TCONS_00025308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025308
Unique NameTCONS_00025308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025308 ID=TCONS_00025308|Name=TCONS_00025308|organism=Clytia hemisphaerica|type=transcript|length=1179bp
GTGAATAGCTGGCTGAAAATAGGTGTATTTTTGTTAATTAGttgataaaa
atttacaaatttgataCAAAAGTATTAACAACTCTATGAAAAGATATATG
TATAACAAACAGCAAAAACAGCGAAAATATAGGATCGTcgtttccaaaaa
aatttgtcagataGATTCAAATGAATACCCTCTTTGCTAATTTTGAAAGT
ACAttgtttttttcaacattccTCTTTCATTAGATATGGATGCTATGATG
ATAGGAAGATGTTGTTtgaatcaaacaaaaaacaggCGAACCACTGCATC
AGAACACACCACGGATACTGGTGTTTACTCAATTGATGTGTCACTGCACC
CAACTCCATTAATTTACCAGCAAACTCAAATTTCTTCATCAGAATTGCAT
AATGGAGTGGAGGGTTACCACGTATGTCCAGTAAATTGATATCTGCTCCA
TAGTCGACCATAGCCTCAATGCAGGAAGTGGAGCCACTCATGGCTGCAAA
GTGGATTGCAGCTATACCATCTTCATTGAATGCATTAATGTCTAAGTTTG
GATAACTTTTAAAAACGTCATGTAATAAATTCAAGTCTTTATATTGAATA
ATATCAAATAAAACTGCCGTTGCTGGTTGTGTATTACCTTCGTTTGTTat
ttttgatggttttgatTTCGCTTTAGTAGTTACTTTCGATGAGGATTTTT
CAGAAATCTTTGGACTATCCTTTAAAGAACCAGATTCCTCTTGACAAAGT
GAACAGCTGGACGAACTTTTCTTGAGAAAACGTAACCGTTTTAAACTTAG
TCTTTGTTTTTGCTGACGATGCATTTTTGAACAAGTCAAGTCAGTttcac
tttttgtttttgttatttcaTTGTTATTCTGTTCATCTGTAGTAGTCGCA
GTCTTGGTCACATCAGTTTGGTTGTTCACTACAACTTGACAAatatctgt
ttttgtttttgtggtaGTTTCTGTTGTATCAATTTGATCGTCTTTTCGTT
TATTCATTggagattttttaaataaaacagCACTCCAGGAAGATTGCGAT
TTCTGTTTTGCCATATTGTGTGTGTTTTCCTccttgaaagaaaaaatgaa
cagtTATTATAGAAATTGACACTGTTACCAATATGGACTTCAACTAagca
aagcaaaatctttgtttAAACTCTCCTTG
Run BLAST on NCBI

transcript from alignment at sc0000531:217261..218862+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025308 ID=TCONS_00025308|Name=TCONS_00025308|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at sc0000531:217261..218862+ (Clytia hemisphaerica)
GTGAATAGCTGGCTGAAAATAGGTGTATTTTTGTTAATTAGttgataaaa
atttacaaatttgataCAAAAGTATTAACAACTCTATGAAAAGATATATG
TATAACAAACAGCAAAAACAGCGAAAATATAGGATCGTcgtttccaaaaa
aatttgtcagataGATTCAAATGAATACCCTCTTTGCTAATTTTGAAAGT
ACAttgtttttttcaacattccTCTTTCATTAGATATGGATGCTATGATG
ATAGGAAGATGTTGTTtgaatcaaacaaaaaacaggCGAACCACTGCATC
AGAACACACCACGGTAAGTGGTTTTGCAATGAAATACCATGTCCAGGGTA
GATAAGGTCTAACTGATTGGTAGAATGcaaaatgaataaatatttcatcG
CAGTAATCAGATCTACAGTAAGAAACCTCGCTCTTGCATTAGTAGACAGT
AGTATAAATATCTTTTGGAACACTTCTGTCTCAAaactaaattgaaaaat
atttccccTGTCAAGGAATGATTCATGGCATTTCAAGTTTATCTCTATAT
ATCAAATTTTCTTCTAAATAAATCCTCTTCAAAATTGTGGATGTTCAACC
