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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025262 ID=TCONS_00025262|Name=TCONS_00025262|organism=Clytia hemisphaerica|type=transcript|length=1529bp
AAGAGATATAAATAATCTTGCAAAAAAGTACAATACTTCAATCACAAACA
TAGTTTACAAGTTTGAGCAGAACCCTCTGGTTTTTTTCTGCTTGGTAGAG
ACTTTTTTTGGAGGGAAGTTTTATCGAGATTAGCTAATTGTACCTATGCT
TTGATAAACATGAGTGACTTTGAGAAGCAGCCTTTGATCACCTCAAGTAA
TGAACAACATACTTACTCAAACGTTATTAAGAATGAAGAAATAATTGAAA
AAGCTACATTACCGGGTGGACTAACCGTGTTTAAATGTGCGGTCTTCATA
TTCTCAAGCATCACTGGTAGCGGCGTACTAGCGTTACCGTATGCTTTATC
GAACGCTGGGTGGTCTGGAATTATTCTCTTAATGTTCGTATGCGTGTTGT
CCGGTTATTGTGGAGTTATTTGCGGAAAATGTTGGATGATCGTCCGGGAA
AAGAAGCCAAACGTTGACTATACCCGTGACCCTTTTCCAGCTATCGGACA
TGCAGCCGCTGGAAATGTGGGATATATTTTCACGGAGATTTCAGTATTGC
TGTCCCTTATGGGAGTATCTGTTGTGTTTTTGATCCTTGGTTCTCAGCAG
TTTGTATCCATCATTGGGAAATCGTTTGACGGAGTAAGCAAGATTGATGA
GTTACGTGCTGCTATTTTCATATGCGGTGTCGTTTTAATCCCTTTCCAAT
GGTTAGGAACCTCTAAAGACATCGCCTCGTTTATCGTTGGAGCAAGCGTT
TGTACAGCAATCGCAAGTTTTATTATCGTTTATGAATCCATTGCAATACT
TGCGAAGAACGGGTTTCCACAGACACGACGTGACGTCACAGGCGAGTCCT
TCTTCATGGCTTTTGGAACAATCGCTTTTACTTTTGGAGGAGGGACTCTC
TTCCCTTCCTTTCAAGCAGACATGCAAAAGCCTTCCAAATTCCCTCTAGC
TCTGGTGCTCGGCTTCGTTGGAGTCCTCTTTATTTATTTGCCGGCAGCTT
TGCTACCATTTTTAGTGATAGAAGAACCGAATGTGGATATCATGATATCA
TTGAAAAGCAATATGGCGGTTGACCATAAGTATGTGCTCACCATCGCACA
GTGTTTGATCTCCATCCATATTCTGTCCACCATCGTGTTGGTCAATAATC
CAATATCGCTCCAAATTGAAGAACATCTGAAGATTCCCCATGCTAGCGGT
TGGAAACGTATTCTCGTTCGAACGTTTGTTGGTCTCCTGTTGACTGGTAT
TGGTATTCTGTTTCCGCACCTCGGTCCAGTCATCACCATTGTGGGTGCAT
TTACCGTCTCTGTCGTCTCGTTCATTCTTCCTGTGTGGTTTTACATGAAA
TTGAACAATTACGTCATCCCACTGCATGTCAAAGTGCTACATATTGAAAT
CATTCTTGTGGCTGCTGTATTTGGCGCACTGGGTATTTATTCTGGCATCG
TTGAAATGATCAAGCAATATCATTTATAGTCTGATCTAACTAAGGACTAC
TCTTGTCTTCCAAATAGACGGtagggggg Run BLAST on NCBI transcript from alignment at sc0000529:35121..37309- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025262 ID=TCONS_00025262|Name=TCONS_00025262|organism=Clytia hemisphaerica|type=transcript|length=2189bp|location=Sequence derived from alignment at sc0000529:35121..37309- (Clytia hemisphaerica)
AAGAGATATAAATAATCTTGCAAAAAAGTACAATACTTCAATCACAAACA
TAGTTTACAAGTTTGAGCAGAACCCTCTGGTTTTTTTCTGCTTGGTAGAG
ACTTTTTTTGGAGGGAAGTTTTATCGAGATTAGCTAATTGTACCTATGCT
TTGATAAACATGAGTGACTTTGAGAAGCAGCCTTTGATCACCTCAAGTAA
TGAACAACATACTTACTCAAACGTTATTAAGAATGAAGAAATAATTGAAA
AAGCTACATTACCGGGTGGACTAACCGTGTTTAAATGTGCGGTCTTCATA
TTCTCAAGCATCACTGGTAGCGGCGTACTAGCGTTACCGTATGCTTTATC
GAACGCTGGGTGGTCTGGAATTATTCTCTTAATGTTCGTATGCGTGTTGT
CCGGTTATTGTGGAGTTATTTGCGGAAAATGTTGGATGATCGTCCGGGAA
AAGAAGCCAAACGTTGACTATACCCGTGACCCTTTTCCAGCTATCGGACA
TGCAGCCGCTGGAAATGTGGGATATATTTTCACGGAGATTTCAGTATTGC
TGTCCCTTATGGGAGTATCTGTTGTGTTTTTGATCCTTGGTTCTCAGCAG
