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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025306 ID=TCONS_00025306|Name=TCONS_00025306|organism=Clytia hemisphaerica|type=transcript|length=4192bpRun BLAST on NCBI transcript from alignment at sc0000531:107655..114779+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025306 ID=TCONS_00025306|Name=TCONS_00025306|organism=Clytia hemisphaerica|type=transcript|length=7125bp|location=Sequence derived from alignment at sc0000531:107655..114779+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025306 vs. Swiss-Prot (Human)
Match: K1109 (Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2) HSP 1 Score: 311.227 bits (796), Expect = 7.286e-86 Identity = 195/654 (29.82%), Postives = 326/654 (49.85%), Query Frame = 2
Query: 1544 WETRVIIAVNVSRVDVSTNMGNTMGQATWSTNDLRTNASVLINNIGLSSASIDLSVRQGALDAHGGVIGGYIEVYEIAVDGKFVENYGDTPFHYANIAMSKGEVRLDYMGSSIVMASLSSFSCKLEDHWLIPENLSEQNSGESARXXXXXXXXXXXXXXXKESGNAAELKSCEIYINCDTRWDDLQIIISRSTATDLAKMVVKLQDFLDQQHRSGIRALHTLSQSNTPGGGGYYSSINMQKVPXXXXXXXXXXPILKYQHWIELMNGLYGLQLNNLPARIPDRNVVLGGRLSLCGNFASLACFHGANFRTQNWGLFTVCEPSLQFTSET-RVVEKSCQVMRAACVHDVTFKLGKSEKHTITERRKSTVNMYDFMATVRRVSRGRR-NPPALGAPVQEWLNFVNTTSDDEIPM----KAXXXXXXXXXXXXXLTKG-QGGSRKVSFAPKVRYENESEVILALPRLKVQLTTEHDQPMTSLISKRLIYNGKRVSKLNFPTAQGVHF---VEMSFLSTFDDAIHVSMDVSLLFYLHDLILSYMKEQETXXXXXXXXXXXXXXXXXXXAGNEPQATVTKTEQAIKKEEKYREFRVKIWRLEPRISLLSWAGKRMEPVSIDWVLEKLGFTHANMTIPKWVQRGALDPMDYTLAVVMEHL 3475
WET V+ A+N+ +++V NM N MG TW+T+ L++ + + + S+ + + + LD+ GGV+GG I+V + + E+ P H I M E R+DYMGSSI+M S+ KL+D W + NL + +++ EI+++ D +WD Q++ISRST DL K+ +KLQ+F QQ + RAL T P + N++K + + ++HW ++ + G ++ +P+ + GG +SL GN +LACFHG NFR+++W LF + EP++ F +E ++ E V + F LG + T K + MAT+ +++R R NPP A V+EW N+V T ++E+ + A++++ + SL G +GGS Y +E+E I ALPR+++ + H V + P+ Q VE S ++ F D I V+MD L+ +LHDL+ +Y+KE+E ++ + ++ + + + +R+F W LEP + L+SW G++++PV +D++L+KLGF HA TIPKW+QRG +DP+D L+V+++ L
Sbjct: 4400 WETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTEARVDYMGSSILMGIFSNADLKLQDEWKV--NL-------------------------YNTLDSSITDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGP--VPYLPPKTMTSNLEK-----SSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHN-----TMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNTENSTTVKNSSLLSGFRGGSS---------YNHETETIFALPRMQLDFKSIH------------------VQEPQEPSLQDASLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSPIIIHDDNSSDKDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKL 4987 HSP 2 Score: 160.229 bits (404), Expect = 3.997e-39 Identity = 125/335 (37.31%), Postives = 179/335 (53.43%), Query Frame = 2
Query: 314 KSATLNASVQVESLSKETIVKPSLLDYLEKAFEPIMMKDVEDTNQSIDNE------------XXXXXXXXXXXXXXXXXXFPVDVVVLIRVQPSDIRFSCFPISKVECLLRIPSLDFAITS---------------------------TPPKQPSSGCPGLRKKPGRPRXXXXXXXXXXXXXXXXEVKSGTSFTVCLAKFSFCIFHPYG--KQYGSSADTRVGSAMFSDRRKDSRASRNQQMSGRKDSLSLNVEFIKFNLSR----------------NTIKNLDDQKTSVQISAICDIGSAAFNYDMRRLNEILDVPKAWYKRSLMQRIFLGKE 1147
K+A L A V ++SL +E ++ P LLD+LEKA E I + VE ++ ++ T S++SSS S+ SFPVDVVV +RVQPS I+FSC P+S+VEC+L++PSLD +S T +G PG G P + S + T +S SG SFT C++ FS +FHPYG KQ + + GS + ++ + ++GRKDSLS+N+EF+K +LSR + +D T + ISA+CDIGSA+F YDMRRL+EIL P+AWY+RS+ +R+FLG +
Sbjct: 3959 KTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPVERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELETLGTTYPAETLSPGGNATQSGTKTSASKTGIPG-SSGLGSPLGRSRHSSSQSDLTSSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKTAVSGLTPGSGGLGNVDEEPTS-----VTGRKDSLSINLEFVKVSLSRIRRSGGASFFESQSVSKSASKMD--TTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQ 4285 The following BLAST results are available for this feature:
BLAST of TCONS_00025306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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