TCONS_00025324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025324
Unique NameTCONS_00025324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025324 ID=TCONS_00025324|Name=TCONS_00025324|organism=Clytia hemisphaerica|type=transcript|length=680bp
GTGTATTGTGATGGTTGGTCTACCGTATCCGAATAAAAACTCGCCAGAAT
TAATCGAAAAGATGGAATTCCTTAATAAAAACATCGGTccGAATGCGGGT
TCGGAACATTATGAAAACATTTGCATGAAGGCTGTCAATCAATCTATAGg
cCGTGCTATACGCCATAAGAACGATTATGCTTGTATACTAATGGTAGATC
AACGATACTCCAAAACATCCGTAAATAAGAAACTACCATCTTGGATTCGA
AAACAATTAGTTACGCATGATCGCTTTGGACCATGTCTTGGACAAATTAG
TAAGtttttcgcTGGGAAAAAGAAGTTGAAAAGTTGATGTGTTTTGGATA
TCGTCAAAGAGACGGTTTGAATGCAATGCCTTTTCATCATGGTCGTTTTC
TTTGACTAATGAcattcaatttctatttttaaacgTACACTGTAtgattt
gttttgttggttGTCTTGGTGATAAAAACCACGGGTTGATTCAAACGCAA
ACgaaattttttatgagattttttttctattctgtGTCCGTATCAAGAAC
TTTTGAAGTAATTCAAGAGAAAATGAATGATTATTTCATCACTGTTCATC
GATTTCAATTGAAGCAATGCAATTTTTCTACAAACCCAATCATAAATTTT
TTATCGTTTTTCGATTCAGTTCGTTTTCAT
Run BLAST on NCBI

transcript from alignment at sc0000531:145958..150252-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025324 ID=TCONS_00025324|Name=TCONS_00025324|organism=Clytia hemisphaerica|type=transcript|length=4295bp|location=Sequence derived from alignment at sc0000531:145958..150252- (Clytia hemisphaerica)
GTGTATTGTGATGGTTGGTCTACCGTATCCGAATAAAAACTCGCCAGAAT
TAATCGAAAAGATGGAATTCCTTAATAAAAACATCGGTGTAAGTTTTATA
TATTTCTGGCAAAATTTCTAAATGCGGGGCAAACTGAAGTCTTGCTTTCA
ACTACCTTGCTATTCTTTGAATTTAATAGATAGTATTATAAAATATTGTC
GGTAGTGCTTTTTGATTTTCCAAAGAGGGAAATTTGTCTTACAGTTATCC
ATCACTACGCTGGGGACTACAGTGTGTCCCAAAAAAAGGAACAAATCATA
ACTTATGCCATATTTTATGACTTATATGCTTATTTCAATCTCAAAAACCT
GTTCAATGATCTTGGAAATTAAATATCTATTGATTGAACAGAAACTTGAA
ATCTTATTTCATTTATTCTAAGCCTATTCTATTTTACTTTATATAAAAAT
TTGTCCGCTTTTTTGGGACACATTGTAGTGTGGAGCATGACTAGAAACTT
TTGGAACTTGTTGCTATTCGGGACGAAATTATTAGAATAAGGCTCTTAGA
CCTTAAAGTTAGAACTTAAAAAATAAGTAACGAAAGATTACAATTCAATA
TCGATGATTCAAAATTTGTTCAAAATCATTTTTGATCTATTCTGGGATAT
TTGTTTAATGCACTTCTTTATTCGCTGATGTCATATTTCGAATTTAAATG
AAATGTCAAAAATAGGAAGTGCTATATCCCCATCAGTCAATATTTATCTA
CCTTGAAATACGATTCCATAACATGAAGACAGATACCATAGTATGAATAC
ACAGACATTACACTGTGTAATTTGAATCATGAAAAGTTTAACCTTTGTCA
AGAAAACGTGACTGTAAGCCTGTATTATTCATCTATACGACTAGTTTGCT
TGCCCTTCATAATTGAAAACAATCCCTGTTTCATTGATTCGGTGTGTTTT
GCTAACGAGGATAAGAAAAATGTTTTCCACTTTTATAATTTGATCCCATG
AAGAATTTCAATTTAATATTTCCAAATTAATAGGTAAAAGGGGTCTCATT
TTAGTTTCTCAAAAGGGGACAATTTTTAGCCCTGTCAATGGGTAAGGGGT
TCAAGACATCCCCCTTCTCACAGACCTACTGGGACCCATTCCCACTGGAA
AAATTGGCCAAAATATCGTCCCCAGTGGGAAATTTTACTCTATTTTCTGT
CTCCGCTGAAAATAATCAGATAGATAAGCAAATCCTCACTGCAAAATATT
GTGCTATTTATTCCATCCCCTTTGAATTTTCTGACTCGAAAACAATGGAA
TTCAAATCCCCAGCCAAAAAAGAAACATAGGAATATCTATCCCTATTGAG
TTTTGTTCCGTTACTTTTACCCCCACTTGATAAAAAAATCCCACCGGGTC
TGTGAGAAGGGGGTGTCATAAGGGACCAAGCAGGTTAGTGACACCGTGTG
TGTTAACTACCGACAAGTAAATCTCACCAACATTTCTATTTTGGTTTCAA
ATGATTTGTTTGTAACATCTGTTTTGAGGGTCAATTTCTTTCAATTTTAA
TAAACGAATATATTTTTCCCTTTTTCAGCCGAATGCGGGTTCGGAACATT
