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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025353 ID=TCONS_00025353|Name=TCONS_00025353|organism=Clytia hemisphaerica|type=transcript|length=984bp
AGTTCCTTTAGACTAGGGGGTTGCTTTAGACTAGGGGGGACCCTCTTTCG
AACTATGTTATTCTATTCTATGGATTTTAATTACTCTAGGCGATTATTAA
ATCTttcttaaaattaattttcattaaCGTAGGCATTGCAACTTCTTTCT
GTACTGACGGTGTCAACCCTTTACGGTCAAACAACAGAAGTTACTCGATG
TGGCCTTTAATGGTGCAAATTCTGAACTGGCCACCAAAGTTTCGTAAATC
TTTTGCTGAAATCCAGTTACTGGGTATCGTTCCCGGCCATGGCACTGCTG
AACCAAAAAATCTAGAGCCATACCTCGAGGTCTTTGTTGACGAGATGAAG
GAGCTCTCAAATTGTTCCATGTACGTAAATGCCGAATGGAGAGAGGTTAA
AGTGAAGCTTTTGCAGTATGTATTCGACTTCCCAGCCATTGCTAAAGTAA
TGCATACTCAAGCACAAGGTGGTCTCAGTGCATGTCCGTGGTGTCAGAAC
AAAGGTAAACATTGCAAAACCTGCAGCAAGACACTGTATCTTGGATctcg
aaaatttttaaagacCGATTCACCATTACGAAAATCATCTCTTTTTCCTG
GAGACAAAGATGAAATGGCAGAACCTCCAAAAGCGTATACGAAAGAGAAG
CAACTTGAACTTCGACATCAGTACGAACAAAACAAGAACAAATCACAAAA
AGACAAGTTCACTAAAGAGAATAGAGTGAAAGGTGAATATGCCTTCATGA
AACTGCCATACCACGGTTTCACGGACGACTATCAGTCCGATGGTATGTAC
ACCGTAAAGTGTGTCGTATCCACGACGTTTGTATAACGCTGAACCACTCG
TAACGATCCGGAACGACCCGTAACGAACCGGATCGCCCTGGAACGACCCA
TAACGACCTGGAACGACCAATTACGTCATTCGCGGGCTTTGGAGGCTGGG
CACCATCGTTAACAGTCTTCTACCTACACAAAAT Run BLAST on NCBI protein sequence of TCONS_00025353-protein >TCONS_00025353-protein ID=TCONS_00025353-protein|Name=TCONS_00025353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MWPLMVQILNWPPKFRKSFAEIQLLGIVPGHGTAEPKNLEPYLEVFVDEM
KELSNCSMYVNAEWREVKVKLLQYVFDFPAIAKVMHTQAQGGLSACPWCQ
NKGKHCKTCSKTLYLGSRKFLKTDSPLRKSSLFPGDKDEMAEPPKAYTKE
KQLELRHQYEQNKNKSQKDKFTKENRVKGEYAFMKLPYHGFTDDYQSDGM
YTVKCVVSTTFV Run BLAST on NCBI transcript from alignment at sc0000532:179246..180761+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025353 ID=TCONS_00025353|Name=TCONS_00025353|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at sc0000532:179246..180761+ (Clytia hemisphaerica)
AGTTCCTTTAGACTAGGGGGTTGCTTTAGACTAGGGGGGACCCTCTTTCG
AACTATGTTATTCTATTCTATGGATTTTAATTACTCTAGGCGATTATTAA
ATCTttcttaaaattaattttcattaaCGTAGGCATTGCAACTTCTTTCT
GTACTGACGGTGTCAACCCTTTACGGTCAAACAACAGAAGTTACTCGATG
TGGCCTTTAATGGTGCAAATTCTGAACTGGCCACCAAAGTTTCGTAAATC
TTTTGCTGAAATCCAGTTACTGGGTATCGTTCCCGGCCATGGCACTGCTG
AACCAAAAAATCTAGAGCCATACCTCGAGGTCTTTGTTGACGAGATGAAG
GAGCTCTCAAATTGTTCCATGTACGTAAATGCCGAATGGAGAGAGGTTAA
AGTGAAGCTTTTGCAGTATGTATTCGACTTCCCAGCCATTGCTAAAGTAA
TGCATACTCAAGCACAAGGCAAGTATTTCCATTTGTGATACAAGTAAGAT
