TCONS_00025284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025284
Unique NameTCONS_00025284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025284 ID=TCONS_00025284|Name=TCONS_00025284|organism=Clytia hemisphaerica|type=transcript|length=1790bp
CATTAGGgtaacaatttaaaaaaacaacatgagTGCCGTTATTGGCTACG
TACGTGGAatcatcaatatttttttcatgtttttctctGCTTTCTTTGGC
TTGGTTTTTATCATGTTTCCAAGCTTGATATTGTTGGCTTTTAAGAAGTA
TGACTGGTTTCGAATGTGGAATGATTACTGGGGAGGCTTTTGGCTAACCT
TCCCTGGTgcaCTCTTTGGTAAGTATCATCGACTGAGTGAAAGATTCCAT
CATTTGTTATGTTTTCCTCTGTTTAAGATATgtttttttccagtttttta
AGGCTacttaaattaaattaaagctAAACGTTGTggtatttataagcaca
ttggTATTTATAAATTTGACCAAATCAAACGCTATTCGATTAGACCAAAT
TCTTAGTGTTGGTATCTGATGGCCTTTGGCCTGGTAATTTTAGAATTGGT
GCATGGAGTGAAGTTTGTGATGAAAGGAGATAAATTGGATGAAAGAGACA
ATGTGCTTATTATATTGAATCACAGATGTCGTGTTGACTGGATGTTTTAT
TGGATGGCAGTTCTGCGCACTGGACGTTTGCACAACGAGAAAATTATCAT
GAAGAATGAGTTGAAACATATCCCTGGACCAGGCTGGTGTATGCAGTATT
TGCTGTACTGCTTCTTACAGCGTAAATGGGAGACCGACCGTGGCTACCTA
GAGAGATACGTCAATTACTTCATTGATGCCAAATACCCCTTACAATTCTT
TCTTTTCCCTGAGGGAACTGATTTCGACAAAAATGGAAAAGCAAGCAGTG
ATCGATTCGCTGATAAAATGGGTCTCCCCAAATATGATTACGTCATGCAC
CCTCGTACCACTGGATTCAATTATTTGGTACAAAAAACACGTGGCAAAGT
CATCAATACTGTTTATGACGTAACTTTAGGATATCCAGTCAATCTTTGTT
ATGGTGAGATGGACTTAGCAAGAGGTAACTTTCCAAAAGAGATCCATTGT
TTTTTCAAGAGGTATCAAGTAGACGAGCTGCCAACCGAGGATGGTGCATT
AGGTGATTGGTGTAAGGAGAGGTTTGCTGAAAAGGAGGAACGGTTGAAGG
AGTTTTATAAACAAAAGAGGTTCACAGGTCCTGGTACAGAACAGGATGTC
ACCACAAGGAAACAAGAAGATCATGCTAATATCACCAATTATATCAGTTT
GATATTCTGGGTGTCGTTTGTGTTGTATTCCATCCAAGCAGTTTGGTGTT
CATCTTTCTTGTTCTGGTACACCATCATCGTTTCCATCATCCATGCTGTT
ATTTCTGCTGTAGGAGGTATGGATAAAACTTTCTTAGATTTGCACGAGAA
AGAAAAATCCAAACAAAGATGATAGGCTTTTAGAGCTTTAATTTTGTTAA
TGtgtacttttttttaatttcatgcATTTGTTGTAAAGGTAAGcgtcatt
ttttatttcgttaatttaaaattttttcattttatatagtcacacaaaga
agattttttttttaatttgattataTACGGacgatttaaagatttttgtg
gaACATTTTTTGATTCGATTTGGAAGTAAGATTATATATTATCACATTAT
TTATTTGATATATGCATAAAGGAAATCAAAATGTTGAGTCCTACAATCTG
TATATAGATAGGAAAAGTTTTTGTCTACATTAGTctagttttcatttttt
aattttttgttgattttatcaCATTTTCATTTGCTTATGAGGGgtcttta
agttttttttattgtttcatttataaaatgaTACAGATCG
Run BLAST on NCBI

transcript from alignment at sc0000529:218405..222356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025284 ID=TCONS_00025284|Name=TCONS_00025284|organism=Clytia hemisphaerica|type=transcript|length=3952bp|location=Sequence derived from alignment at sc0000529:218405..222356- (Clytia hemisphaerica)
