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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025357 ID=TCONS_00025357|Name=TCONS_00025357|organism=Clytia hemisphaerica|type=transcript|length=772bp
ACCTGGCTGTATTTCTAGAAACAAACCTACTTTTTTGGAACTGagctatt
ttctatttttgttctgaaaatttcaggtgGAGATACTACAAATCAAAAGT
CCAGAGGTGCTTTAAATCAAAAGAACAAAATGAAGAGAAAGAAAACAACT
GTATTATCCATATCAAACATGAAACAACCGGAATCCAAGACGGCAAACTA
TATGGAGGAGATGCTTGGTAATCACAATATAATTGGACAATACAAGGAAT
TAAAAGAGAAAGTGAAGAAGAATAAAAGCCTCTACAAAGATTCATTTCTT
GACATCTGTGCCAAAATAGAGGTCATGTTAAATTCTAAACGAGACACAGT
TGCCAAGGAGATAAATGCGGTTGAGGTTGATGCGCTTAAAGAAAACATGA
CATTATCAGTAACACCAAAAGACGAAACAAAAAAGCAGCAATATACATCA
TTACTGAACAAGCTCAAGATTTTGAAGGCTTTAAAGAATTCAATTACAAG
TGATATTGCAACTTTTAAACAATAACTTCTCATTTTTATAATTATATACT
TATGATATCGCACGATGAGTAATTATTTCTTATGCGGTGCACCTTCAAGG
atagcaattaatcgttaatcacattCTCGAAAAGGGTTCCAATTTCTTCA
AATTACTTTGTGTCAcctgaccctagattttggaggtgggtcggtcggtc
ggaattttttttattttggcgatttttgaaattttcgtccatggaagggt
taacagtttgtttacatttagg Run BLAST on NCBI protein sequence of TCONS_00025357-protein >TCONS_00025357-protein ID=TCONS_00025357-protein|Name=TCONS_00025357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MKRKKTTVLSISNMKQPESKTANYMEEMLGNHNIIGQYKELKEKVKKNKS
LYKDSFLDICAKIEVMLNSKRDTVAKEINAVEVDALKENMTLSVTPKDET
KKQQYTSLLNKLKILKALKNSITSDIATFKQ Run BLAST on NCBI transcript from alignment at sc0000532:204534..205450- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025357 ID=TCONS_00025357|Name=TCONS_00025357|organism=Clytia hemisphaerica|type=transcript|length=917bp|location=Sequence derived from alignment at sc0000532:204534..205450- (Clytia hemisphaerica)
ACCTGGCTGTATTTCTAGAAACAAACCTACTTTTTTGGAACTGAGCTATT
TTCTATTTTTGTTCTGAAAATTTCAGGTGGAGATACTACAAATCAAAAGT
CCAGAGGTGCTTTAAATCAAAAGAACAAAATGAAGAGAAAGAAAACAAGT
AGGACGACAATTTCTACAAAAAATACCAATAAAAAAGTGACATTTTAAAT
TTCTCCCTTGTACGTATGGTTAAAGAATCTTTAACCATATTTTCTTAGAG
GGCTATTTTAATAATTTGCAATTTATTCTTACTTCACTCATAGCTGTATT
ATCCATATCAAACATGAAACAACCGGAATCCAAGACGGCAAACTATATGG
AGGAGATGCTTGGTAATCACAATATAATTGGACAATACAAGGAATTAAAA
GAGAAAGTGAAGAAGAATAAAAGCCTCTACAAAGATTCATTTCTTGACAT
CTGTGCCAAAATAGAGGTCATGTTAAATTCTAAACGAGACACAGTTGCCA
AGGAGATAAATGCGGTTGAGGTTGATGCGCTTAAAGAAAACATGACATTA
TCAGTAACACCAAAAGACGAAACAAAAAAGCAGCAATATACATCATTACT
GAACAAGCTCAAGATTTTGAAGGCTTTAAAGAATTCAATTACAAGTGATA
TTGCAACTTTTAAACAATAACTTCTCATTTTTATAATTATATACTTATGA
TATCGCACGATGAGTAATTATTTCTTATGCGGTGCACCTTCAAGGATAGC
AATTAATCGTTAATCACATTCTCGAAAAGGGTTCCAATTTCTTCAAATTA
CTTTGTGTCACCTGACCCTAGATTTTGGAGGTGGGTCGGTCGGTCGGAAT
TTTTTTTATTTTGGCGATTTTTGAAATTTTCGTCCATGGAAGGGTTAACA
GTTTGTTTACATTTAGG Coding sequence (CDS) from alignment at sc0000532:204534..205450- >TCONS_00025357 ID=TCONS_00025357|Name=TCONS_00025357|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000532:204534..205450- (Clytia hemisphaerica)
CTGTATTATCCATATCAAACATGAAACAACCGGAATCCAAGACGGCAAAC
TATATGGAGGAGATGCTTGGTAATCACAATATAATTGGACAATACAAGGA
ATTAAAAGAGAAAGTGAAGAAGAATAAAAGCCTCTACAAAGATTCATTTC
TTGACATCTGTGCCAAAATAGAGGTCATGTTAAATTCTAAACGAGACACA
GTTGCCAAGGAGATAAATGCGGTTGAGGTTGATGCGCTTAAAGAAAACAT
GACATTATCAGTAACACCAAAAGACGAAACAAAAAAGCAGCAATATACAT
CATTACTGAACAAGCTCAAGATTTTGAAGGCTTTAAAGAATTCAATTACA
AGTGATATTGCAACTTTTAAACAATAAATGAAGAGAAAGAAAACAACTGT
ATTATCCATATCAAACATGAAACAACCGGAATCCAAGACGGCAAACTATA
TGGAGGAGATGCTTGGTAATCACAATATAATTGGACAATACAAGGAATTA
AAAGAGAAAGTGAAGAAGAATAAAAGCCTCTACAAAGATTCATTTCTTGA
CATCTGTGCCAAAATAGAGGTCATGTTAAATTCTAAACGAGACACAGTTG
CCAAGGAGATAAATGCGGTTGAGGTTGATGCGCTTAAAGAAAACATGACA
TTATCAGTAACACCAAAAGACGAAACAAAAAAGCAGCAATATACATCATT
ACTGAACAAGCTCAAGATTTTGAAGGCTTTAAAGAATTCAATTACAAGTG
ATATTGCAACTTTTAAACAATAAATGAAGAGAAAGAAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025357-exon-sc0000532-1575043694:205303..205450 | TCONS_00025357-exon-sc0000532-1575043694:205303..205450 | Clytia hemisphaerica | exon |
| TCONS_00025357-exon-sc0000532-1575043694:204534..205157 | TCONS_00025357-exon-sc0000532-1575043694:204534..205157 | Clytia hemisphaerica | exon |
| TCONS_00025357-exon-sc0000532-1510915933:205303..205450 | TCONS_00025357-exon-sc0000532-1510915933:205303..205450 | Clytia hemisphaerica | exon |
| TCONS_00025357-exon-sc0000532-1510915933:204534..205157 | TCONS_00025357-exon-sc0000532-1510915933:204534..205157 | Clytia hemisphaerica | exon |
| TCONS_00025357-exon-sc0000532-1491911889:205303..205450 | TCONS_00025357-exon-sc0000532-1491911889:205303..205450 | Clytia hemisphaerica | exon |
| TCONS_00025357-exon-sc0000532-1491911889:204534..205157 | TCONS_00025357-exon-sc0000532-1491911889:204534..205157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000532 | supercontig | sc0000532:204534..205450 - |
Blast
The following BLAST results are available for this feature:
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