ATTAACGGTACTAATGAGCCTTTGGAACTTCGAAGGGTCAAATGCTCAAA
TGTTCTCTTTCTATTATGTCTGCTATACAAAACGGCTTGGCAATCGGACC
ATCAAACATTATTTCTACctacattttcttataaattctttcatgaaaat
gggaaaaaagatTTCCCCGTGAATAATTgatatcaattttcattttaata
ttATGTCGAAACTGTCTTTTTAGGTGGTCTCAGTGCATGTCCGTGGTGTC
AGAACAAAGGTAAACATTGCAAAACCTGCAGCAAGACACTGTATCTTGGA
TctcgaaaatttttaaagacCGATTCACCATTACGAAAATCATCTCTTTT
TCCTGGAGACAAAGATGAAATGGCAGAACCTCCAAAAGCGTATACGAAAG
AGAAGCAACTTGAACTTCGACATCAGTACGAACAAAACAAGAACAAATCA
CAAAAAGACAAGTTCACTAAAGAGAATAGAGTGAAAGGTATTAATAAAAA
GCAACCTTTTTAAGGGAACTATTTCTatgcgagaactaattttggcaaat
gtATCTAGTCTAAATTGGcgataaattcttttttctctaAATATTAGTCT
TTTCGATAAAAAATAGGTgttagaaaattattaaaatgctTAATATGTTG
GTGTGTTGACAATCATTTTATCTTGACACTCCATTGTGTATCACAGTTAA
AAAAAGCAGAAATACGTTTTAATATTTTGCTACAAAACATTTCCATATTC
ATTTTCACTTTTAGGTGAATATGCCTTCATGAAACTGCCATACCACGGTT
TCACGGACGACTATCAGTCCGATGGTATGTACACCGTAAAGTGTGTCGTA
TCCACGACGTTTGTATAACGCTGAACCACTCGTAACGATCCGGAACGACC
CGTAACGAACCGGATCGCCCTGGAACGACCCATAACGACCTGGAACGACC
AATTACGTCATTCGCGGGCTTTGGAGGCTGGGCACCATCGTTAACAGTCT
TCTACCTACACAAAAT Coding sequence (CDS) from alignment at sc0000532:179246..180761+ >TCONS_00025353 ID=TCONS_00025353|Name=TCONS_00025353|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at sc0000532:179246..180761+ (Clytia hemisphaerica)
ATGTGGCCTTTAATGGTGCAAATTCTGAACTGGCCACCAAAGTTTCGTAA
ATCTTTTGCTGAAATCCAGTTACTGGGTATCGTTCCCGGCCATGGCACTG
CTGAACCAAAAAATCTAGAGCCATACCTCGAGGTCTTTGTTGACGAGATG
AAGGAGCTCTCAAATTGTTCCATGTACGTAAATGCCGAATGGAGAGAGGT
TAAAGTGAAGCTTTTGCAGTATGTATTCGACTTCCCAGCCATTGCTAAAG
TAATGCATACTCAAGCACAAGGTGGTCTCAGTGCATGTCCGTGGTGTCAG
AACAAAGGTAAACATTGCAAAACCTGCAGCAAGACACTGTATCTTGGATc
tcgaaaatttttaaagacCGATTCACCATTACGAAAATCATCTCTTTTTC
CTGGAGACAAAGATGAAATGGCAGAACCTCCAAAAGCGTATACGAAAGAG
AAGCAACTTGAACTTCGACATCAGTACGAACAAAACAAGAACAAATCACA
AAAAGACAAGTTCACTAAAGAGAATAGAGTGAAAGGTGAATATGCCTTCA
TGAAACTGCCATACCACGGTTTCACGGACGACTATCAGTCCGATGGTATG
TACACCGTAAAGTGTGTCGTATCCACGACGTTTGTATAAATGTGGCCTTT
AATGGTGCAAATTCTGAACTGGCCACCAAAGTTTCGTAAATCTTTTGCTG
AAATCCAGTTACTGGGTATCGTTCCCGGCCATGGCACTGCTGAACCAAAA
AATCTAGAGCCATACCTCGAGGTCTTTGTTGACGAGATGAAGGAGCTCTC
AAATTGTTCCATGTACGTAAATGCCGAATGGAGAGAGGTTAAAGTGAAGC
TTTTGCAGTATGTATTCGACTTCCCAGCCATTGCTAAAGTAATGCATACT
CAAGCACAAGGTGGTCTCAGTGCATGTCCGTGGTGTCAGAACAAAGGTAA
ACATTGCAAAACCTGCAGCAAGACACTGTATCTTGGATctcgaaaatttt
taaagacCGATTCACCATTACGAAAATCATCTCTTTTTCCTGGAGACAAA
GATGAAATGGCAGAACCTCCAAAAGCGTATACGAAAGAGAAGCAACTTGA