ATGAAAACATTTGCATGAAGGCTGTCAATCAATCTATAGGTAAAAGCTGA
AAGTGGGAGGGTTGCTTTTCGTATTTGTATGTATCAAGTATATAACACTT
GACTCTGAAATGAACTTATGACGAAATTGGGTAGCATCTACGTACTTGGA
TACAAATTGGGTTCATTTTTGAAAAACAGTTTTCAAAGTTTACGATGAAA
GCTATTTAGATATTTACAGTATACCCATCCGATCCTTGAAACACTTCATT
TTAACTTGCCATATTCCCACTTCAATAGTCAAGTTTTGGTTTTTCAAGTA
CATAGGCGCCAATATGCTACTGCCTATTTGTTTATTTAGCTCATAACTTT
GTTATCAAAATAAAACATAACGCGAAGCCACTATCTTTCCTTCCTTTTCA
TTCCAAAGTAGTTTATATTTTGGCTTGTTTTTGTCCTCTCATTTGGCTTT
CAAGCTGACGTCAATTCAGTAAAGAGAGGCCCCTGTGAATAGAATGTTTT
GTGGTAGATAGTATTGACAATTTCGTCATACTCATATCCTTGTTTGAATT
TAATTTGTGTACTTGATATGTAAATCTGATTAAAGTGTTTGTCCATAACA
GTCGAATGTTTATTTTGTTATTTTGCAAGTTCCAAAACTCAATGACCCTT
TATTTGCAAGACATAACATGGTATTAGTGACAGTAATAAAATCTGGCCGG
GGGTATTATTAGTTTTGTCATTTGGTCTAATGTTCCCTTTATCAAACACC
CTTTGTCACTTAGTGGACAGGTATATTTTCTTCTCTGTCCTACCTGTAAA
TTTCATTTTATGTTACATTTAGTTCCTTACTTGAAAAATGTTATTTTTTT
TCATAGGCCGTGCTATACGCCATAAGAACGATTATGCTTGTATACTAATG
GTAGATCAACGATACTCCAAAACATCCGTAAATAAGAAACTACCATCTTG
GATTCGAAAACAATTAGTTACGCATGATCGCTTTGGACCATGTCTTGGAC
AAATTAGTAAGGTAAAAGCTCATACATTCCTCGAATTGGTGAAATTTTTT
GCCTACAATATCCCGAGATAAACACTACTGTTGACGTGGCTTCCTTAAAA
TGGTTTTCTTTCTCTATCCATATGTTTCTCCTGACTATCTTTTATCGACG
TGTATGGAATTTAGTGTCTACATACTATGGTTTGTAATAACAAGAATTGC
TTTTAATTAAAAGATGACCTAGTATACCACGTTTTTTGTCCTTTTAAGAA
TGAGAATACTTGCATGCTTAATTAATGGAGTGTTTCNGTAAAGAGAGGCC
CCTGTGAATAGAATGTTTTGTGGTAGATAGTATTGACAATTTCGTCATAC
TCATATCCTTGTTTGAATTTAATTTGTGTACTTGATATGTAAATCTGATT
AAAGTGTTTGTCCATAACAGTCGAATGTTTATTTTGTTATTTTGCAAGTT
CCAAAACTCAATGACCCTTTATTTGCAAGACATAACATGGTATTAGTGAC
AGTAATAAAATCTGGCCGGGGGTATTATTAGTTTTGTCATTTGGTCTAAT
GTTCCCTTTATCAAACACCCTTTGTCACTTAGTGGACAGGTATATTTTCT
TCTCTGTCCTACCTGTAAATTTCATTTTATGTTACATTTAGTTCCTTACT
TGAAAAATGTTATTTTTTTTCATAGGCCGTGCTATACGCCATAAGAACGA
TTATGCTTGTATACTAATGGTAGATCAACGATACTCCAAAACATCCGTAA
ATAAGAAACTACCATCTTGGATTCGAAAACAATTAGTTACGCATGATCGC
TTTGGACCATGTCTTGGACAAATTAGTAAGGTAAAAGCTCATACATTCCT
TGAATTGGTGAAATTTTTTGCCTACAATATGCCGAGATAAACACTACTGT
TGACGTGGCTTCCTTAAAATGGTTTCCTTTCTCTATCCATATGTCTCTCC
TGACTATCTTTTATCGACGTGTATGGAATTTAGTGTCTACCATACTACAG
TTTGTAATTACAAGAATTGCTTTTAATTAAAAGATGACCTAGTATACCAC
GTTTTTTGTCCTTTTAAGAATGAGAATACTTGCATGCTTAATTAATGGAG
TGTTTTATAATTAATCAATTATATTATCACCATGGAAACTTGTCAACCCC
TATTGGTTGCTTCCCTAATGCTTGACCTTGGTTCAATTTTTTTCAAAACA
TAAAACTCGAGAATATTATTTCATTAGACCAGCCTCGTTTTGAATTTTCT
CAATTTAAAATAGTTAGAAACTTCGCCTACAGTAATGTTTTGATGTTTTG
AATCAATTTTGTTTTTCAGTTTTTCGCTGGGAAAAAGAAGTTGAAAAGTT
GATGTGTTTTGGATATCGTCAAAGAGACGGTTTGAATGCAATGCCTTTTC
ATCATGGTCGTTTTCTTTGACTAATGACATTCAATTTCTATTTTTAAACG
TACACTGTATGATTTGTTTTGTTGGTTGTCTTGGTGATAAAAACCACGGG
TTGATTCAAACGCAAACGAAATTTTTTATGAGATTTTTTTTCTATTCTGT
GTCCGTATCAAGAACTTTTGAAGTAATTCAAGAGAAAATGAATGATTATT
TCATCACTGTTCATCGATTTCAATTGAAGCAATGCAATTTTTCTACAAAC
