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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025255 ID=TCONS_00025255|Name=TCONS_00025255|organism=Clytia hemisphaerica|type=transcript|length=1324bp
taacccttcgggcttgaaactcaatggtaaaGACCATTCATTGCACAATG
TGACAATTAAAAGCTACAAGTGGAGATGTCATGCACTTAAGCTAGAAAAA
CAATTCGTGTTTCCAATTTATTTTCCTCTCAGCTGCTATACATTAAACAA
CGTAGTTTTGAATACTCGTGAACGAAAGGAGCAAATTAAACCATGGGTTG
GATAAAGAAAACCTTCATCTTTGCCCTTCCAATACTTTCTTACTACATTT
ACAAGATTGTAaaagcaaactttttgatcttTGTTATAATCACGAGTCAG
ATTTACCCAAGACTTCCAATCAAGAATTTCGCAAAGTTGAATCCTGACAT
TGCAGATTTTGCGACAGGAGATGATCAAATAGTTGATGAATATGATTTTG
TGATAATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCTAACCGTTTAAGT
GAGAACAAATCATGGAAAGTTCTTCTGCTGGAAGCTGGTGGTGGGGAAAC
CATGCTGAGTGAGATCCCAGCAACAACAGTTCTTAACTTCAACACATCCA
TTGATTGGTCCTTTTTATCAGAGCCGGCCAATGATGGAAAGACTTCAACA
ATCTTTAAAAATGGACAACTGGTCATGCCAAGGGGAAAAGTTCTTGGAGG
GTCAAGCACCATCAATGTGATGGGTTACACACGTGGTAATAAACGAGATT
ATGATTTGTGGGAGGAGCAAGGAAACCCAGGATGGAGTTATGAAGATGTG
TtaccatatttcaaaaaatctgaagACCAAACCAATGAAAAGCTTACCAA
AGATACAAAGTACCATTCAACAGGCGGCTATCTTACCATTGAAGATGTAG
AAAAAGCTgatgtttttgtgaaattgatgGACGGCTTTAGTAAGATTTTA
CCGGAGAATAAGGATTATAATGGTGCAAAACAATCTGGAACTGTATTTTA
TCAAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACC
TCAAACCCAAGAGATCAAATCTCCACGTCAGTCCTTTTTCACATGTTCAA
AAGATTTTGATAGATCCTGAAACGAAAACAGCCGAAGGTGTTGTTTATAA
GAAGAATGGAAAATCAATGACAGTCAAAGCAAAGAAAGAAGTTATCTTGT
CTGCTGGTGCTTTTGGCTCTCCTCAGATCTTAATGTTATCAGGAGTTGGT
CCAAAGGAGGAATTGGagaaacATGGAATTCCGATCATCAAAGAACTTCA
AGTTGGATACAATTTACAAGATCATGTCAGCGTCTTAACGCACTTGGTCT
TCAATGAATCAATATCGTGGCCAG Run BLAST on NCBI transcript from alignment at sc0000529:203195..209516+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025255 ID=TCONS_00025255|Name=TCONS_00025255|organism=Clytia hemisphaerica|type=transcript|length=6322bp|location=Sequence derived from alignment at sc0000529:203195..209516+ (Clytia hemisphaerica)
taacccttcgggcttgaaactcaatggtaaaGACCATTCATTGCACAATG
TGACAATTAAAAGCTACAAGTGGAGATGTCATGCACTTAAGCTAGAAAAA
CAATTCGTGTTTCCAATTTATTTTCCTCTCAGCTGCTATACATTAAACAA
