TCONS_00025382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025382
Unique NameTCONS_00025382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025382 ID=TCONS_00025382|Name=TCONS_00025382|organism=Clytia hemisphaerica|type=transcript|length=668bp
TAGAACTCTCACATATTAGCCAAGCTAGGATCTTATTTTTTACTAGAATC
CCAACCCTAGAGGAATTCAAGAAATCTTTGGTCACCATACTTAattaaat
ttcaatattttttttccattccaTTGCTATTATATATTCTTGTAACATTC
TATATTACTATAAATCACCTACTCCTATAGCACGCACCATATACAGTTTA
ACATATGTTTATTTACACGCAGTGTAATTCAAAGATTGGATAGGTGTATG
TAATGCAATTGTTTTCTATAACACATAACGTGCCCTGCTCATCATGTGCC
AAAAGATAACAATCATCTATCTTTCGTTGTTGCTTGTCTCCAGTCATTGC
TTGATCGATTGCTTTTGCTCTTGATGGGGGTAATGTTGCCATGGACACTT
CGATTGGACGATTAGACTCGGACGTTACAATGGCGATTATTAAgattaaa
aaagtaaatttccaATAGAACTGCATTTTTGAGATCAACCTTTCAGTTCG
GCTCCTCGTAGTATGTCCTTTGACTGATTAAAACTAAGAAAGTTCTGATT
TTCACTTTAATTTATCTATTAAGAAGAGCAATATTCAATGTGAAAAGTAT
GACCTCAACTAAAATTTTCTCACGTGAAATATTCCCCTTTTCacacaata
aaaaatcaataaattgtG
Run BLAST on NCBI

transcript from alignment at sc0000533:98499..99166+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025382 ID=TCONS_00025382|Name=TCONS_00025382|organism=Clytia hemisphaerica|type=transcript|length=668bp|location=Sequence derived from alignment at sc0000533:98499..99166+ (Clytia hemisphaerica)
TAGAACTCTCACATATTAGCCAAGCTAGGATCTTATTTTTTACTAGAATC
CCAACCCTAGAGGAATTCAAGAAATCTTTGGTCACCATACTTAattaaat
ttcaatattttttttccattccaTTGCTATTATATATTCTTGTAACATTC
TATATTACTATAAATCACCTACTCCTATAGCACGCACCATATACAGTTTA
ACATATGTTTATTTACACGCAGTGTAATTCAAAGATTGGATAGGTGTATG
TAATGCAATTGTTTTCTATAACACATAACGTGCCCTGCTCATCATGTGCC
AAAAGATAACAATCATCTATCTTTCGTTGTTGCTTGTCTCCAGTCATTGC
TTGATCGATTGCTTTTGCTCTTGATGGGGGTAATGTTGCCATGGACACTT
CGATTGGACGATTAGACTCGGACGTTACAATGGCGATTATTAAgattaaa
aaagtaaatttccaATAGAACTGCATTTTTGAGATCAACCTTTCAGTTCG
GCTCCTCGTAGTATGTCCTTTGACTGATTAAAACTAAGAAAGTTCTGATT
TTCACTTTAATTTATCTATTAAGAAGAGCAATATTCAATGTGAAAAGTAT
GACCTCAACTAAAATTTTCTCACGTGAAATATTCCCCTTTTCacacaata
aaaaatcaataaattgtG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014253XLOC_014253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025382-exon-sc0000533-1491911889:98499..99166TCONS_00025382-exon-sc0000533-1491911889:98499..99166Clytia hemisphaericaexon
TCONS_00025382-exon-sc0000533-1510915933:98499..99166TCONS_00025382-exon-sc0000533-1510915933:98499..99166Clytia hemisphaericaexon
TCONS_00025382-exon-sc0000533-1575043694:98499..99166TCONS_00025382-exon-sc0000533-1575043694:98499..99166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:98499..99166 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.256861	0.312704	0	3.55729	4.18098	4.43106	2.7339	2.25097	3.83995	0	0	0	0	0	0	0	0.0859795	0.224195	0.218709	0	0	0	0.148127	0.150419	0	0.140353	0.0874063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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