TCONS_00025376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025376
Unique NameTCONS_00025376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025376 ID=TCONS_00025376|Name=TCONS_00025376|organism=Clytia hemisphaerica|type=transcript|length=1312bp
GGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAGTTACAC
AGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTTTATTGG
ACATCGTTCTTTGTGCTTCATCGAAAAATTCTGCATCAGCTGATGAACAC
TTCTTTACCTACCATCTTTTGCATCATCGTTGTTTTGTTGTCCGTTGCCA
TGGGGATATTCCATATTTATGCCATCGCAAGCCATAATGACAGAGCTGGA
GCAGGCCATACTCACTAGAGTAAACCGCAAAATGATGTATGATAGTTTTG
TGGGGAACTTGTGGAATTGTAGAATGGAACAAGATCGAGACAAAACTGAA
GAACTAATACTTAAAGGAAACATGATAAACAAGAGATAAGGCTAGAAAAA
NACAAGATCGAGACAAAACTGAAGAACTAATACTTAAAGGAAACATGATA
AACAAGAGATAAGGctagaaaaaatgatttttttgttttaatggtTTACT
GTTTTCctttttcatatcaggacagtgtctgcctattgttatattatgct
gatataagcaaaaaaaggtttttcttttcctctttctgaccaatcttgct
ccacatccgtgtcaatccaaaaaaTTATGTATTAATGTGTCACTGTTTTA
ATGATGAAGCTATTAATTACTTTAATGGGGTAAGCTTTCACTGGggttaa
atttcgcgaatgggCCTGTctgcaaaattatttttatatggTAGTGtgcg
aaaattcgaaaaataacGAATAGAGATATTCTTCAATCAAAGCGGGGTTT
GAgtagtctgattcgcagaccttTAGTGGCTAAATATAAGATTACTTTTT
TTGTTAGAGTATGAGAAGATCCCTAGCGAAAAGGGCAAATCAAAACTCAT
AATAGTATAATAGTATAatagtattttaaaattttcgcgaatcgaagAGA
GATTTTTCgtgggtacttaatttcgcagatgaggcccttccaaatttcca
ttgggacttaatttcgcgatccgcgatcccattaaagtattcaacatgac
atcttATTTTATCCTAGTCTATTTTACTCTAATTTTAAACcgtgtaatat
tttttgtgtaaaaacgttaattttttattgactttatTTTACCCAACATA
CACTGTAAGCGCATATTTTATTTACCATGATTAATACCATTCAATTATCA
ATAGAAAATATAATTCATGATATCCTGTCTCTGTGCCAAATTCACAAACC
AATTCATTTGGTTGCAAAGAAAATATGGAGTGAGGCGAAAAAAGTCCCTT
CGTGCTTAGTGC
Run BLAST on NCBI

transcript from alignment at sc0000533:1311..4648+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025376 ID=TCONS_00025376|Name=TCONS_00025376|organism=Clytia hemisphaerica|type=transcript|length=3338bp|location=Sequence derived from alignment at sc0000533:1311..4648+ (Clytia hemisphaerica)
GGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAGTTACAC
AGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTTTATTGG
ACATCGTTCTTTGTGCTTCATCGAAAAATTCTGCATCAGCTGATGGTAAG
ATTTCcctcttttctttttcgtttatTTGTTTTCTCTGGTTTCCATCAAA
AGCTAACTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGTGATGGAGAacattcttatattttagcgataacacacaca
aacttttctactcaatcgcatgttcaaactcgatactttaattagggaca
ccctgtagatgTGTTTGTAcaagttccaatcccatcaatcCCAtctctct
tttgcacgttaattgcatcgtttgacaaaagatatataacagcttgcacg
tatctttaattgagccgcattgaattgtgggattgcaactcgtacaaatg
tcaaaaaaagtgaaaagtaataattatgacgtatgtgttgcggagcgcta
ttggtctgaatcacagacctctacaaaaccgcagatAGCATGCAATACGG
