACTCCTAAATCCATCGAGATGGCTTCAATCGAAGTGTCC
ATAGCAACAATACCTCCACCAAGAGCCATAGCAACCGATCTTTTTGCTGA
AGGGCAGCGAACAGTAAATCAATGTTATTTTTTGGCACATGATGAGCAGG
GCACGTTATGTGTTACAGAAAACAATTGCATTACATACTCCTATCCAATC
TTTGAAATGCACTGCGTGTAGATAAACATATGTTAAACTGTATATGGTGC
GTGCTATAGGAGTAGGTGATTTATAGTAATATATAGAATGTTACAAGAAT
ATATAATATCAATGGAATGGAAAAAAATATTGAAATTTAAGTATGGTGAC
CAAAGATTTCTTGAATTCCTCTAGGGTTGGGATTCTAGTAAAAAATAAGA
TCCTAGCTTGGCTAATATGTGAGAGTTCTACTGTAGTACGTCAAAATCTG
ATAATTTCTAGGACATGCATAAAGTTAAAATTCGAAATCCCGGTATATGG
CATATGTTCCGATGTAGCCCACCGGTCATTTGCTAAAATAGTTCTCTCCG
AAATGAGAAATCTCTCAAATCTGTTTTTTTTATCATTACTGCTCCGACAT
GTTCAGTCCTGGGAAAAATTAGTTTTCTTAAATTCAAAATTCGAAATATT
GGAAATAATCGGTGTAAATTAGGCATTGATTGACCGTCAAGTTGTCGATT
CAAGATCGCGATCTCTCGAAAAATTATAATCTTTAAAATGATTCGCAATT
TAAATAGAAAATTGAGATAATTATATTCTCTCAATTATTAAGTATTAAAT
ATTGCTCCACAATTTATTGATTTTTTATTGTGTGAAAAGGGGAATATTTC
ACGTGAGAAAATTTTAGTTGAGGTCATACTTTTCACATTGAATATTGCTC
TTCTTAATAGATAAATTAAAGTGAAAATCAGAACTTTCTTAGTTTTAATC
AGTCAAAGGACATACTACGAGGAGCCGAACTGAAAGGTTGATCTCAAAAA
TGCAGTTCTATTGGAAATTTACTTTTTTAATCTTAATAATCGCCATTGTA
ACGTCCGAGTCTAATCGTCCAATCGAAGTGTCCATGGCAACATTACCCCC
ATCAAGAGCAAAAGCAATCGATCAAGCAATGACTGGAGACAAGCAACAAC
GAAAGATAGATGATTGTTATCTTTTGGCACATGATGAGCAGGGCACGTTA
TGTGTTATAGAAAACAATTGCATTACATACACCTATCCAATCTTTGAATT
ACACTGCGTGTAAATAAACATATGTTAAACTGTATATGGTGCGTGCTATA
GGAGTAGGTGATTTATAGTAATATAGAATGTTACAAGAATATATAATAGC
AATGGAATGGAAAAAA

Coding sequence (CDS) from alignment at sc0000533:98608..100523-

>TCONS_00025394 ID=TCONS_00025394|Name=TCONS_00025394|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000533:98608..100523- (Clytia hemisphaerica)
ATACACCTATCCAATCTTTGAATTACACTGCGTGTAAATGCAGTTGTATT
GGAAATTTACTTTCTTGACTTTAAGTCTCCGCATCGTCATTGTAGCATCT
GAGAAGGATTATCGGGAAGAAATTCAGAGCAATTTAACACCCAAGTCTCA
CACACTGATAGAAAAAGATACCACAGAATATCTATCTCAATCAGAAGCAG
ACGGAATCGCCAGAGGACCATGTTTTGGAGTCACCAAACTTCGCAACCTG
ACAAATATAAAAGACATACGTTTTCGTAAACGATGTCGACGATTCTTAAA
ACGTTGTTTTTCGGTTAAAAAGTGGATTGATATTAAAAAGAGGTTCAGAA
ACAAAAACTTGCAGCAGCAATGCAGGAAAATGTTGAGAGGAAGGAAAGAA
AAAAACAATGCAAAACCTGTCAAAATATCAAAATCAAATGTATCTAGCAC
CTCGATGACAAAATTAACAGGTCGTACAGATTCCATTACAACCATACAAA
CCTCAAAGCCAGAATCGATATCGGTCACATCAACGGCAGCTGTACCAACA
TCCACTCCTAAATCCATCGAGATGGCTTCAATCGAAGTGTCCATAGCAAC
