|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025381 ID=TCONS_00025381|Name=TCONS_00025381|organism=Clytia hemisphaerica|type=transcript|length=1045bp
CTGTTGCTTCTTTTAAAGTTTTGGTCAAAAGTTGATTCTATTAATTTGTc
tactttttaataatttttctacTACTATAATTTACTTGACAATTCTTTTA
CAAATTTCAATTCATTGTATATAAGcgtgcatttttttataaataacaaG
TGTGGATTTAGATAGTGTTTTTAAAttacaaatcttttttgaaattataa
tttttcgaaaattctaaatatcgAAACTGTTTACCAAAGAAACAATTCAG
TTTGAAAACTCATCAAATAACATTCAATTTAGAATTGATGGCGGTTGCCA
TGGACTCTCAAGGGTGGTAATTGACCCCAGCCCTTTTCTAAAAACAGTTA
TTGATAAAGTTAAATGCTGAATTactttccaaaataaaattgttattgAA
GTATCTAAATTTGAGTTTGACATTCAAATTTCAGGAAATgtcgaaacttt
tttataaatctCCCATCTTGGCAATCTATGATTTCGCTCCAGTGAAATAT
ACTCCTGGTAACAATCTTTATTATTATACAATCGTTCGCATTATATATTT
TACCCCTCGCCGTAAACAGTTTAACATACATATGTTTATTTACACGCAGT
GTAATTCAAAGATTGGATAGGTGTATGTAATGCAATTGTTTTCTATAACA
CATAACGTGCCCTGCTCATCATGTGCCAAAAGATAACAATCATCTATCTT
TCGTTGTTGCTTGTCTCCAGTCATTGCTTGATCGATTGCTTTTGCTCTTG
ATGGGGGTAATGTTGCCATGGACACTTCGATTGGACGATTAGACTCGGAC
GTTACAATGGCGATTATTAAgattaaaaaagtaaatttccaATAGAACTG
CATTTTTGAGATCAACCTTTCAGTTCGGCTCCTCGTAGTATGTCCTTTGA
CTGATTAAAACTAAGAAAGTTCTGATTTTCACTTTAATTTATCTATTAAG
AAGAGCAATATTCAATGTGAAAAGTATGACCTCAACTAAAATTTTCTCAC
GTGAAATATTCCCCTTTTCacacaataaaaaatcaataaattgtG Run BLAST on NCBI transcript from alignment at sc0000533:96895..99166+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025381 ID=TCONS_00025381|Name=TCONS_00025381|organism=Clytia hemisphaerica|type=transcript|length=2272bp|location=Sequence derived from alignment at sc0000533:96895..99166+ (Clytia hemisphaerica)
CTGTTGCTTCTTTTAAAGTTTTGGTCAAAAGTTGATTCTATTAATTTGTc
tactttttaataatttttctacTACTATAATTTACTTGACAATTCTTTTA
CAAATTTCAATTCATTGTATATAAGcgtgcatttttttataaataacaaG
TGTGGATTTAGATAGTGTTTTTAAAttacaaatcttttttgaaattataa
tttttcgaaaattctaaatatcgAAACTGTTTACCAAAGAAACAATTCAG
TTTGAAAACTCATCAAATAACATTCAATTTAGAATTGATGGCGGTTGCCA
TGGACTCTCAAGGGTGGTAATTGACCCCAGCCCTTTTCTAAAAACAGTTA
TTGATAAAGTTAAATGCTGAATTactttccaaaataaaattgttattgAA
GTATCTAAATTTGAGTTTGACATTCAAATTTCAGGAAATgtcgaaacttt
tttataaatctCCCATCTTGGCAATCTATGATTTCGCTCCAGTGAAATAT
ACTCCTGGTAACAATCTTTATTATTATACAATCGTTCGCATTATATATTT
TACCCCTCGCCGTAAACAGTTTAACATACATGTGTTTATTTACACGCAGT
GTAATTCAAAGATTGGATAGGTGTATGTAATACAATTGTTTTCTGTAACA
CATAACGTGCCCTGCTCATCATGTTCCAAAAGATAACAATCATCTATCTT
TCGTTGTTGCGTTTTACCAGTCATTGCTTGATCGATTGCTTTTACTCTTG
ATAGGGGTAATGTTGCCATGGACACTTCGATTGGACGATTAGACTCGGAC
GTTACAATGGCGATTATTAAgattaaaaaagtaaatttccaATAGAACTG
CATTTTTGAGATCAACCTTTCAGTTCGGCTTCTCGTAGTATGTCCTTTGA
