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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025285 ID=TCONS_00025285|Name=TCONS_00025285|organism=Clytia hemisphaerica|type=transcript|length=1577bp
gtctaatgttaGCATTTATTGTCATTAGGgtaacaatttaaaaaaacaac
atgagTGCCGTTATTGGCTACGTACGTGGAatcatcaatatttttttcat
gtttttctctGCTTTCTTTGGCTTGGTTTTTATCATGTTTCCAAGCTTGA
TATTGTTGGCTTTTAAGAAGTATGACTGGTTTCGAATGTGGAATGATTAC
TGGGGAGGCTTTTGGCTAACCTTCCCTGGTAATTGGTGCATGGAGTGAAG
TTTGTGATGAAAGGAGATAAATTGGATGAAAGAGACAATGTGCTTATTAT
ATTGAATCACAGATGTCGTGTTGACTGGATGTTTTATTGGATGGCAGTTC
TGCGCACTGGACGTTTGCACAACGAGAAAATTATCATGAAGAATGAGTTG
AAACATATCCCTGGACCAGGCTGGTGTATGCAGTATTTGCTGTACTGCTT
CTTACAGCGTAAATGGGAGACCGACCGTGGCTACCTAGAGAGATACGTCA
ATTACTTCATTGATGCCAAATACCCCTTACAATTCTTTCTTTTCCCTGAG
GGAACTGATTTCGACAAAAATGGAAAAGCAAGCAGTGATCGATTCGCTGA
TAAAATGGGTCTCCCCAAATATGATTACGTCATGCACCCTCGTACCACTG
GATTCAATTATTTGGTACAAAAAACACGTGGCAAAGTCATCAATACTGTT
TATGACGTAACTTTAGGATATCCAGTCAATCTTTGTTATGGTGAGATGGA
CTTAGCAAGAGGTAACTTTCCAAAAGAGATCCATTGTTTTTTCAAGAGGT
ATCAAGTAGACGAGCTGCCAACCGAGGATGGTGCATTAGGTGATTGGTGT
AAGGAGAGGTTTGCTGAAAAGGAGGAACGGTTGAAGGAGTTTTATAAACA
AAAGAGGTTCACAGGTCCTGGTACAGAACAGGATGTCACCACAAGGAAAC
AAGAAGATCATGCTAATATCACCAATTATATCAGTTTGATATTCTGGGTG
TCGTTTGTGTTGTATTCCATCCAAGCAGTTTGGTGTTCATCTTTCTTGTT
CTGGTACACCATCATCGTTTCCATCATCCATGCTGTTATTTCTGCTGTAG
GAGGTATGGATAAAACTTTCTTAGATTTGCACGAGAAAGAAAAATCCAAA
CAAAGATGATAGGCTTTTAGAGCTTTAATTTTGTTAATGtgtactttttt
ttaatttcatgcATTTGTTGTAAAGGTAAGcgtcattttttatttcgtta
atttaaaattttttcattttatatagtcacacaaagaagatttttttttt
aatttgattataTACGGacgatttaaagatttttgtggaACATTTTTTGA
TTCGATTTGGAAGTAAGATTATATATTATCACATTATTTATTTGATATAT
GCATAAAGGAAATCAAAATGTTGAGTCCTACAATCTGTATATAGATAGGA
AAAGTTTTTGTCTACATTAGTctagttttcattttttaattttttgttga
ttttatcaCATTTTCATTTGCTTATGAGGGgtctttaagttttttttatt
gtttcatttataaaatgaTACAGATCG Run BLAST on NCBI transcript from alignment at sc0000529:218405..222378- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025285 ID=TCONS_00025285|Name=TCONS_00025285|organism=Clytia hemisphaerica|type=transcript|length=3974bp|location=Sequence derived from alignment at sc0000529:218405..222378- (Clytia hemisphaerica)
GTCTAATGTTAGCATTTATTGTCATTAGGGTAACAATTTAAAAAAACAAC