CATTAGGGTAACAATTTAAAAAAACAACATGAGTGCCGTTATTGGCTACG
TACGTGGAATCATCAATATTTTTTTCATGTTTTTCTCTGCTTTCTTTGGC
TTGGTTTTTATCATGTTTCCAAGCTTGATATTGTTGGCTTTTAAGAAGTA
TGACTGGTTTCGAATGTGGAATGATTACTGGGGAGGCTTTTGGCTAACCT
TCCCTGGTGTGAGTATATTGACTTATTTTTTCTATGTACTGAATTGTATG
TCTTTATAAGGGATTTACATAAGACATTGTGACAAAAAAAGATTTACTTC
TCTATATATAATTGACATTACATCATTATGATTACCTGTGGAATTTCTTG
ACCCCTTTAAAATACTCTTTGTGACATGAAGCTTCGTTTGAATATCAATC
TTGCTAGTGTTTTACGGTGATTTTTATTGTTTTCTTTATGATTAAATAAA
GTTGAATGATATTTAATTTTTAGTGAAATCTGGTAAAAGTATCTAAACAA
GAATTTTTTTCTTTTTAGGCACTCTTTGGTAAGTATCATCGACTGAGTGA
AAGATTCCATCATTTGTTATGTTTTCCTCTGTTTAAGATATGTTTTTTTC
CAGTTTTTTAAGGCTACTTAAATTAAATTAAAGCTAAACGTTGTGGTATT
TATAAGCACATTGGTATTTATAAATTTGACCAAATCAAACGCTATTCGAT
TAGACCAAATTCTTAGTGTTGGTATCTGATGGCCTTTGGCCTGGTAATTT
TAGAATTGGTGCATGGAGTGAAGTTTGTGATGAAAGGAGATAAATTGGAT
GAAAGAGACAATGTGCTTATTATATTGAATCACAGATGTCGTGTTGACTG
GATGTTTTATTGGATGGCAGTTCTGCGCACTGGACGTTTGCACAACGAGA
AAATTATCATGAAGAATGAGTTGAAACATATCCCTGGACCAGGTTTCACT
TTTACTTAATGTGTTTAAATTTTGCAAGAGTAGTAAACATTATAAACATA
TAGCAGTGATTTGTAGATTTTTTTGTATTCCGTTTTCTTTTCTATTTTTA
TTTCTATTTAATTTTCGCTAAAATCACTAATAGATCTTTTTAAAGAGTTG
AGCAACAGGGGGGGGGCACATGATGTGTAGTAAGTGCCTTTTCAGCACTT
TTTTTAGGACCACCACCCATTGCAATTACTACACCAGGGTAGTAACTTTA
TTTCTGGGAAAAAAATTCAGGTACCACCCCCATTTTGGGTGCAAATATCA
AGTACACCACTTCTATGCAACTTTGTGACATTTTGAAGAAACATTTGTAT
ATATGCTGTGGAAAGTAACCCATACATGAGGAAAACTCCCAAGTTGACTG
TAGTTATTTTTAAAAGTTTTAAGAGGCCTTGTTGAAATATTTAGCAAAAG
TGATTTTTAAATAATACTTTTCATCTCTTCATCAAAATATGAATTAATCT
GAATTAATCATAAACTAAAGTCTGTCTCAAAATAATTTGCAGCTGATACA
AAAATGGCTGTAACTTTTGACAGAATTCGAATTAGATAGCGGTTTTGTGC
TTGTGCTTGTTGAAAAGATAATCCAGAGTGGAATATCATCAAAAAAGAAA
AAAATATTTAAAAATGGAAAAACGAAGAAAATCAACTTTTTGTAGAATAA
TGGTATCTTTTTTTTTTCATATCAGAATTTCTTCAATCTTAGAACGTCAA
AAATGCGAGAAAAAAATCAAAAAATATTCATTCAGTCAAAAAATACAGCT
TAAAACTTTGCCCTGATTGACTTAAAAAAGGCTTTTTGAAGTCAATCAGT
GATAAACTTTGAACTATATCTTTCGATGCAATAAATTTCTTTGTTGAAGA
AGTTGATTTTCTTCTTCATTTTGAATCTTCATTTTTCGATCCTATTTGTC
TTTTCAACAAGCACAAAACCGCTAACTAATTCGAATTTTATCAAAAGTTA
TAGCATTTTTTTGTCTCCTCTACAAATTATTTTGAGACAGACTTTACACA
ATGAAACCTAATAAAACATCTATTTAAACTTCTTAAAAAAACAAAGAAAT
TTTGTAACAAGCTTGCACCCATTAGTTCTTAATTGCCCATTGAAATGTGC
CAAGAGTCTTGATATTTTCCATAATAGAAGGTTATCAGTTGTGGAATTAA
AATTGAAATCAATCAAAATTCCCCAAATGAACCACAAGGGATTATGTGGC
AGAAAACATATACATGCTTGCTAGCAGTCCTATTGGCATTAGTCCTTGTG
ATTTTCAGACTTCCAAAACTTCAAATGACTGAAAATGGGTGAACCTTAAG
