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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025304 ID=TCONS_00025304|Name=TCONS_00025304|organism=Clytia hemisphaerica|type=transcript|length=6646bpRun BLAST on NCBI protein sequence of TCONS_00025304-protein >TCONS_00025304-protein ID=TCONS_00025304-protein|Name=TCONS_00025304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1181bp MVIDIESGKCTLHSSSIENLETTPNKDAEKPRRTSDTTDMPPPQRNRMLRRun BLAST on NCBI transcript from alignment at sc0000531:99490..114779+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025304 ID=TCONS_00025304|Name=TCONS_00025304|organism=Clytia hemisphaerica|type=transcript|length=15290bp|location=Sequence derived from alignment at sc0000531:99490..114779+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000531:99490..114779+ >TCONS_00025304 ID=TCONS_00025304|Name=TCONS_00025304|organism=Clytia hemisphaerica|type=CDS|length=39006bp|location=Sequence derived from alignment at sc0000531:99490..114779+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00025304 vs. Swiss-Prot (Human)
Match: K1109 (Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2) HSP 1 Score: 328.946 bits (842), Expect = 5.385e-90 Identity = 207/622 (33.28%), Postives = 333/622 (53.54%), Query Frame = 3
Query: 78 RVEYKIEQINAWGNLSSKARFFCDLPYHVLSFNTKVHVVPL---PPTTHIDLPRIKVEGHY-LEIHQXXXXXXXXXXXXXXXXXR--SHGYLSVSVNIGSLEQNLTTDLLNHIIFFQKGFVKEINEVVEVVDNTEQ-VPLLH-RTRSANVEETKQPPQQVVPMIYSIKVALQGIQVTATTPSNTGIRLKTGELTMEITNQ-----NPSSSVLNMPYNPVKVYGQAQVDINIALGFFNKNS-YSSNENIYSVYANFDTSLGISNLLKEKQHTTSNMDKETILITLSKPQLFVMPSAVDKGVLVYLHYKNAYEYWMEQRAVLKTEFPAVAEHILNKLP--QQANMDELSSYLILQVTVEGLGVCLPIKEVQPQERXXXXXXXXXXXXFADTEPGPALLVTACEASVTCCSSGSFVSTGHFKKFCLRLADNFNHMENTWS--LNDEDIMNTYIIPEGTYQLCSRTILPETPTEGAQKPGKWIMTLFWKMCGVDVHLDTNIGKRLSALIKALTTLTGESDVADISSV-------AEDFETLKEKTPDTHLDGA-----VAQDLIDGEGEKKATRKMSLNLQNHWEEDSLEKQLLIQTTLVNELRRDGAHPEIIKREVKQLQEIENL 1853
+ EYK+ ++ + G ++ RF +LP H L F +KV + PP+ ++LP + + G Y +E H + P+ YL +GS E NLTTDLLNH++F QK F+KE+NEV++ V EQ +PL + +A+ ++ K ++YS+ + +GIQVTATTPS +R +TG + +E++N+ +P SS +K++G+ QVD+N+ALG K+ Y + + A F T +G+ N L+E+ +S D+E +LITL++P ++ P A D+ VL +L+YK AY+ W EQR L + + +++ LP QQ + + L LQ+TV LG+CLPI D + G AL++T +T CSS S VS GHFK FC+R AD F + W ++ + +MN ++P+GTY++CSRT + E + G W + + WKMCG+DVH+D NIGKRL+AL LTTLTGE D+ DI+ + D + + +P H + A GE + K +++ ++L Q ++++L++ GA I +E+++ Q++E++
Sbjct: 2998 KAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTADGDKPKI-------LLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSY------LKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSS--DREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGT-LFLQLTVNDLGICLPITNTAQSNHT------------GDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIHGDLVMNACVVPDGTYEVCSRTT-GQAAAESSSA-GTWTLNVLWKMCGIDVHMDPNIGKRLNALGNTLTTLTGEEDIDDIADLNSVNIADLSDEDEVDTMSPTIHTEATDYRRQAASASQPGELRGRKIMKRIVDI----------RELNEQAKVIDDLKKLGASEGTINQEIQRYQQLESV 3579 HSP 2 Score: 311.227 bits (796), Expect = 1.318e-84 Identity = 195/654 (29.82%), Postives = 326/654 (49.85%), Query Frame = 2
