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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025318 ID=TCONS_00025318|Name=TCONS_00025318|organism=Clytia hemisphaerica|type=transcript|length=3889bpRun BLAST on NCBI transcript from alignment at sc0000531:131834..144781- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025318 ID=TCONS_00025318|Name=TCONS_00025318|organism=Clytia hemisphaerica|type=transcript|length=12948bp|location=Sequence derived from alignment at sc0000531:131834..144781- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025318 vs. Swiss-Prot (Human)
Match: PKD2 (Polycystin-2 OS=Homo sapiens GN=PKD2 PE=1 SV=3) HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0 Identity = 360/720 (50.00%), Postives = 506/720 (70.28%), Query Frame = 2
Query: 551 TSLSXEFQVKTTLRELIIYVAFIVILCILTFGMTHSTMYYFTKVMKDLFIEEP-------EFESMTTMKHFWDFADDGLMNGLYWEEYYNGKPITNNDEKGYIYFENKLLGRPRLRQVRVRNDSCTVPDDFKKEIKECYAPYSESVEDKRAFRVMNGSAWEYSTEDELNGRGFRGRVTTYGGGGFTKLLAGEKAPSKDIIAELKANLWLDRGTRAVFIDFTVYNANINLFCIVTLLLEYPATGGCIPYYKFRTLKLLRYVTPMDQFVFACECIFVLFLLYYAIEEVIEIHKHKLEYFKDFWNIVDILVVLMGIVCVAFNVYRTMEVGNLLQDLLDHQDKYANFDTLGYWQETFNDFIAVAVFVAWIKVFKYISFNKTMTQLQSTLARCAKDIAGFAVMFFIIFLAYAQWGYLIFGTQVRDFSTYLNSVFTLFRIILGDFNFREIEDANRFLGPLXXXXXXXXXXXXLINMFLAIINDTYAEVKSDLAQQEDDFAFGDYFKKGYDKMMNKLSFKREKIVDIQKALQTADTNQDNKLDFEEWRTELKALGHADAEIEAVFAKYDVDGDRILNEDEQRKMQEDLEGQKAELNEEIEEVERAKGDASRIKS----KMSVRXXXXXXXXXXXXXXTRIPFEEFTVLSRRVDRVEHSIGSIVSKIDAVLLKLEAMDKAKIKRRETMTKLLDSISEQSSQGGDDN-KRERLEKLVRDELETWDSETA 2674
+S + E +K+ LREL+ Y+ F+++LCILT+GM S +YY+T++M LF++ P F+++++M+ FW F + L++GLYW+ + + T D + +I++EN LLG PR+RQ+RVRN SC++P D + EIKECY YS S ED+ F NG+AW Y++E +LNG G + TY G G+ L+ + + +A LK N+WLDRGTRA FIDF+VYNANINLFC+V LL+E+PATGG IP ++F+ LKL+RYVT D F+ ACE IF F+ YY +EE++EI HKL YF+ FWN +D+++V++ +V + N+YRT V LLQ L+ Q+ + NF+ L YWQ FN+ AV VF WIK+FK+I+FN+TM+QL +T++RCAKD+ GFA+MFFIIFLAYAQ YL+FGTQV DFST+ +FT FRIILGD NF EIE+ANR LGP++F ++VFF+FF+L+NMFLAIINDTY+EVKSDLAQQ+ + D +KGY K + KL K+ + DI ++L+ KL+F+E R +LK GH DAEIEA+F KYD DGD+ L E E ++M++DLE ++ +L+ + + R S +S + +D + + + +EEF VL RRVDR+EHSIGSIVSKIDAV++KLE M++AK+KRRE + +LLD ++E G D RE++E+LVR+ELE W+S+ A
Sbjct: 209 SSTNREKYLKSVLRELVTYLLFLIVLCILTYGMMSSNVYYYTRMMSQLFLDTPVSKTEKTNFKTLSSMEDFWKFTEGSLLDGLYWKMQPSNQ--TEADNRSFIFYENLLLGVPRIRQLRVRNGSCSIPQDLRDEIKECYDVYSVSSEDRAPFGPRNGTAWIYTSEKDLNGSSHWGIIATYSGAGYYLDLSRTREETAAQVASLKKNVWLDRGTRATFIDFSVYNANINLFCVVRLLVEFPATGGVIPSWQFQPLKLIRYVTTFDFFLAACEIIFCFFIFYYVVEEILEIRIHKLHYFRSFWNCLDVVIVVLSVVAIGINIYRTSNVEVLLQ-FLEDQNTFPNFEHLAYWQIQFNNIAAVTVFFVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFAIMFFIIFLAYAQLAYLVFGTQVDDFSTFQECIFTQFRIILGDINFAEIEEANRVLGPIYFTTFVFFMFFILLNMFLAIINDTYSEVKSDLAQQKAEMELSDLIRKGYHKALVKLKLKKNTVDDISESLRQG----GGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMRDDLEKEREDLDLDHSSLPRPMSSRSFPRSLDDSEEDDDEDSGHSSRRRGSISSGVSYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLDGVAEDERLGRDSEIHREQMERLVREELERWESDDA 921 The following BLAST results are available for this feature:
BLAST of TCONS_00025318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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