AACACGAATACGTTGGCGTGTATGCAAACAATCTTTATTTCAGTCTGATC
TTTTGCCAGAGTCCATGTCGTGACAAGGGAAGAATTATTCTATCAAACGT
TTCATAAATGTTTCTTTATAGAACACTTCTTTACCTACCATCTTTTGCAT
CATCGTTGTTTTGTTGTCCGTTGCCATGGGGATATTCCATATTTATGCCA
TCGCAAGCCATAATGACAGAGCTGGAGCAGGCCATACTCACTAGAGTAAA
CCGCAAAATGATGTATGATAGTTTTGTGGGGAACTTGTGGAATTGTAGAA
TGGAACAAGATCGAGACAAAACTGAAGAACTAATACTTAAAGGAAACATG
ATAAACAAGAGATAAGGCTAGAAAAANACAAGATCGAGACAAAACTGAAG
AACTAATACTTAAAGGAAACATGATAAACAAGAGATAAGGctagaaaaaa
tgatttttttgttttaatggtTTACTGTTTTCctttttcatatcaggaca
gtgtctgcctattgttatattatgctgatataagcaaaaaaaggtttttc
ttttcctctttctgaccaatcttgctccacatccgtgtcaatccaaaaaa
TTATGTATTAATGTGTCACTGTTTTAATGATGAAGCTATTAATTACTTTA
ATGGGGTAAGCTTTCACTGGggttaaatttcgcgaatgggCCTGTctgca
aaattatttttatatggTAGTGtgcgaaaattcgaaaaataacGAATAGA
GATATTCTTCAATCAAAGCGGGGTTTGAgtagtctgattcgcagaccttT
AGTGGCTAAATATAAGATTACTTTTTTTGTTAGAGTATGAGAAGATCCCT
AGCGAAAAGGGCAAATCAAAACTCATAATAGTATAATAGTATAatagtat
tttaaaattttcgcgaatcgaagAGAGATTTTTCgtgggtacttaatttc
gcagatgaggcccttccaaatttccattgggacttaatttcgcgatccgc
gatcccattaaagtattcaacatgacatcttATTTTATCCTAGTCTATTT
TACTCTAATTTTAAACcgtgtaatattttttgtgtaaaaacgttaatttt
ttattgactttatTTTACCCAACATACACTGTAAGCGCATATTTTATTTA
CCATGATTAATACCATTCAATTATCAATAGAAAATATAATTCATGATATC
CTGTCTCTGTGCCAAATTCACAAACCAATTCATTTGGTTGCAAAGAAAAT
ATGGAGTGAGGCGAAAAAAGTCCCTTCGTGCTTAGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014249XLOC_014249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025376-exon-sc0000533-1491911889:1311..1455TCONS_00025376-exon-sc0000533-1491911889:1311..1455Clytia hemisphaericaexon
TCONS_00025376-exon-sc0000533-1510915933:1311..1455TCONS_00025376-exon-sc0000533-1510915933:1311..1455Clytia hemisphaericaexon
TCONS_00025376-exon-sc0000533-1575043694:1311..1455TCONS_00025376-exon-sc0000533-1575043694:1311..1455Clytia hemisphaericaexon
TCONS_00025376-exon-sc0000533-1491911889:3482..4648TCONS_00025376-exon-sc0000533-1491911889:3482..4648Clytia hemisphaericaexon
TCONS_00025376-exon-sc0000533-1510915933:3482..4648TCONS_00025376-exon-sc0000533-1510915933:3482..4648Clytia hemisphaericaexon
TCONS_00025376-exon-sc0000533-1575043694:3482..4648TCONS_00025376-exon-sc0000533-1575043694:3482..4648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:1311..4648 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135677	0.298159	0	0.336444	7.31874	7.69385	4.21789	5.59575	5.06758	5.23143	4.86307	3.54497	4.34446	3.57223	2.01958	2.03579	4.38851	3.8572	2.81332	3.81367	1.4616	1.63996	1.19423	1.29668	5.19997	6.92911	1.74709	1.46373	1.14523	1.77019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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