CCAATCATAAATTTTTTATCGTTTTTCGATTCAGTTCGTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014219XLOC_014219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025324-exon-sc0000531-1575043694:150165..150252TCONS_00025324-exon-sc0000531-1575043694:150165..150252Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1575043694:148614..148674TCONS_00025324-exon-sc0000531-1575043694:148614..148674Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1575043694:147642..147796TCONS_00025324-exon-sc0000531-1575043694:147642..147796Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1575043694:145958..146333TCONS_00025324-exon-sc0000531-1575043694:145958..146333Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1510915933:150165..150252TCONS_00025324-exon-sc0000531-1510915933:150165..150252Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1510915933:148614..148674TCONS_00025324-exon-sc0000531-1510915933:148614..148674Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1510915933:147642..147796TCONS_00025324-exon-sc0000531-1510915933:147642..147796Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1510915933:145958..146333TCONS_00025324-exon-sc0000531-1510915933:145958..146333Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1491911889:150165..150252TCONS_00025324-exon-sc0000531-1491911889:150165..150252Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1491911889:148614..148674TCONS_00025324-exon-sc0000531-1491911889:148614..148674Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1491911889:147642..147796TCONS_00025324-exon-sc0000531-1491911889:147642..147796Clytia hemisphaericaexon
TCONS_00025324-exon-sc0000531-1491911889:145958..146333TCONS_00025324-exon-sc0000531-1491911889:145958..146333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000531supercontigsc0000531:145958..150252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.86839	2.15418	0.547243	0.0586902	0	0	0	0.190484	0.24261	0.27021	1.0656	0	0.833341	0	0.988515	1.45915	0	0.354017	0.710046	1.04458	0.300387	0.387509	1.98725	0.948008	0	0	0.327023	0.536913	1.30393	0.2652
Blast
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BLAST of TCONS_00025324 vs. Swiss-Prot (Human)
Match: D11L8 (Putative ATP-dependent RNA helicase DDX11-like protein 8 OS=Homo sapiens GN=DDX11L8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.813e-29
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 2 
Query:    2 CIVMVGLPYPNKNSPELIEKMEFLNKNIGPNA------GSEHYENICMKAVNQSIGRAIRHKNDYACILMVDQRYSKTSVNKKLPSWIRKQLVTHDRFGPCLGQISKF 307
            C+VMVG+P+PN  S EL EKM +L++ + P A      G    EN+CMKAVNQSIGRAIRH+ D+A I+++DQRY++  V  KLP+WIR  +     FGP +  + KF
Sbjct:  793 CVVMVGMPFPNIRSAELQEKMAYLDQTL-PRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPVLAKLPAWIRASVEVKATFGPAIAAVQKF 899
The following BLAST results are available for this feature:
BLAST of TCONS_00025324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
D11L86.813e-2950.00Putative ATP-dependent RNA helicase DDX11-like pro... [more]
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