CTGATTAAAACTAAGAAAGTTctgattttcattttaatttatcTATTAAG
AAGAGCAATATTCAATGTGAAAAGTATGACCTCAACTAAAATTTTCTCAC
GTGAAATATTCCCCTTTTCacacaataaaaaatcaataaattgtGGAGca
atatacaccttttcgaccgtagtcgcgcgggcattttttgtccgctttat
cccactaaaaccgtcccagtccttttttgacgcatttttctattgtatat
aggtgcgaaaaaaggactgggacggttctagtgggataaagcggacaaaa
aaatgcccgcgcgactacggtcgaaaaggtgtatttaatACTTAATAATT
GAGAGAATATAATTGTCTCAATTTTCTATTTAAATTGCGAATCATTTTAA
AgattataattttttgagagaCCGCATTCTTGAATCGACAACTTGACGGT
CAATCAATGCCTAATTTACACCGATTATTTCCAATATTTCGaattttaaa
ttcaagaaaacTAATTTTTCCCAGGACTGAACATGTCGGAGCagtaatga
taaaaaaatacagATTTGAGAGATTTCATATTTCGGAGAGAATTATTTTT
AGCAAATGACCGGTGGGCTACATCGGAACATATGCCTTATACCGGGATTT
CGAATTTTAACTTTATGCATGTCCTAGAAATTATCTGATTTTGACGTACA
ACAATAGAACTCTCACATATTAGCCAAGCTAGGATCTTATTTTTTACTAG
AATCCCAACCCTAGAGGAATTCAAGAAATCTTTGGTCACCATACTTAatt
aaatttcaatattttttttccattccaTTGCTATTATATATTCTTGTAAC
ATTCTATATTACTATAAATCACCTACTCCTATAGCACGCACCATATACAG
TTTAACATATGTTTATTTACACGCAGTGTAATTCAAAGATTGGATAGGTG
TATGTAATGCAATTGTTTTCTATAACACATAACGTGCCCTGCTCATCATG
TGCCAAAAGATAACAATCATCTATCTTTCGTTGTTGCTTGTCTCCAGTCA
TTGCTTGATCGATTGCTTTTGCTCTTGATGGGGGTAATGTTGCCATGGAC
ACTTCGATTGGACGATTAGACTCGGACGTTACAATGGCGATTATTAAgat
taaaaaagtaaatttccaATAGAACTGCATTTTTGAGATCAACCTTTCAG
TTCGGCTCCTCGTAGTATGTCCTTTGACTGATTAAAACTAAGAAAGTTCT
GATTTTCACTTTAATTTATCTATTAAGAAGAGCAATATTCAATGTGAAAA
GTATGACCTCAACTAAAATTTTCTCACGTGAAATATTCCCCTTTTCacac
aataaaaaatcaataaattgtG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025381-exon-sc0000533-1491911889:96895..97473 | TCONS_00025381-exon-sc0000533-1491911889:96895..97473 | Clytia hemisphaerica | exon |
| TCONS_00025381-exon-sc0000533-1510915933:96895..97473 | TCONS_00025381-exon-sc0000533-1510915933:96895..97473 | Clytia hemisphaerica | exon |
| TCONS_00025381-exon-sc0000533-1575043694:96895..97473 | TCONS_00025381-exon-sc0000533-1575043694:96895..97473 | Clytia hemisphaerica | exon |
| TCONS_00025381-exon-sc0000533-1491911889:98701..99166 | TCONS_00025381-exon-sc0000533-1491911889:98701..99166 | Clytia hemisphaerica | exon |
| TCONS_00025381-exon-sc0000533-1510915933:98701..99166 | TCONS_00025381-exon-sc0000533-1510915933:98701..99166 | Clytia hemisphaerica | exon |
| TCONS_00025381-exon-sc0000533-1575043694:98701..99166 | TCONS_00025381-exon-sc0000533-1575043694:98701..99166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000533 | supercontig | sc0000533:96895..99166 + |
Blast
The following BLAST results are available for this feature:
|