CGTAGTTTTGAATACTCGTGAACGAAAGGAGCAAATTAAACCATGGGTTG
GATAAAGAAAACCTTCATCTTTGCCCTTCCAATACTTTCTTACTACATTT
ACAAGATTGTAaaagcaaactttttgatcttTGTTATAATCACGAGTCAG
ATTTACCCAAGACTTCCAATCAAGAATTTCGCAAAGTTGAATCCTGACAT
TGCAGATTTTGCGACAGGAGATGATCAAATAGTTGATGAATATGATTTTG
TGATAATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCTAACCGTTTAAGT
GAGAACAAATCATGGAAAGTTCTTCTGCTGGAAGCTGGTGGTGGGGAAAC
CATGCTGAGTGAGATCCCAGCAACAACAGTTCTTAACTTCAACACATCCA
TTGATTGGTCCTTTTTATCAGAGCCGGCCAATGATGGAAAGACTTCAACA
ATCTTTAAAAATGGACAACTGGTCATGCCAAGGGGAAAAGTTCTTGGAGG
GTCAAGCACCATCAATGTGATGGGTTACACACGTGGTAATAAACGAGATT
ATGATTTGTGGGAGGAGCAAGGAAACCCAGGATGGAGTTATGAAGATGTG
TtaccatatttcaaaaaatctgaagACCAAACCAATGAAAAGCTTACCAA
AGATACAAAGTACCATTCAACAGGCGGCTATCTTACCATTGAAGATGTAG
AAAAAGCTgatgtttttgtgaaattgatgGACGGCTTTAGTAAGATTTTA
CCGGAGAATAAGGATTATAATGGTGCAAAACAATCTGGAACTGTATTTTA
TCAAAACACGATCAGGAATGGCCAGAGATGCAGTACAGCCAAAGCTTACC
TCAAACCCAAGAGATCAAATCTCCACGTCAGTCCTTTTTCACATGTTCAA
AAGATTTTGATAGATCCTGAAACGAAAACAGCCGAAGGTGTTGTTTATAA
GAAGAATGGAAAATCAATGACAGTCAAAGCAAAGAAAGAAGTTATCTTGT
CTGCTGGTGCTTTTGGCTCTCCTCAGGTAATAATTGTGTTGTTAAAAAGA
ATAGTATTTCCCTGTGTATCTTTAAGTGCCAAAACTCTCGAAACCCTAAG
TTTGGACAATACTGCaaatcttgtttttattaaacCTCATCAAAACGTCA
AGCCTGGAATTACTAGGTAATTTAGTTTGATTTTCTCTCATTTTAGATCT
TAATGTTATCAGGAGTTGGTCCAAAGGAGGAATTGGagaaacatggaatt
tcgatcATCAAAGAACTTCAAGTTGGATACAATTTACAAGATCACGTGAA
CGTTTTTTCGCATATGATTTTCAATGAGTCTATTGAACTTCCATCCAAAG
AGTAAGTTTGATAATGTCATAAAACTTAGGACACTGAATATTTCTAGGAC
TGAATTATGGAATGCTCTGCTCCATTGCCCTGTCGTGGAAATTACCCTTC
CAAAACTTGAGCTGTAGTCATTAACTTCCGTAGCTAGAGGTCAAAAAAGG
CATCTATAcatcatttttatcaatattagGGTTTCAATATCCTGCTTTAT
GTATGGAATTCAtacatttcaaaattccattgaaaCATGACCAAGACGGC
ATTGTTTACTTTCAGGGTTATTTCGTTCGACACATTCAAAGAATACTATG
AACAAAGAACAGGCCATCTCAGGAGTAATGGCGCAGGTCTTGGGATGTTT
GTTCCTTTGTCTGAAGAAGCCAAATCTAAAGATTGGCCAGAGATTCAATC
ACATTTTTTACTTCAACTAATGACGGATGTCGCTGATACTCAATGGATTT
TCAAATACAATGAAGAATTTTGGAATAATGTTTTGCTTCGGGAGCTAGAA
GGGAAACATGGTGTAACCTACTTTAATTGTCTCTTGCGACCAAAAAGCAG
gtagtttttttatatatttctaaaaaatacacccctgtatcacaggcCCG