CCACCCAGGTGGTGGGTGCACCAGAGAGCTCTGACAAGTGGTTTATAATT
GATTAAACCATCTCAAATATGATTTAATTAAATGTCTTCTCGAAAAAGTT
TAAGAGCAAAACTCAATCTTTAATGTCGAGTGGATTTGGCTTCTGTTTTA
TCACCCAAACTCTCCGAATCCAATAAAAACAACATTTGCCCTGGTAAATT
GGGGAAAGACACCACCCTAAACAGCAATTACTACACTGTGTAGTAACTGC
TTTCAAAATTTTTGAAAACAGTACAACCACGGTAGTAAGTGTCATACTGT
CTTAAAATAACTGCGTGCCCCCCTGGCGACAAATTAGTTTTCGATTTTGA
CATGCAGAATGATTTGTTTGTGGTCTTTTCGAAGGCTGGAGAAATTGTTC
AGCTATGGAGCTCCTTTGAAAACTTTTCAATTTATCAAATTTCTCTTGAA
TCGTGTAAACCCATGATCTAAAACTTTCTCTTTATGTTTTTCAGGCTGGT
GTATGCAGTATTTGCTGTACTGCTTCTTACAGCGTAAATGGGAGACCGAC
CGTGGCTACCTAGAGAGATACGTCAATTACTTCATTGATGCCAAATACCC
CTTACAATTCTTTCTTTTCCCTGAGGGAACTGATTTCGACAAAAATGGAA
AAGCAAGCAGTGATCGATTCGCTGATAAAATGGGTCTCCCCAAATATGAT
TACGTCATGCACCCTCGTACCACTGGATTCAATTATTTGGTACAAAAAAC
ACGTGGCAAAGTCATCAATACTGTTTATGACGTAACTTTAGGATATCCAG
TCAATCTTTGTTATGGTGAGATGGACTTAGCAAGAGGTAACTTTCCAAAA
GAGATCCATTGTTTTTTCAAGAGGTATCAAGTAGACGAGCTGCCAACCGA
GGATGGTGCATTAGGTGATTGGTGTAAGGAGAGGTTTGCTGAAAAGGAGG
AACGGTTGAAGGAGTTTTATAAACAAAAGAGGTTCACAGGTCCTGGTACA
GAACAGGATGTCACCACAAGGAAACAAGAAGATCATGCTAATATCACCAA
TTATATCAGTTTGATATTCTGGGTGTCGTTTGTGTTGTATTCCATCCAAG
CAGTTTGGTGTTCATCTTTCTTGTTCTGGTACACCATCATCGTTTCCATC
ATCCATGCTGTTATTTCTGCTGTAGGAGGTATGGATAAAACTTTCTTAGA
TTTGCACGAGAAAGAAAAATCCAAACAAAGATGATAGGCTTTTAGAGCTT
TAATTTTGTTAATGTGTACTTTTTTTTAATTTCATGCATTTGTTGTAAAG
GTAAGCGTCATTTTTTATTTCGTTAATTTAAAATTTTTTCATTTTATATA
GTCACACAAAGAAGATTTTTTTTTTAATTTGATTATATACGGACGATTTA
AAGATTTTTGTGGAACATTTTTTGATTCGATTTGGAAGTAAGATTATATA
TTATCACATTATTTATTTGATATATGCATAAAGGAAATCAAAATGTTGAG
TCCTACAATCTGTATATAGATAGGAAAAGTTTTTGTCTACATTAGTCTAG
TTTTCATTTTTTAATTTTTTGTTGATTTTATCACATTTTCATTTGCTTAT
GAGGGGTCTTTAAGTTTTTTTTATTGTTTCATTTATAAAATGATACAGAT
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014196XLOC_014196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025284-exon-sc0000529-1575043694:222149..222356TCONS_00025284-exon-sc0000529-1575043694:222149..222356Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1575043694:221415..221838TCONS_00025284-exon-sc0000529-1575043694:221415..221838Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1575043694:218405..219562TCONS_00025284-exon-sc0000529-1575043694:218405..219562Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1510915933:222149..222356TCONS_00025284-exon-sc0000529-1510915933:222149..222356Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1510915933:221415..221838TCONS_00025284