TTTGTATCCATCATTGGGAAATCGTTTGACGGAGTAAGCAAGATTGATGA
GTTACGTGCTGCTATTTTCATATGCGGTGTCGTTTTAATCCCTTTCCAAT
GGTTAGGAACCTCTAAAGACATCGCCTCGTTTATCGTTGGAGCAAGCGTT
TGTACAGCAATCGCAAGTTTTATTATCGTTTATGAATCCATTGCAATACT
TGCGAAGAACGGGTTTCCACAGACACGACGTGACGTCACAGGCGAGTCCT
TCTTCATGGCTTTTGGAACAATCGCTTTTACTTTTGGAGGAGGGACTCTC
TTCCCTTCCTTTCAAGCAGACATGCAAAAGCCTTCCAAATTCCCTCTAGC
TCTGGTGCTCGGCTTCGTTGGAGTCCTCTTTATTTATTTGCCGGCAGCTT
TGCTACCATTTTTAGTGATAGAAGAACCGAATGTGGATATCATGATATCA
TTGAAAAGCAATATGGCGGTTGACCATAAGTATGTGCTCACCATCGCACA
GTGTTTGATCTCCATCCATATTCTGTCCACCATCGTGTTGGTCAATAATC
CAATATCGCTCCAAATTGAAGAACATCTGAAGATTCCCCATGGTAAGAAT
GCAGTGTTGAAATCTTGCAGTTTGTAGGCGGACTTCCTTCTTACAGAGAT
AACATTGAGATCAGTCAAAAAGACAGTTATCAGCTGTAAGTTGTAAAGCA
AGTAACATGGGAATGAAATCACGTGAACTTTTTCGAGTAATCACATGTTT
TGACTGCACTGATATACAGGGTGTCCCTAATTAAAGTATCGAGTCGAAAC
ACAACTATGAGTAGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTA
AGCTCTCCCTCTTTTTTCTTTGTCACTACGATTAATTTATACGTTGTAAC
TACCTTTTGTAATAAGCCTGTGTGATGGAGAACGTACATTTGCAGCCCGT
GTATTCATTTAATAACTTTTTGATGACCATTTCTACCAAGATTCACTAAA
CTGAATTGAAATCTTGAGAAATTACTACATTAAATTACGAAAATAATGGA
AGTGTTTTATAGCTTTTTTAGCGACTACTTTACATTTCAATGATCAGAGA
TTGAAATGCACCAAAAGAGGACTTTGATAATGGAAGGACCTTAGCTTTCA
ACGTTCAGAGATAAAGGTTGCAAAAAGTCGTTGGATATAAAACACTTTGG
TCATCTTCAACAAAACAGACGAAATAAAATAAACTATCTTCTTTTCATTT
AGCTAGCGGTTGGAAACGTATTCTCGTTCGAACGTTTGTTGGTCTCCTGT
TGACTGGTATTGGTATTCTGTTTCCGCACCTCGGTCCAGTCATCACCATT
GTGGGTGCATTTACCGTCTCTGTCGTCTCGTTCATTCTTCCTGTGTGGTT
TTACATGAAATTGAACAATTACGTCATCCCACTGCATGTCAAAGTGCTAC
ATATTGAAATCATTCTTGTGGCTGCTGTATTTGGCGCACTGGGTATTTAT
TCTGGCATCGTTGAAATGATCAAGCAATATCATTTATAGTCTGATCTAAC
TAAGGACTACTCTTGTCTTCCAAATAGACGGTAGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025262-exon-sc0000529-1575043694:36118..37309 | TCONS_00025262-exon-sc0000529-1575043694:36118..37309 | Clytia hemisphaerica | exon |
| TCONS_00025262-exon-sc0000529-1575043694:35121..35457 | TCONS_00025262-exon-sc0000529-1575043694:35121..35457 | Clytia hemisphaerica | exon |
| TCONS_00025262-exon-sc0000529-1510915933:36118..37309 | TCONS_00025262-exon-sc0000529-1510915933:36118..37309 | Clytia hemisphaerica | exon |
| TCONS_00025262-exon-sc0000529-1510915933:35121..35457 | TCONS_00025262-exon-sc0000529-1510915933:35121..35457 | Clytia hemisphaerica | exon |
| TCONS_00025262-exon-sc0000529-1491911889:36118..37309 | TCONS_00025262-exon-sc0000529-1491911889:36118..37309 | Clytia hemisphaerica | exon |
| TCONS_00025262-exon-sc0000529-1491911889:35121..35457 | TCONS_00025262-exon-sc0000529-1491911889:35121..35457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000529 | supercontig | sc0000529:35121..37309 - |
Blast
The following BLAST results are available for this feature:
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