ATGAGTGCCGTTATTGGCTACGTACGTGGAATCATCAATATTTTTTTCAT
GTTTTTCTCTGCTTTCTTTGGCTTGGTTTTTATCATGTTTCCAAGCTTGA
TATTGTTGGCTTTTAAGAAGTATGACTGGTTTCGAATGTGGAATGATTAC
TGGGGAGGCTTTTGGCTAACCTTCCCTGGTGTGAGTATATTGACTTATTT
TTTCTATGTACTGAATTGTATGTCTTTATAAGGGATTTACATAAGACATT
GTGACAAAAAAAGATTTACTTCTCTATATATAATTGACATTACATCATTA
TGATTACCTGTGGAATTTCTTGACCCCTTTAAAATACTCTTTGTGACATG
AAGCTTCGTTTGAATATCAATCTTGCTAGTGTTTTACGGTGATTTTTATT
GTTTTCTTTATGATTAAATAAAGTTGAATGATATTTAATTTTTAGTGAAA
TCTGGTAAAAGTATCTAAACAAGAATTTTTTTCTTTTTAGGCACTCTTTG
GTAAGTATCATCGACTGAGTGAAAGATTCCATCATTTGTTATGTTTTCCT
CTGTTTAAGATATGTTTTTTTCCAGTTTTTTAAGGCTACTTAAATTAAAT
TAAAGCTAAACGTTGTGGTATTTATAAGCACATTGGTATTTATAAATTTG
ACCAAATCAAACGCTATTCGATTAGACCAAATTCTTAGTGTTGGTATCTG
ATGGCCTTTGGCCTGGTAATTTTAGAATTGGTGCATGGAGTGAAGTTTGT
GATGAAAGGAGATAAATTGGATGAAAGAGACAATGTGCTTATTATATTGA
ATCACAGATGTCGTGTTGACTGGATGTTTTATTGGATGGCAGTTCTGCGC
ACTGGACGTTTGCACAACGAGAAAATTATCATGAAGAATGAGTTGAAACA
TATCCCTGGACCAGGTTTCACTTTTACTTAATGTGTTTAAATTTTGCAAG
AGTAGTAAACATTATAAACATATAGCAGTGATTTGTAGATTTTTTTGTAT
TCCGTTTTCTTTTCTATTTTTATTTCTATTTAATTTTCGCTAAAATCACT
AATAGATCTTTTTAAAGAGTTGAGCAACAGGGGGGGGGCACATGATGTGT
AGTAAGTGCCTTTTCAGCACTTTTTTTAGGACCACCACCCATTGCAATTA
CTACACCAGGGTAGTAACTTTATTTCTGGGAAAAAAATTCAGGTACCACC
CCCATTTTGGGTGCAAATATCAAGTACACCACTTCTATGCAACTTTGTGA
CATTTTGAAGAAACATTTGTATATATGCTGTGGAAAGTAACCCATACATG
AGGAAAACTCCCAAGTTGACTGTAGTTATTTTTAAAAGTTTTAAGAGGCC
TTGTTGAAATATTTAGCAAAAGTGATTTTTAAATAATACTTTTCATCTCT
TCATCAAAATATGAATTAATCTGAATTAATCATAAACTAAAGTCTGTCTC
AAAATAATTTGCAGCTGATACAAAAATGGCTGTAACTTTTGACAGAATTC
GAATTAGATAGCGGTTTTGTGCTTGTGCTTGTTGAAAAGATAATCCAGAG
TGGAATATCATCAAAAAAGAAAAAAATATTTAAAAATGGAAAAACGAAGA
AAATCAACTTTTTGTAGAATAATGGTATCTTTTTTTTTTCATATCAGAAT
TTCTTCAATCTTAGAACGTCAAAAATGCGAGAAAAAAATCAAAAAATATT
CATTCAGTCAAAAAATACAGCTTAAAACTTTGCCCTGATTGACTTAAAAA
AGGCTTTTTGAAGTCAATCAGTGATAAACTTTGAACTATATCTTTCGATG
CAATAAATTTCTTTGTTGAAGAAGTTGATTTTCTTCTTCATTTTGAATCT
TCATTTTTCGATCCTATTTGTCTTTTCAACAAGCACAAAACCGCTAACTA
ATTCGAATTTTATCAAAAGTTATAGCATTTTTTTGTCTCCTCTACAAATT
ATTTTGAGACAGACTTTACACAATGAAACCTAATAAAACATCTATTTAAA
CTTCTTAAAAAAACAAAGAAATTTTGTAACAAGCTTGCACCCATTAGTTC
TTAATTGCCCATTGAAATGTGCCAAGAGTCTTGATATTTTCCATAATAGA
