TCONS_00025316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025316
Unique NameTCONS_00025316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025316 ID=TCONS_00025316|Name=TCONS_00025316|organism=Clytia hemisphaerica|type=transcript|length=578bp
AATTACCTTGAAACCTAAGAAAAACTGTCTCCAGAAATATCCCAAAACTC
TGATAGCTGAAGGTCCTGCTTCAAGCTCTATTGTGAATTGATCTGGCGAC
AAACCCAGTGGTTCCTTCGCATCATTCTTGATGCCGCATTGTTCGTTGAT
TCTGGTTGTTGTTTCATCCTGCGAAACCATGGGATAATACTTATAAAACA
GATTGAGGATGATGACTGGGACGGACCAAACATCGATCCAAACATTGCTT
CCAGCTGTCCGTCTGCGCCATCCCTTACTCAATTGATCCTCCAGGCTAAC
TCCACTGTCAACCTCATCATACATATCCAGGCTATCAGGCTGGTCGAATT
CTGCAGTGTTTTGTTGCTTGGCAGATGCTTTAGGATACATATGTCGGTCA
CTGTTCTTAGCAAGGGATATTACACTACGACGAATAGTGTTCGATTCTGG
AATAAATGTTCTCAACATAATGGTTTCACCACGAAAGAAGAATTTCATTT
CAGATTTTTCTGGTTGGTAATGTGTGAAGGGCAGCACAAAATTGATGTCT
AGATTTTCTCCACACAAAGCAAGTTCAC
Run BLAST on NCBI

transcript from alignment at sc0000531:83965..84640-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025316 ID=TCONS_00025316|Name=TCONS_00025316|organism=Clytia hemisphaerica|type=transcript|length=676bp|location=Sequence derived from alignment at sc0000531:83965..84640- (Clytia hemisphaerica)
AATTACCTTGAAACCTAAGAAAAACTGTCTCCAGAAATATCCCAAAACTC
TGATAGCTGAAGGTCCTGCTTCAAGCTCTATTGTGAATTGATCTGGCGAC
AAACCCAGTGGTTCCTTCGCATCATTCTTGATGCCGCATTGTTCGTTGAT
TCTGGTTGTTGTTTCATCCTGCGAAACCATGGGATAATACTTATAAAACA
GATTGAGGATGATGACTGGGACGGACCAAACATCGATCCAAACATTGCTT
CCAGCTGTCCGTCTGCGCCATCCCTTACTCAATTGATCCTCCAGGCTAAC
TCCACTGTCAACCTCATCATACATATCCAGGCTATCAGGTNATTGCTTCC
AGCTGTCCGTCTGCGCCATCCCTTACTCAATTGATCCTCAAGGCTAACTC
CACTGTCAACCTCATCATACATATCCAGACTATCAGGCTGGTCGAATTCT
GCAGTGTTTTGTTGCTTGGCAGATGCTTTAGGATACATATGTCGGTCACT
GTTCTTAGCAAGGGATATTACACTACGACGAATAGTGTTCGATTCTGGAA
TAAATGTTCTCAACATAATGGTTTCACCACGAAAGAAGAATTTCATTTCA
GATTTTTCTGGTTGGTAATGTGTGAAGGGCAGCACAAAATTGATGTCTAG
ATTTTCTCCACACAAAGCAAGTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014216XLOC_014216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025316-exon-sc0000531-1575043694:84303..84640TCONS_00025316-exon-sc0000531-1575043694:84303..84640Clytia hemisphaericaexon
TCONS_00025316-exon-sc0000531-1575043694:83965..84204TCONS_00025316-exon-sc0000531-1575043694:83965..84204Clytia hemisphaericaexon
TCONS_00025316-exon-sc0000531-1510915933:84303..84640TCONS_00025316-exon-sc0000531-1510915933:84303..84640Clytia hemisphaericaexon
TCONS_00025316-exon-sc0000531-1510915933:83965..84204TCONS_00025316-exon-sc0000531-1510915933:83965..84204Clytia hemisphaericaexon
TCONS_00025316-exon-sc0000531-1491911889:84303..84640TCONS_00025316-exon-sc0000531-1491911889:84303..84640Clytia hemisphaericaexon
TCONS_00025316-exon-sc0000531-1491911889:83965..84204TCONS_00025316-exon-sc0000531-1491911889:83965..84204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000531supercontigsc0000531:83965..84640 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457034	0.351923	0	0.146632	1.5441	2.07469	0	0	0.888379	0.847037	0.838728	0.292668	0	0.989637	0	0.821349	0.392659	1.34265	2.21373	1.31706	0.800109	0.247813	0	9.63028e-05	1.21573	0.240624	0.234741	0.162169	0.0244279	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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