AATACCTCCACCAAGAGCCATAGCAACCGATCTTTTTGCTGAAGGGCAGC
GAACAGTAAATCAATGTTATTTTTTGGCACATGATGAGCAGGGCACGTTA
TGTGTTACAGAAAACAATTGCATTACATACACCTATCCAATCTTTGAATT
ACACTGCGTGTAAATGCAGTTGTATTGGAAATTTACTTTCTTGACTTTAA
GTCTCCGCATCGTCATTGTAGCATCTGAGAAGGATTATCGGGAAGAAATT
CAGAGCAATTTAACACCCAAGTCTCACACACTGATAGAAAAAGATACCAC
AGAATATCTATCTCAATCAGAAGCAGACGGAATCGCCAGAGGACCATGTT
TTGGAGTCACCAAACTTCGCAACCTGACAAATATAAAAGACATACGTTTT
CGTAAACGATGTCGACGATTCTTAAAACGTTGTTTTTCGGTTAAAAAGTG
GATTGATATTAAAAAGAGGTTCAGAAACAAAAACTTGCAGCAGCAATGCA
GGAAAATGTTGAGAGGAAGGAAAGAAAAAAACAATGCAAAACCTGTCAAA
ATATCAAAATCAAATGTATCTAGCACCTCGATGACAAAATTAACAGGTCG
TACAGATTCCATTACAACCATACAAACCTCAAAGCCAGAATCGATATCGG
TCACATCAACGGCAGCTGTACCAACATCCACTCCTAAATCCATCGAGATG
GCTTCAATCGAAGTGTCCATAGCAACAATACCTCCACCAAGAGCCATAGC
AACCGATCTTTTTGCTGAAGGGCAGCGAACAGTAAATCAATGTTATTTTT
TGGCACATGATGAGCAGGGCACGTTATGTGTTACAGAAAACAATTGCATT
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014262XLOC_014262Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025394-proteinTCONS_00025394-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025394-exon-sc0000533-1575043694:99790..100523TCONS_00025394-exon-sc0000533-1575043694:99790..100523Clytia hemisphaericaexon
TCONS_00025394-exon-sc0000533-1575043694:98608..98747TCONS_00025394-exon-sc0000533-1575043694:98608..98747Clytia hemisphaericaexon
TCONS_00025394-exon-sc0000533-1510915933:99790..100523TCONS_00025394-exon-sc0000533-1510915933:99790..100523Clytia hemisphaericaexon
TCONS_00025394-exon-sc0000533-1510915933:98608..98747TCONS_00025394-exon-sc0000533-1510915933:98608..98747Clytia hemisphaericaexon
TCONS_00025394-exon-sc0000533-1491911889:99790..100523TCONS_00025394-exon-sc0000533-1491911889:99790..100523Clytia hemisphaericaexon
TCONS_00025394-exon-sc0000533-1491911889:98608..98747TCONS_00025394-exon-sc0000533-1491911889:98608..98747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:98608..100523 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0520246	0	0	0.309231	0.113705	9.6328	7.77427	6.13475	5.77008	3.26168	4.61978	0	0.147391	0.121176	0	0	0	0	0	0	0	0	0	0.229118	0.102241	0	0.0780713	0.0803237	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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