TCONS_00025317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025317
Unique NameTCONS_00025317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025317 ID=TCONS_00025317|Name=TCONS_00025317|organism=Clytia hemisphaerica|type=transcript|length=1560bp
CTTTTTCAATAGTTTTCCGCTCTCTGGCAAGCCTTGGCCCATCAATGCAG
ACAGCACAGTGTAATTCCAATGTACTCTTTGGGTAGCCAACATCTCAAAA
GCTTTGATGCATTCTACAGTGGAGGGGATCCAACAACTGGCTGCAGGGAC
CAACACCATCACCAGATTCACATCTTGCTCTGTGTCAGTTTGGTAGGATT
GAAGATGTGTTGGCGCCGCAAGGTTGATCCACACTTTGGCGACATTCAAA
CCGCCCGTAGCTGTTTTCTTGATGATCGGGTTCTTAGTGGTTGCATTGAG
GTCCTTCTTTGATTCTTGGTTCCGGCTCTCCTTGTTAAAAGTGCTTGATC
TGCGACTTCCACGTGTGTGGTCGGACCCAGAGAAGAGACTGGATGGAGTC
TCGTCATCATCTAAATCAGAGACATCTCCAGCTTCCCCAGGATCAATATC
CAATGCTACATATCCTTTCCTTGTACTGGTGGATTTCTGTGCAAAACTAC
TTGCAGCTGAACTGATGGTAGAGTCACTTCCCAATGGTTCGTAAGgagtt
ttctttttcaacattcGCAATTGAATGGCATCTTTCTCGTCTATTTCCTC
AAAAAAGACATTTTCATCCTGATCATCTATTGATGGTTGAGGGGGATCCT
CAAGATTTAGTACTGTTTCTTTTGGTTGTTGTGACGTTGACTGTTTCCTG
TTGTTGACACTGTTTTCTCgtgtaatgtttattttttcttgTGTGTGACT
TGCTTTCAttgtttcttcctttttctcttCTTCAAAACACTCACTATTGA
GTTCGGTCCTCAAAGAGCCTGATAAAGTGATCTCATTCATGCCAGCTTCA
AAAATGATCTCACCAAACTCATCTTGTTTTGGTGAGTCAACAACTGAAAC
ATTATCACCGTACAGATTCCCTCCCTTCCTTACCAAAAAGTCAATTCGAG
TCTTCTCTCTAGCAATAGATGTGAATTTAGATTCTTTATCCGAAGGGCCT
TCCAGATGCAATAGCTGCATTTTTAACGATTGTAAATCACCAGAGAAAAT
CGTATAATCGGATATGCTTCTTTTCTTTAGTGTCTCTATAATATCTGAGG
TAATAACTGGACCATTCAAATCGTTCAACTTCTGACAGATCCTCGATGCG
CAGTGAAACATGGCCGGATCATCATTCTTTAAGAAAGCTTTCAGTTTCAG
GTTAGTTAACACAGCTGCGAAAAGAGAAGAGTCTGAATTTCGGACATCAA
AATCGTACGAATATTCGCTTCCACATTTTGCGGACAGAGATGACTGTTCG
GATGGTGTGTAGCGTTCGCCTGAAATTTGAAAGAATAAGAGTTTGAGCTC
AGGTAAGAGAATATCAATGGCAAGTTTCTCATTGTGCGTTTTTGTTGATA
GTTCTTTTTCAACTTGTTCTTTTGACTGGTACGTGATGATCTCGAAGAGA
GTTTGTTCTTTGAACTtttgtttggatttttcaaTGCATTTGCTGTGGAT
GGCATCCAAAAGGTGACATAAATGTCGCGACTTCGATAAAGGTGATAGTG
ACGTCACGAA
Run BLAST on NCBI

transcript from alignment at sc0000531:90160..91791-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025317 ID=TCONS_00025317|Name=TCONS_00025317|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at sc0000531:90160..91791- (Clytia hemisphaerica)
CTTTTTCAATAGTTTTCCGCTCTCTGGCAAGCCTTGGCCCATCAATGCAG
ACAGCACAGTGTAATTCCAATGTACTCTTTGGGTAGCCAACATCTCAAAA
GCTTTGATGCATTCTACAGTGGAGGGGATCCAACAACTGGCTGCAGGGAC
CAACACCATCACCAGATTCACATCTTGCTCTGTGTCAGTTTGGTAGGATT
GAAGATGTGTTGGCGCCGCAAGGTTGATCCACACTTTGGCGACATTCAAA
CCGCCCGTAGCTGTTTTCTTGATGATCGGGTTCTTAGTGGTTGCATTGAG
GTCCTTCTTTGATTCTTGGTTCCGGCTCTCCTTGTTAAAAGTGCTTGATC
TGCGACTTCCACGTGTGTGGTCGGACCCAGAGAAGAGACTGGATGGAGTC