AGGTTATCAGTTGTGGAATTAAAATTGAAATCAATCAAAATTCCCCAAAT
GAACCACAAGGGATTATGTGGCAGAAAACATATACATGCTTGCTAGCAGT
CCTATTGGCATTAGTCCTTGTGATTTTCAGACTTCCAAAACTTCAAATGA
CTGAAAATGGGTGAACCTTAAGCCACCCAGGTGGTGGGTGCACCAGAGAG
CTCTGACAAGTGGTTTATAATTGATTAAACCATCTCAAATATGATTTAAT
TAAATGTCTTCTCGAAAAAGTTTAAGAGCAAAACTCAATCTTTAATGTCG
AGTGGATTTGGCTTCTGTTTTATCACCCAAACTCTCCGAATCCAATAAAA
ACAACATTTGCCCTGGTAAATTGGGGAAAGACACCACCCTAAACAGCAAT
TACTACACTGTGTAGTAACTGCTTTCAAAATTTTTGAAAACAGTACAACC
ACGGTAGTAAGTGTCATACTGTCTTAAAATAACTGCGTGCCCCCCTGGCG
ACAAATTAGTTTTCGATTTTGACATGCAGAATGATTTGTTTGTGGTCTTT
TCGAAGGCTGGAGAAATTGTTCAGCTATGGAGCTCCTTTGAAAACTTTTC
AATTTATCAAATTTCTCTTGAATCGTGTAAACCCATGATCTAAAACTTTC
TCTTTATGTTTTTCAGGCTGGTGTATGCAGTATTTGCTGTACTGCTTCTT
ACAGCGTAAATGGGAGACCGACCGTGGCTACCTAGAGAGATACGTCAATT
ACTTCATTGATGCCAAATACCCCTTACAATTCTTTCTTTTCCCTGAGGGA
ACTGATTTCGACAAAAATGGAAAAGCAAGCAGTGATCGATTCGCTGATAA
AATGGGTCTCCCCAAATATGATTACGTCATGCACCCTCGTACCACTGGAT
TCAATTATTTGGTACAAAAAACACGTGGCAAAGTCATCAATACTGTTTAT
GACGTAACTTTAGGATATCCAGTCAATCTTTGTTATGGTGAGATGGACTT
AGCAAGAGGTAACTTTCCAAAAGAGATCCATTGTTTTTTCAAGAGGTATC
AAGTAGACGAGCTGCCAACCGAGGATGGTGCATTAGGTGATTGGTGTAAG
GAGAGGTTTGCTGAAAAGGAGGAACGGTTGAAGGAGTTTTATAAACAAAA
GAGGTTCACAGGTCCTGGTACAGAACAGGATGTCACCACAAGGAAACAAG
AAGATCATGCTAATATCACCAATTATATCAGTTTGATATTCTGGGTGTCG
TTTGTGTTGTATTCCATCCAAGCAGTTTGGTGTTCATCTTTCTTGTTCTG
GTACACCATCATCGTTTCCATCATCCATGCTGTTATTTCTGCTGTAGGAG
GTATGGATAAAACTTTCTTAGATTTGCACGAGAAAGAAAAATCCAAACAA
AGATGATAGGCTTTTAGAGCTTTAATTTTGTTAATGTGTACTTTTTTTTA
ATTTCATGCATTTGTTGTAAAGGTAAGCGTCATTTTTTATTTCGTTAATT
TAAAATTTTTTCATTTTATATAGTCACACAAAGAAGATTTTTTTTTTAAT
TTGATTATATACGGACGATTTAAAGATTTTTGTGGAACATTTTTTGATTC
GATTTGGAAGTAAGATTATATATTATCACATTATTTATTTGATATATGCA
TAAAGGAAATCAAAATGTTGAGTCCTACAATCTGTATATAGATAGGAAAA
GTTTTTGTCTACATTAGTCTAGTTTTCATTTTTTAATTTTTTGTTGATTT
TATCACATTTTCATTTGCTTATGAGGGGTCTTTAAGTTTTTTTTATTGTT
TCATTTATAAAATGATACAGATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025285-exon-sc0000529-1575043694:222149..222378 | TCONS_00025285-exon-sc0000529-1575043694:222149..222378 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1575043694:221415..221603 | TCONS_00025285-exon-sc0000529-1575043694:221415..221603 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1575043694:218405..219562 | TCONS_00025285-exon-sc0000529-1575043694:218405..219562 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1510915933:222149..222378 | TCONS_00025285-exon-sc0000529-1510915933:222149..222378 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1510915933:221415..221603 | TCONS_00025285-exon-sc0000529-1510915933:221415..221603 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1510915933:218405..219562 | TCONS_00025285-exon-sc0000529-1510915933:218405..219562 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1491911889:222149..222378 | TCONS_00025285-exon-sc0000529-1491911889:222149..222378 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1491911889:221415..221603 | TCONS_00025285-exon-sc0000529-1491911889:221415..221603 | Clytia hemisphaerica | exon |
| TCONS_00025285-exon-sc0000529-1491911889:218405..219562 | TCONS_00025285-exon-sc0000529-1491911889:218405..219562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000529 | supercontig | sc0000529:218405..222378 - |
Blast
BLAST of TCONS_00025285 vs. Swiss-Prot (Human)
Match: LCLT1 (Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 2.649e-70 Identity = 115/276 (41.67%), Postives = 167/276 (60.51%), Query Frame = 2
Query: 242 GVKFVMKGDKLDERDNVLIILNHRCRVDWMFYWMAVLRTGRLHNEKIIMKNELKHIPGPGWCMQYLLYCFLQRKWETDRGYLERYVNYFIDAKYPLQFFLFPEGTDFDKNGKASSDRFADKMGLPKYDYVMHPRTTGFNYLVQKTR-GKVINTVYDVTLGYPVNLCYGEMDLARGNFPKEIHCFFKRYQVDELPTEDGALGDWCKERFAEKEERLKEFYKQKR---FTGPGTEQDVTTRKQEDHANITNYISLIFWVSFVLYSIQAVWCSSFLFWY 1057
GVK ++ GD + +II+NHR R+DWMF W ++R L EKI +K LK +PG GW MQ Y F+ RKW+ D+ + E ++YF D PLQ +FPEGTD +N K+ S+ FA+K GL KY+YV+HPRTTGF ++V + R GK ++ V+D+T+ YP N+ E L +G+FP+EIH RY +D LPT L WC +R+ EKEERL+ FY+ ++ FTG + + K E + +S+++W F ++ S + WY
Sbjct: 101 GVKVIITGDAFVPGERSVIIMNHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAYIFIHRKWKDDKSHFEDMIDYFCDIHEPLQLLIFPEGTDLTENSKSRSNAFAEKNGLQKYEYVLHPRTTGFTFVVDRLREGKNLDAVHDITVAYPHNIPQSEKHLLQGDFPREIHFHVHRYPIDTLPTSKEDLQLWCHKRWEEKEERLRSFYQGEKNFYFTG---QSVIPPCKSELRVLVVKLLSILYWTLFSPAMCLLIYLYSLVKWY 373
The following BLAST results are available for this feature:
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