Query: 3998 WETRVIIAVNVSRVDVSTNMGNTMGQATWSTNDLRTNASVLINNIGLSSASIDLSVRQGALDAHGGVIGGYIEVYEIAVDGKFVENYGDTPFHYANIAMSKGEVRLDYMGSSIVMASLSSFSCKLEDHWLIPENLSEQNSGESARXXXXXXXXXXXXXXXKESGNAAELKSCEIYINCDTRWDDLQIIISRSTATDLAKMVVKLQDFLDQQHRSGIRALHTLSQSNTPGGGGYYSSINMQKVPXXXXXXXXXXPILKYQHWIELMNGLYGLQLNNLPARIPDRNVVLGGRLSLCGNFASLACFHGANFRTQNWGLFTVCEPSLQFTSET-RVVEKSCQVMRAACVHDVTFKLGKSEKHTITERRKSTVNMYDFMATVRRVSRGRR-NPPALGAPVQEWLNFVNTTSDDEIPM----KAXXXXXXXXXXXXXLTKG-QGGSRKVSFAPKVRYENESEVILALPRLKVQLTTEHDQPMTSLISKRLIYNGKRVSKLNFPTAQGVHF---VEMSFLSTFDDAIHVSMDVSLLFYLHDLILSYMKEQETXXXXXXXXXXXXXXXXXXXAGNEPQATVTKTEQAIKKEEKYREFRVKIWRLEPRISLLSWAGKRMEPVSIDWVLEKLGFTHANMTIPKWVQRGALDPMDYTLAVVMEHL 5929
WET V+ A+N+ +++V NM N MG TW+T+ L++ + + + S+ + + + LD+ GGV+GG I+V + + E+ P H I M E R+DYMGSSI+M S+ KL+D W + NL + +++ EI+++ D +WD Q++ISRST DL K+ +KLQ+F QQ + RAL T P + N++K + + ++HW ++ + G ++ +P+ + GG +SL GN +LACFHG NFR+++W LF + EP++ F +E ++ E V + F LG + T K + MAT+ +++R R NPP A V+EW N+V T ++E+ + A++++ + SL G +GGS Y +E+E I ALPR+++ + H V + P+ Q VE S ++ F D I V+MD L+ +LHDL+ +Y+KE+E ++ + ++ + + + +R+F W LEP + L+SW G++++PV +D++L+KLGF HA TIPKW+QRG +DP+D L+V+++ L
Sbjct: 4400 WETLVVFAINLKQLNVQMNMSNVMGNTTWTTSGLKSQGRLSVGSNRDREISMSVGLGRSQLDSKGGVVGGTIDVNALEMVAHISEHPNQQPSHKIQITMGSTEARVDYMGSSILMGIFSNADLKLQDEWKV--NL-------------------------YNTLDSSITDKSEIFVHGDLKWDIFQVMISRSTTPDLIKIGMKLQEFFTQQFDTSKRALSTWGP--VPYLPPKTMTSNLEK-----SSQEQLLDAAHHRHWPGVLKVVSGCHISLFQIPLPEDGMQFGGSMSLHGNHMTLACFHGPNFRSKSWALFHLEEPNIAFWTEAQKIWEDGSSDHSTYIVQTLDFHLGHN-----TMVTKPCGALESPMATITKITRRRHENPPHGVASVKEWFNYVTATRNEELNLLRNVDANNTENSTTVKNSSLLSGFRGGSS---------YNHETETIFALPRMQLDFKSIH------------------VQEPQEPSLQDASLKPKVECSVVTEFTDHICVTMDAELIMFLHDLVSAYLKEKEKAIFPPRILSTRPGQKSPIIIHDDNSSDKDREDSITYTTVDWRDFMCNTWHLEPTLRLISWTGRKIDPVGVDYILQKLGFHHARTTIPKWLQRGVMDPLDKVLSVLIKKL 4987 HSP 3 Score: 174.481 bits (441), Expect = 4.408e-43 Identity = 166/537 (30.91%), Postives = 248/537 (46.18%), Query Frame = 2
Query: 2336 STHDLRSENSDT---NRSTAVPAAEA-LDFEFNMVIDIESGKCTLHSSSIENLETTPNKDAEKPRRTSDTTDMPPPQRNRMLRPMRSVGNILNTNNPPSTT-------EHTLLLIPGVKVRLYYLSKFTSETKNISTDLDNLSVTGSTINRPLLS-------------------------------------------------KSATLNASVQVESLSKETIVKPSLLDYLEKAFEPIMMKDVEDTNQSIDNE------------XXXXXXXXXXXXXXXXXXFPVDVVVLIRVQPSDIRFSCFPISKVECLLRIPSLDFAITS---------------------------TPPKQPSSGCPGLRKKPGRPRXXXXXXXXXXXXXXXXEVKSGTSFTVCLAKFSFCIFHPYG--KQYGSSADTRVGSAMFSDRRKDSRASRNQQMSGRKDSLSLNVEFIKFNLSR----NTIKNLDDQKTS----------VQISAICDIGSAAFNYDMRRLNEILDVPKAWYKRSLMQRIFLGKE 3601
+ H L +E T NRS + A E +DFE ++ ++I+SGKC LH +++ + R + P ++ + S +++ PS+ E T+ IPGV V+L+Y +K + T+ N S GS++ R L K+A L A V ++SL +E ++ P LLD+LEKA E I + VE ++ ++ T S++SSS S+ SFPVDVVV +RVQPS I+FSC P+S+VEC+L++PSLD +S T +G PG G P + S + T +S SG SFT C++ FS +FHPYG KQ + + GS + ++ + ++GRKDSLS+N+EF+K +LSR + Q S + ISA+CDIGSA+F YDMRRL+EIL P+AWY+RS+ +R+FLG +
Sbjct: 3762 AVHQLFTERWPTTPVNRSLSGTATERNIDFELDIRVEIDSGKCVLHPTTLLQEHDDISLRRSYDRSSRSLDQDSPSKKKKFQTNYASTTHLMTGKKVPSSLQTKPSDLETTVFYIPGVDVKLHY------NSKTLKTESPNAS-RGSSLPRTLSKESKLYGMKDSATSPPSPPLPSTVQSKTNTLLPPQPPPIPAAKGKGSGGVKTAKLYAWVALQSLPEEMVISPCLLDFLEKALETIPITPVERNYTAVSSQDEDMGHFEIPDPMEESTTSLVSSSTSAYSSFPVDVVVYVRVQPSQIKFSCLPVSRVECMLKLPSLDLVFSSNRGELETLGTTYPAETLSPGGNATQSGTKTSASKTGIPG-SSGLGSPLGRSRHSSSQSDLTSSSSSSSGLSFTACMSDFSLYVFHPYGAGKQKTAVSGLTPGSGGLGNVDEEPTS-----VTGRKDSLSINLEFVKVSLSRIRRSGGASFFESQSVSKSASKMDTTLINISAVCDIGSASFKYDMRRLSEILAFPRAWYRRSIARRLFLGDQ 4285 The following BLAST results are available for this feature:
BLAST of TCONS_00025304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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