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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025314 ID=TCONS_00025314|Name=TCONS_00025314|organism=Clytia hemisphaerica|type=transcript|length=3865bpRun BLAST on NCBI transcript from alignment at sc0000531:42429..57768- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025314 ID=TCONS_00025314|Name=TCONS_00025314|organism=Clytia hemisphaerica|type=transcript|length=15340bp|location=Sequence derived from alignment at sc0000531:42429..57768- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025314 vs. Swiss-Prot (Human)
Match: CIP2A (Protein CIP2A OS=Homo sapiens GN=KIAA1524 PE=1 SV=2) HSP 1 Score: 315.079 bits (806), Expect = 1.594e-90 Identity = 289/932 (31.01%), Postives = 475/932 (50.97%), Query Frame = 2
Query: 68 DTTACLKTLCTAYNDYQKSNTDEAIKDLQRQIDVIVGVTSHGASLQDL-SPKQLLYAEALSVLVSLINEPNMKNQMYLKAITALLQLSNDYETKEALQYTFNLVTSLINFVLRLPTNTTKQLISQALNLLAKLTYKNRNLNLNSTQMFDFLKFVIKKVQTATPDQCLPSLAILANLCHKNIEVQAHIKSLSDIKLLYKTLFKYLSNSNNKAYSVTSLSILSSLAMEEESGEKIFSGNNLINIIHLVFQAVVTTDNLTILQYSVDLIIDLLNQNKTFKIIAESNQLYETY---VIRILNQLHSTDAHIVIKILELLNAFCGKSXXXXXXXXXXXXQIVDNDEETQMQDDHISLSPMQATVHWISKIQTLSTSVSHANILAMNFAREIVNESIEAKGTGALFAYFMELIPICLKNLFVDMKTDEEKVLKQILQRVSTSAELLISLSRDANARQAILEKFNIDHLMQLLNNIFVYYTDDLK-AERSPVHQYSDAVVHVVFRSLELMVALKSFVPSGNEKYGALLQDVRLLPFLSRGFISSSKYLVHASLHIFTEALKYKEFQVKGLGESITLLNQSRQIELKNLRIGRP-PTDKHQIQPVMSVATPPLQD-ITNMKDSMGNITALTEKLRKGLDIKDS----KVSDIMDYYEHKLAALTGRERHLEDLMEAKTKALSQSDRLLSQFRCRQAQSDAECLKLRTLLKTSEKKCETDSVRMDQFLKTKNTLESQISRLNEQMEILQQDSXXXXXXXXXXXXXXXXXXAVQKRLVASEEENASLAAMNDCLHKNSEKLKSKLEVSNEHIKMTEGEVKKLNQIINKNEETIKERDNMIKKAESMY----QTKLND--IDKLSXXXXXXXXXXXXXXXSLHDT-------MIKVSSLESTIIDHESSIKDKEDQISQLQEEVDKQSQITAMINNLTSGRMN 2791
D+TACLK+L + Y+ ++ L R ++VI G L L + Q+L +E LS LV L+ +PN+ + L I L QL+ D ET++ LQ T+NL + L V R ++ T + Q + LL KLTY N + + + + + F+I +Q++ + +P L +LANLC N+ VQ HIK+LS++K Y+TL L++S+ V +LSILSSL + EE GEK+F N+ L+F ++ D +YSVDL++DLL K IA+ YE + + ++L L+ D K+LELL AFC + R L ++ +Q + L P A + W+S Q L S + ++LA+ +EI + I+A + + L+P L L + +E + ++ +R++ + E+L++L D + I + L+ F Y DL + + V+ ++L+L+ LK VP + +LQD RL+ L+ S ++ V + L I EA +F LGESI N RQ E +++ P + H + TP L+D + + NI L EKL+ G+ +KD ++SDIMD YE KL+ L +E L+DL+E K AL+Q+DRL++Q RC++ Q++ E L ++L+ E+K E SV LK + +ES+ R +E L Q + KL+ + +++ T + + +R ++E++N L D L+K E +K KL NE +K E K + Q+I K E+ + ++ ++ + + +TK+ + I L KER++ E+ + K L T IK SSLE E +++KE + QEE++K S + AMI++L+ G++N
Sbjct: 2 DSTACLKSLLLTVSQYKAVKSEANATQLLRHLEVI-----SGQKLTRLFTSNQILTSECLSCLVELLEDPNISASLILSIIGLLSQLAVDIETRDCLQNTYNLNSVLAGVVCR--SSHTDSVFLQCIQLLQKLTY-NVKIFYSGANIDELITFLIDHIQSSEDELKMPCLGLLANLCRHNLSVQTHIKTLSNVKSFYRTLITLLAHSSLTVV-VFALSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPK----IADYLTRYEHFSSCLHQVLGLLNGKDPDSSSKVLELLLAFCSVTQLRHMLTQMMFEQSPPGS--ATLGSHTKCLEPTVALLRWLS--QPLDGS-ENCSVLALELFKEIFEDVIDAANCSSADRFVTLLLPTILDQLQFTEQNLDEALTRKKCERIAKAIEVLLTLCGDDTLKMHIAKILTTVKCTTLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLDLINKLKPLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLRILLEAAPLPDFPALVLGESIAANNAYRQQETEHIPRKMPWQSSNHSFPTSIKCLTPHLKDGVPGL-----NIEELIEKLQSGMVVKDQICDVRISDIMDVYEMKLSTLASKESRLQDLLETKALALAQADRLIAQHRCQRTQAETEARTLASMLREVERKNEELSV----LLKAQQ-VESE--RAQSDIEHLFQHNRKLESVAEEHEILTKSYMELLQRNESTEKKNKDLQITCDSLNKQIETVK-KL---NESLK--EQNEKSIAQLIEKEEQRKEVQNQLVDREHKLANLHQKTKVQEEKIKTLQKEREDKEETIDILRKELSRTEQIRKELSIKASSLEVQKAQLEGRLEEKESLVKLQQEELNKHSHMIAMIHSLSGGKIN 897 The following BLAST results are available for this feature:
BLAST of TCONS_00025314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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