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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025389 ID=TCONS_00025389|Name=TCONS_00025389|organism=Clytia hemisphaerica|type=transcript|length=1396bp
aCCCACCCCCAAGGGGAGAATCAAAAATGAGTCCCCTCCCTGTCGATTCT
TTGAAGCTTTATAAATGAATGGACATGACTTTTTGATGACTTGGTCCGTG
GGTCGTGGGTTTCGGCAGGGGGATTAAATAATTCTCCAATTTAGCTCTGC
AAATCCTTAACTGGAGGTTTTATAGCCCTGACATTATTTTAAAGCTGGTT
TATTCTGGAGATATCTTTCTGCAGGGAAACCATTAATTCAGTCCatcttt
taactgtttttaacGCTGGGGAAACGAAAAGAACCCCAGGATAAAttctt
tgtttcttataaaaaataagcaCAGGTGTCAGAAAAAAGGTTATTGTAGA
AAGGGCACTGTGGGTTAGCTTTGTTGTTCCCCCAGTTCAAAAGTCTTTTA
CGTCAAATTAATGTGAATGTTTTATTATGCTATTAGCAAAACAACAAAAG
ACCCATCGCTTCGAAATGTTTGATTCATTTTcaataaacaattttttctc
AAGTTCTCCACCGTTGGTGCTATTTCTTTCTTtccatgtttgttttgatt
tctcttTGAATGTGAATCTCTGCGGTGGAGTTTTTCTTTTTGCAACATTC
TATTTCCACGCGGCGAGACTACAAACTTTCAACTCTCACACCATTCAGAA
AATGGAATGTGAGTGGAGTGTGGTGGTTTGTTTTTGGTGGGAAATTTGgt
tgttggaaaatttttgttatatttttttgattCTGCCCTTTTTTCAAACG
CTTCCCTgtttactattttagaatttatgcTCCCCGGTTAcATAAGTTCG
ATAAATCGCGTAGAAAGTTTCAGCTTGAACAAAAGAGCTctggtcttttt
ttttttaatctttaccTTGTAGTTTTATATATACtatttattttgtaaaa
gctgGTAAGGTTGCAGGGGCTTGATTTTTATTGAATGAAATTCGGAACAA
TGGTCTGTGTCTACGATAGGCACAGTAAAGAGAGATTCTCCGCGTTTTTT
TCTTCCTCTGGTAAAACgtctttaaaactgaaaacttgagcaaatctTTG
TGAGATGGGGCTTTTCTGGTCTGCTTTTCTTATCTACTTTgccatttctt
tgaaaataatttaaattgattttctgTCCCGTTCAGCTCAAATTGCAATA
GTTGTCCAAGTCCGACCTTTTATTTAAGGTTTTTACATCGTGGATGTAAT
ACAAATTTCTTTGCCAATTTCGTACAGCCGTGATCTCGAATTTTCCTTAC
AGACTTTGAAATGAAAGGCTTGACAGAAAATATGtatatttagatatttg
aatttAGAAAGCTTTGCCATGATCTTTTTCAACCTTTTGATGAAAATCAC
TATCTAATTTTTCTAGCAACTTTTCTCGCCCAAAGTTGCCTGACAT Run BLAST on NCBI transcript from alignment at sc0000533:25748..27745- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025389 ID=TCONS_00025389|Name=TCONS_00025389|organism=Clytia hemisphaerica|type=transcript|length=1998bp|location=Sequence derived from alignment at sc0000533:25748..27745- (Clytia hemisphaerica)
ACCCACCCCCAAGGGGAGAATCAAAAATGAGTCCCCTCCCTGTCGATTCT
TTGAAGCTTTATAAATGAATGGACATGACTTTTTGATGACTTGGTCCGTG
GGTCGTGGGTTTCGGCAGGGGGATTAAATAATTCTCCAATTTAGCTCTGC
AAATCCTTAACTGGAGGTTTTATAGCCCTGACATTATTTTAAAGCTGGTT
TATTCTGGAGATATCTTTCTGCAGGGAAACCATTAATTCAGTCCATCTTT
TAACTGTTTTTAACGCTGGGGAAACGAAAAGAACCCCAGGATAAATTCTT
TGTTTCTTATAAAAAATAAGCACAGGTGTCAGAAAAAAGGTTATTGTAGA
AAGGGCACTGTGGGTTAGCTTTGTTGTTCCCCCAGTTCAAAAGTCTTTTA
CGTCAAATTAATGTGAATGTTTTATTATGCTATTAGCAAAACAACAAAAG
ACCCATCGCTTCGAAATGTTTGATTCATTTTCAATAAACAATTTTTTCTC