ATGAGACTCCACCCCACAAGAAAATTTTGTCGAGATTTCGTCCCTGGTGg
gaaaaatgtataatttgacTGAAAAGTGTCCCAACAGAGttctgagaaag
gggtgtaaaaataTTGTAATAGAATAAATATATTGAAggtgagaccaatt
tgattagttgttttacgggcccgaccaaCCCTGACATTCCAAAAATCAGA
ATAaagataaaattgattttggtagtacatttttatttttattgttttcc
agaatgccaaattttcaaaattttggtagtttttcaaggttttgagaatt
taatgttcaatttttcattttatccataaaTTTGAGCTTTCTGTGTCTTT
TATTTTCTATTATGCATTTTTGTCTAGATgaagtagtttttgctgccttt
ttaggagattttagaGATGAAATTCTcctttaagttttattttttctccg
accgaccgaccctcttttttgggtagcttcgcccgtaaaacaacaaatta
aattggcctcgcctgaGAAAAAGAGTTTAACTTGAACCTAGACAAAAACA
AACTGATTGGAATCCTTggaaccaaaacaaaattaGGGCAAATTTTTCTA
TGCAAGTTATTTGACTCAGAAATTTGGGAATCGGAATAAAATAGCCTTCG
TTTtactcgaaaaaaaatttcacgttTCTTCGGTGAATAgttttttagaa
atcaaaagttgaaagtTCATTGCGTTCTTTTCTGGCCCATCCGGTATGAC
GGGTACAAATAATATCTTCAAATGATTGATCTCTGCTTTCCCCCAAAGAG
CTCCTTCAGTTTGCGTTAAAAACAAACGAAATACCACTCTACTTTTAGAG
GACGCGTCAAGTTAAGGAGCAACGACACTCAAGACCATCCACGAATCATT
CCGAACTATTTCACCCACCCTGACGACCTGAATACCTTCATTGAATCTTT
CAAATTCGGAAAGAAACTAGCAGCAACATTACCACAATANTCCGAACTAT
TTCACCCACCCTGACGACCTGAATACCTTCATTGAATCTTTCAAATTCGG
AAAGAAACTTGCAGCAACATTACCACAATACAATGCATCGATTGTCGACT
TGAAGGATCCGGCATGCATTGAATATGCATCAGGTTTGTCATTATGTCAT
CGTCATTAATAATACAGTTTTATCAAGTGTGATTATTTTTGTTGAATATA
CGATGGAAAGATAAAAGTTTGCGTAATTGACGGTGAATAGTTGAAAATTC
ACGGTAATTTTCTGATTTGATTATGCAGAGTGGTCACAACGGAAAATTTT
CCTATTCTTCTTTTAGTACGCTTAGACCAAAATGAAATATTGCTATAGTC
TAACACCCTTAACTATGCCTGAAATGATATatcattgaaaagaaattccT
TTGGCAATTTTCCCTGTTTTTGTNACTATGCCTGAAATGATATatcattg
aaaagaaattccTTTGGGAATTTCCCCTGTTTTTTCTTCAGGTTCAGATG
ACTATTACCGATGTACAGCGGTTCGAGGAGCATCAACACTCTACCATCCA
GTGGGTACGTGCAAGATGGGACCCCATACTGATGATCAAGCAGTTGTAGA
TTCAAGATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGTCGATGCAT
CAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACAATAATG
ATCGCTGAAAAAGCTGCTGATATGATCAAAGAGGACTGGAAAGACAAATA
ATGAAAAGCTATCACATCAAATGGAGGACAGTGCTGTATTTTTTGGAGTA
ATTCTATGATTTCCTAATGATTCTTGATACTTAGTTTTAGCATTTTGTAT
ATTTATGAGCTGGTCAGGGAAAGTTATGACGAGAGGGGGGAAGGTCCTAT
TCCGAAGAGTATACAATTTTCCCCAGAAAGCCTCTTCTACCATTTACAAA
TCATCTAaataatgacgtaatgtttcgagctccaaccctgaccctaactg