TAAggagaaagaaatcaaatttgAGACTATTTTGATCATCTTCAAATGTG
GAAAATAATATATGAATCCCCAAAGATATCCAAAATTATTCGTCATCAAA
AATGCCAAGTATCTCTCGATTTCTTTTTCAGTTCAGGATACTGGTGTTTA
CTCAATTGATGTGTCACTGCACCCAACTCCATTAATTTACCAGCAAACTC
AAATTTCTTCATCAGAATTGCATAATGGAGTGGAGGGTTACCACGTATGT
CCAGTAAATTGATATCTGCTCCATAGTCGACCATAGCCTCAATGCAGGAA
GTGGAGCCACTCATGGCTGCAAAGTGGATTGCAGCTATACCATCTTCATT
GAATGCATTAATGTCTAAGTTTGGATAACTTTTAAAAACGTCATGTAATA
AATTCAAGTCTTTATATTGAATAATATCAAATAAAACTGCCGTTGCTGGT
TGTGTATTACCTTCGTTTGTTatttttgatggttttgatTTCGCTTTAGT
AGTTACTTTCGATGAGGATTTTTCAGAAATCTTTGGACTATCCTTTAAAG
AACCAGATTCCTCTTGACAAAGTGAACAGCTGGACGAACTTTTCTTGAGA
AAACGTAACCGTTTTAAACTTAGTCTTTGTTTTTGCTGACGATGCATTTT
TGAACAAGTCAAGTCAGTttcactttttgtttttgttatttcaTTGTTAT
TCTGTTCATCTGTAGTAGTCGCAGTCTTGGTCACATCAGTTTGGTTGTTC
ACTACAACTTGACAAatatctgtttttgtttttgtggtaGTTTCTGTTGT
ATCAATTTGATCGTCTTTTCGTTTATTCATTggagattttttaaataaaa
cagCACTCCAGGAAGATTGCGATTTCTGTTTTGCCATATTGTGTGTGTTT
TCCTccttgaaagaaaaaatgaacagtTATTATAGAAATTGACACTGTTA
CCAATATGGACTTCAACTAagcaaagcaaaatctttgtttAAACTCTCCT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014212XLOC_014212Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025308-exon-sc0000531-1491911889:217261..217573TCONS_00025308-exon-sc0000531-1491911889:217261..217573Clytia hemisphaericaexon
TCONS_00025308-exon-sc0000531-1510915933:217261..217573TCONS_00025308-exon-sc0000531-1510915933:217261..217573Clytia hemisphaericaexon
TCONS_00025308-exon-sc0000531-1575043694:217261..217573TCONS_00025308-exon-sc0000531-1575043694:217261..217573Clytia hemisphaericaexon
TCONS_00025308-exon-sc0000531-1491911889:217997..218862TCONS_00025308-exon-sc0000531-1491911889:217997..218862Clytia hemisphaericaexon
TCONS_00025308-exon-sc0000531-1510915933:217997..218862TCONS_00025308-exon-sc0000531-1510915933:217997..218862Clytia hemisphaericaexon
TCONS_00025308-exon-sc0000531-1575043694:217997..218862TCONS_00025308-exon-sc0000531-1575043694:217997..218862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000531supercontigsc0000531:217261..218862 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00459893	0	0.00230827	0	0	0.013205	0.0749979	0	4.35779e-10	0	1.00664e-07	0.305855	0	0	0	0.115279	0	0	0	0.650962	0.481829	2.11089	0	0	1.1763e-09	0.000169633	0	2.59396e-05	9.03025e-06	0.00694284
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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