ACTTCGACATCAGTACGAACAAAACAAGAACAAATCACAAAAAGACAAGT
TCACTAAAGAGAATAGAGTGAAAGGTGAATATGCCTTCATGAAACTGCCA
TACCACGGTTTCACGGACGACTATCAGTCCGATGGTATGTACACCGTAAA
GTGTGTCGTATCCACGACGTTTGTATAAATGTGGCCTTTAATGGTGCAAA
TTCTGAACTGGCCACCAAAGTTTCGTAAATCTTTTGCTGAAATCCAGTTA
CTGGGTATCGTTCCCGGCCATGGCACTGCTGAACCAAAAAATCTAGAGCC
ATACCTCGAGGTCTTTGTTGACGAGATGAAGGAGCTCTCAAATTGTTCCA
TGTACGTAAATGCCGAATGGAGAGAGGTTAAAGTGAAGCTTTTGCAGTAT
GTATTCGACTTCCCAGCCATTGCTAAAGTAATGCATACTCAAGCACAAGG
TGGTCTCAGTGCATGTCCGTGGTGTCAGAACAAAGGTAAACATTGCAAAA
CCTGCAGCAAGACACTGTATCTTGGATctcgaaaatttttaaagacCGAT
TCACCATTACGAAAATCATCTCTTTTTCCTGGAGACAAAGATGAAATGGC
AGAACCTCCAAAAGCGTATACGAAAGAGAAGCAACTTGAACTTCGACATC
AGTACGAACAAAACAAGAACAAATCACAAAAAGACAAGTTCACTAAAGAG
AATAGAGTGAAAGGTGAATATGCCTTCATGAAACTGCCATACCACGGTTT
CACGGACGACTATCAGTCCGATGGTATGTACACCGTAAAGTGTGTCGTAT
CCACGACGTTTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025353-exon-sc0000532-1491911889:179246..179713 | TCONS_00025353-exon-sc0000532-1491911889:179246..179713 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1510915933:179246..179713 | TCONS_00025353-exon-sc0000532-1510915933:179246..179713 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1575043694:179246..179713 | TCONS_00025353-exon-sc0000532-1575043694:179246..179713 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1491911889:179969..180232 | TCONS_00025353-exon-sc0000532-1491911889:179969..180232 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1510915933:179969..180232 | TCONS_00025353-exon-sc0000532-1510915933:179969..180232 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1575043694:179969..180232 | TCONS_00025353-exon-sc0000532-1575043694:179969..180232 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1491911889:180510..180761 | TCONS_00025353-exon-sc0000532-1491911889:180510..180761 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1510915933:180510..180761 | TCONS_00025353-exon-sc0000532-1510915933:180510..180761 | Clytia hemisphaerica | exon |
| TCONS_00025353-exon-sc0000532-1575043694:180510..180761 | TCONS_00025353-exon-sc0000532-1575043694:180510..180761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000532 | supercontig | sc0000532:179246..180761 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004242 | Transposase_21 |
Blast
The following BLAST results are available for this feature:
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