AAGTTCTCCACCGTTGGTGCTATTTCTTTCTTTCCATGTTTGTTTTGATT
TCTCTTTGAATGTGAATCTCTGCGGTGGAGTTTTTCTTTTTGCAACATTC
TATTTCCACGCGGCGAGACTACAAACTTTCAACTCTCACACCATTCAGAA
AATGGAATGTGAGTGGAGTGTGGTGGTTTGTTTTTGGTGGGAAATTTGGT
TGTTGGAAAATTTTTGTTATATTTTTTTGATTCTGCCCTTTTTTCAAACG
CTTCCCTGTTTACTATTTTAGAATTTATGCTCCCCGGTTACATTAGACTA
GTAAACTAGTCGGTTATTACTTATAATAAAATTGTCAATCAAATAATGTA
AACACTAATTAAATATTCAGCGCGCGTGAGAGAAAAGGATAATAACCGAC
TAGAAGCTTCTTCCAACACCTTTTTTTCTTCACCTAAATTCGTAAGGAGA
GACATACAGATTTCTGTATGTCTGACCCGTGCGGGATTGCATTTATTTTT
CTTTCTGTTTATTGTATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAGTTGGATGGATTCTCAAAAACCTAAAAAAGGTTGTAAAATTAAAC
AACGTTTTTTGAGGGAAGTAGCTTCTAGTCGTTGAAATTCAGAAAAGACA
CGCAACCTCACTTCTTCGATTCTTTTTATTTGGAGCTTAAATTTGTTGTA
TATGGGTCTGTTTTCAACGACTAGTTTACTAGTCTACGGTTACATAAGTT
CGATAAATCGCGTAGAAAGTTTCAGCTTGAACAAAAGAGCTCTGGTCTTT
TTTTTTTTAATCTTTACCTTGTAGTTTTATATATACTATTTATTTTGTAA
AAGCTGGTAAGGTTGCAGGGGCTTGATTTTTATTGAATGAAATTCGGAAC
AATGGTCTGTGTCTACGATAGGCACAGTAAAGAGAGATTCTCCGCGTTTT
TTTCTTCCTCTGGTAAAACGTCTTTAAAACTGAAAACTTGAGCAAATCTT
TGTGAGATGGGGCTTTTCTGGTCTGCTTTTCTTATCTACTTTGCCATTTC
TTTGAAAATAATTTAAATTGATTTTCTGTCCCGTTCAGCTCAAATTGCAA
TAGTTGTCCAAGTCCGACCTTTTATTTAAGGTTTTTACATCGTGGATGTA
ATACAAATTTCTTTGCCAATTTCGTACAGCCGTGATCTCGAATTTTCCTT
ACAGACTTTGAAATGAAAGGCTTGACAGAAAATATGTATATTTAGATATT
TGAATTTAGAAAGCTTTGCCATGATCTTTTTCAACCTTTTGATGAAAATC
ACTATCTAATTTTTCTAGCAACTTTTCTCGCCCAAAGTTGCCTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025389-exon-sc0000533-1575043694:26955..27745 | TCONS_00025389-exon-sc0000533-1575043694:26955..27745 | Clytia hemisphaerica | exon |
| TCONS_00025389-exon-sc0000533-1575043694:25748..26352 | TCONS_00025389-exon-sc0000533-1575043694:25748..26352 | Clytia hemisphaerica | exon |
| TCONS_00025389-exon-sc0000533-1510915933:26955..27745 | TCONS_00025389-exon-sc0000533-1510915933:26955..27745 | Clytia hemisphaerica | exon |
| TCONS_00025389-exon-sc0000533-1510915933:25748..26352 | TCONS_00025389-exon-sc0000533-1510915933:25748..26352 | Clytia hemisphaerica | exon |
| TCONS_00025389-exon-sc0000533-1491911889:26955..27745 | TCONS_00025389-exon-sc0000533-1491911889:26955..27745 | Clytia hemisphaerica | exon |
| TCONS_00025389-exon-sc0000533-1491911889:25748..26352 | TCONS_00025389-exon-sc0000533-1491911889:25748..26352 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000533 | supercontig | sc0000533:25748..27745 - |
Blast
The following BLAST results are available for this feature:
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