-exon-sc0000529-1510915933:221415..221838Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1510915933:218405..219562TCONS_00025284-exon-sc0000529-1510915933:218405..219562Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1491911889:222149..222356TCONS_00025284-exon-sc0000529-1491911889:222149..222356Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1491911889:221415..221838TCONS_00025284-exon-sc0000529-1491911889:221415..221838Clytia hemisphaericaexon
TCONS_00025284-exon-sc0000529-1491911889:218405..219562TCONS_00025284-exon-sc0000529-1491911889:218405..219562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:218405..222356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.7511	17.0779	5.84151	8.16159	8.19337	6.71365	7.25045	7.67506	9.25211	10.1771	7.48096	6.16996	7.35104	4.80969	5.19263	7.00763	5.25773	5.89282	3.01001	4.05862	2.97171	1.77877	10.6304	7.29087	3.86937	3.12583	1.50725	0.974975	3.06866	5.45092
Blast
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BLAST of TCONS_00025284 vs. Swiss-Prot (Human)
Match: LCLT1 (Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.906e-71
Identity = 117/288 (40.62%), Postives = 173/288 (60.07%), Query Frame = 2 
Query:  419 MAFGLVILELVHGVKFVMKGDKLDERDNVLIILNHRCRVDWMFYWMAVLRTGRLHNEKIIMKNELKHIPGPGWCMQYLLYCFLQRKWETDRGYLERYVNYFIDAKYPLQFFLFPEGTDFDKNGKASSDRFADKMGLPKYDYVMHPRTTGFNYLVQKTR-GKVINTVYDVTLGYPVNLCYGEMDLARGNFPKEIHCFFKRYQVDELPTEDGALGDWCKERFAEKEERLKEFYKQKR---FTGPGTEQDVTTRKQEDHANITNYISLIFWVSFVLYSIQAVWCSSFLFWY 1270
            +   + +LE + GVK ++ GD     +  +II+NHR R+DWMF W  ++R   L  EKI +K  LK +PG GW MQ   Y F+ RKW+ D+ + E  ++YF D   PLQ  +FPEGTD  +N K+ S+ FA+K GL KY+YV+HPRTTGF ++V + R GK ++ V+D+T+ YP N+   E  L +G+FP+EIH    RY +D LPT    L  WC +R+ EKEERL+ FY+ ++   FTG   +  +   K E    +   +S+++W  F       ++  S + WY
Sbjct:   89 LTLPVALLETMFGVKVIITGDAFVPGERSVIIMNHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAYIFIHRKWKDDKSHFEDMIDYFCDIHEPLQLLIFPEGTDLTENSKSRSNAFAEKNGLQKYEYVLHPRTTGFTFVVDRLREGKNLDAVHDITVAYPHNIPQSEKHLLQGDFPREIHFHVHRYPIDTLPTSKEDLQLWCHKRWEEKEERLRSFYQGEKNFYFTG---QSVIPPCKSELRVLVVKLLSILYWTLFSPAMCLLIYLYSLVKWY 373
The following BLAST results are available for this feature:
BLAST of TCONS_00025284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LCLT13.906e-7140.63Lysocardiolipin acyltransferase 1 OS=Homo sapiens ... [more]
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