TCGTCATCATCTAAATCAGAGACATCTCCAGCTTCCCCAGGATCAATATC
CAATGCTACATATCCTTTCCTTGTACTGGTGGATTTCTGTGCAAAACTAC
TTGCAGCTGAACTGATGGTAGAGTCACTTCCCAATGGTTCGTAAGGAGTT
TTCTTTTTCAACATTCGCAATTGAATGGCATCTTTCTCGTCTATTTCCTC
AAAAAAGACATTTTCATCCTGATCATCTATTGATGGTTGAGGGGGATCCT
CAAGATTTAGTACTGTTTCTTTTGGTTGTTGTGACGTTGACTGTTTCCTG
TTGTTGACACTGTTTTCTCGTGTAATGTTTATTTTTTCTTGTGTGTGACT
TGCTTTCATTGTTTCTTCCTTTTTCTCTTCTTCAAAACACTCACTATTGA
GTTCGGTCCTCAAAGAGCCTGATAAAGTGATCTCATTCATGCCAGCTTCA
AAAATGATCTCACCAAACTCATCTTGTTTTGGTGAGTCAACAACTGAAAC
ATTATCACCGTACAGATTCCCTCCCTTCCTTACCAAAAAGTCAATTCGAG
TCTTCTCTCTAGCAATAGATGTGAATTTAGATTCTTTATCCGAAGGGCCT
TCCAGGTGCAATAGCTGCATTTTTANCTCTCTAGCAATAGATGTGAATTT
AGATTCTTTATCCGAAGGACCTTCCAGATGCAATAGCTGCATTTTTAACG
ATTGTAAATCACCAGAGAAAATCGTATAATCGGATATGCTTCTTTTCTTT
AGTGTCTCTATAATATCTGAGGTAATAACTGGACCATTCAAATCGTTCAA
CTTCTGACAGATCCTCGATGCGCAGTGAAACATGGCCGGATCATCATTCT
TTAAGAAAGCTTTCAGTTTCAGGTTAGTTAACACAGCTGCGAAAAGAGAA
GAGTCTGAATTTCGGACATCAAAATCGTACGAATATTCGCTTCCACATTT
TGCGGACAGAGATGACTGTTCGGATGGTGTGTAGCGTTCGCCTGAAATTT
GAAAGAATAAGAGTTTGAGCTCAGGTAAGAGAATATCAATGGCAAGTTTC
TCATTGTGCGTTTTTGTTGATAGTTCTTTTTCAACTTGTTCTTTTGACTG
GTACGTGATGATCTCGAAGAGAGTTTGTTCTTTGAACTTTTGTTTGGATT
TTTCAATGCATTTGCTGTGGATGGCATCCAAAAGGTGACATAAATGTCGC
GACTTCGATAAAGGTGATAGTGACGTCACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014217XLOC_014217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025317-exon-sc0000531-1575043694:90787..91791TCONS_00025317-exon-sc0000531-1575043694:90787..91791Clytia hemisphaericaexon
TCONS_00025317-exon-sc0000531-1575043694:90160..90714TCONS_00025317-exon-sc0000531-1575043694:90160..90714Clytia hemisphaericaexon
TCONS_00025317-exon-sc0000531-1510915933:90787..91791TCONS_00025317-exon-sc0000531-1510915933:90787..91791Clytia hemisphaericaexon
TCONS_00025317-exon-sc0000531-1510915933:90160..90714TCONS_00025317-exon-sc0000531-1510915933:90160..90714Clytia hemisphaericaexon
TCONS_00025317-exon-sc0000531-1491911889:90787..91791TCONS_00025317-exon-sc0000531-1491911889:90787..91791Clytia hemisphaericaexon
TCONS_00025317-exon-sc0000531-1491911889:90160..90714TCONS_00025317-exon-sc0000531-1491911889:90160..90714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000531supercontigsc0000531:90160..91791 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.171072	2.97605	1.84302	0.45109	1.22035	0.256246	0.54098	1.55188	0.521379	0.725873	0	0.426755	0.353843	0	0	0.176684	0	0.0115872	0.416334	0.387532	0.91519	1.29342	1.2689	0	0	0.114885	0.104819
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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