TCONS_00025354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025354
Unique NameTCONS_00025354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025354 ID=TCONS_00025354|Name=TCONS_00025354|organism=Clytia hemisphaerica|type=transcript|length=334bp
GTACACTGGAAGGGAAAAGTGCTGGAACTTAACCTCAAAAGCTGAAACAA
TCAAGAAAATGTGCATTTTTTGGAGAATTCTTCAGATACTACGCGATCTT
GATCATCTTTTATCGCCTTAAATGGTTTCACAAGCTGGTTCATTGTGTCA
TGGAGACATTCCATACCTTGTTCCCCATACAGTCCAAAGGCAAAGCCCCA
TTCTCGCAGAAACGGACAAACATGCTCTTCAAGCAGATGCAACTTTGGCG
TGATTGACTCGCCCTTGAACATCTCGTCAGTTCGAAAGTGCAAGAGACAA
TCGTTGATAGCAAACTCTGAAATCAAGGAGATGA
Run BLAST on NCBI

transcript from alignment at sc0000532:182699..183679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025354 ID=TCONS_00025354|Name=TCONS_00025354|organism=Clytia hemisphaerica|type=transcript|length=981bp|location=Sequence derived from alignment at sc0000532:182699..183679+ (Clytia hemisphaerica)
GTACACTGGAAGGGAAAAGTGCTGGAACTTAACCTCAAAAGCTGAAACAA
TCAAGAAAATGTGCATTTTTTGGAGAATTCTTCAGGTAAGCACAAAACAC
CCCCTCTATTTTTAGTCAGCAAATTTTTCTGTCAAAAAAAATAGCTGGTT
TGTGTTGGGTTAGGATGAAGCAAGTCAgagaaaaaagaattaacttgTTG
TAGGCTGGATTTCTTGTGAATTCATCTCTTAAAGTATTgcattattttcc
aaaaaagtggCTGCGGTTAGGTCTTTAAAACCTTGAGAAttctatcaaaa
ctttgaactTGTATAGTCTGTAACATTTATAACAATCAAAATATGTCATG
TCCTATTCCTAGGAAAGTCTAAAGTAAAAATTAGATAATATAATTAACTG
ACAAAGTGGAAATTTTACGCAAAGATTTGTTGAACATATAGTTTCGTTCG
CTGGATTTTGCGCTGATTTGACCTGCTTAACTCTAATTTTAAAATGTAGC
TAAATCGAATGAATGAAAAGATATCACATATATTCTGTATGAAGTAAATG
AAAAGGGAACAAAAGTTATGTAAAATTTGGGATTTAAGAAGGCATTAAAG
GTTTCATAACCATAAGCTAATTCATTTGAtcagattttctttttcgtcGT
AGATTTTGTTTGGTCGGTTCGAGTATTTCCATATTCTCCCTGTTTTTTGG
GTTCACTCTTGTATAATGTTCTCTCATTATAGATACTACGCGATCTTGAT
CATCTTTTATCGCCTTAAATGGTTTCACAAGCTGGTTCATTGTGTCATGG
AGACATTCCATACCTTGTTCCCCATACAGTCCAAAGGCAAAGCCCCATTC
TCGCAGAAACGGACAAACATGCTCTTCAAGCAGATGCAACTTTGGCGTGA
TTGACTCGCCCTTGAACATCTCGTCAGTTCGAAAGTGCAAGAGACAATCG
TTGATAGCAAACTCTGAAATCAAGGAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014227XLOC_014227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025354-exon-sc0000532-1491911889:182699..182783TCONS_00025354-exon-sc0000532-1491911889:182699..182783Clytia hemisphaericaexon
TCONS_00025354-exon-sc0000532-1510915933:182699..182783TCONS_00025354-exon-sc0000532-1510915933:182699..182783Clytia hemisphaericaexon
TCONS_00025354-exon-sc0000532-1575043694:182699..182783TCONS_00025354-exon-sc0000532-1575043694:182699..182783Clytia hemisphaericaexon
TCONS_00025354-exon-sc0000532-1491911889:183431..183679TCONS_00025354-exon-sc0000532-1491911889:183431..183679Clytia hemisphaericaexon
TCONS_00025354-exon-sc0000532-1510915933:183431..183679TCONS_00025354-exon-sc0000532-1510915933:183431..183679Clytia hemisphaericaexon
TCONS_00025354-exon-sc0000532-1575043694:183431..183679TCONS_00025354-exon-sc0000532-1575043694:183431..183679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000532supercontigsc0000532:182699..183679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.188758	0	0	0	0	0	0	0.315711	0	0	0	0	0	0.271957	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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