ataagatcgaaataatcaaaaatcgaaaacaTCGAAAAGgttaaaaagga
aaaatcgaaaaagtcacttttggccatccacaaccccgaccgaaaagtGA
CTGAACCACCCCTTACGCATGCATGTTAATGCAGAAGTCTGATTTTTTAA
CTCTTCGGAATGGGACCTTTCTCTGACTGTAACCATCCTTTAATATCCCT
AGACTAGATGCCTAactcccctgtctcagtaaaTAACTCATGAAATTCTC
CCTTAAAAAGTAAAACAACAACACCGAGATGGTGAAACGTCGAGTTTCCA
GCATTTATCAGAAAACACGGAAGGGATCTTTAGGTTTTCTTAAGGTTGAA
ATATTGTAGAGATTTTTCTATATCATAGTCAGTTGTTAACTATaagaata
tataaaattttgacCTCTAAAAAGTTAATATTTCCTagaataaaatttat
aaaataaatcTTGTAATCTCACACCTTTTAGgtgtaataaaatatttgaa
catttttagatatgattttaagaaagaaaaatggtgttcttataaaacaa
ataaaaggaCAGACTACTTTTAATTCTTTAACTCTGTGAAGAAGGAAAGG
GATGGTTCCATACAATTAGTTTGGTATGAACCTACTCCATTATGTAGAAT
AATTAGGTTCTAATTAAGTTTTGGTGTACCAATCATCGTCATAAAGAGAT
CTTGAAGGAATGATAACGATTTAGGGATAATCAAGGAACATTAATTTGTT
CCCTCTCAATCAACTTGATATTTACCATTCATTCTATGTGATATCAACTG
AACAGTTTGAAGCATGGGTTGGAAAACGAAAACATTGATTTTCCTGCTAC
CAATAATATCGTATTATGTTTACAAATTTGttaaagaaaactttttgatc
TTTGTTATAATCACGAGTCAGATTTACCCAAGACTTCCAATCGAGAATTT
CGCAAATTTGAATCCTGACATTGCAGATTTTGCGACAGGAGATGATCAAA
TAGTTGATGAATATGATTTTGTGGTTATCGGTGCAGGATCTGCAGGAGCT
GTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTGCT
CGAAGCTGGTGGTGGGGAAACAATGTTGACAGAAATGCCAGGCGGCTTTA
TACACAATGTCAACTCGCCATTAGATTGGGGTTACAAGGCAGAGCCTTCC
AAGGATAAGTTAGTTTCATCTGCAATGAAAGATGGTCAGGTTTTGTATCC
CAGAGGAAAGTTACTTGGAGGATCCAGTTCTATAAACGCACTTGTTTATG
TGAGGGGTAACAAGAAAGACTACGATGATTGGGCAAAACAAGGAAATCCA
GGATGGAGTTATGACGAGGTATTACCATATTTCTTAAAATCGGAAGATCA
AACCGATGAGAGGTTGGCAATATCAAAGTATCATGCCACAGGAGGTCCAT
TGAAGATTGAAACAGCAGAAGCACTCGAATTCTGGCAAAAGATGATGGAA
GGATGCACCAAAATCTTGCCCTTCAACCCTGACCATAATGGAGAACGACA
GACTGGATGCTCTTATTTTCAGAACACAAAAGGGAATGGTCTTCGATACA
GTACATCAAAAGCTTACCTCAAACCCAAGAGATCAAATCTTCACGTCAGT
CCATTTTCACATGTTCAGAAGCTTTTGATTGACCCTGAAACGAAAACAGC
CAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGATAGTCAGAGCCA
AAAAGGAAGTTATCTTGTCTGCTGGAGCTGTCGCATCTCCCCAGGTATGT
TTATAACAAACGATGTCAAATATCAGAATTATAATAACATTTAATTCAAT
TAATAAATCTTGTTCCCAGATCCCACTTTGTTATTACTAATGGACGTGAT
TGCTATCAGAATCGTTGATAAGAAAACTAAGGCACTAGGTGGAGTTTGAC
AAGAAATTGGATCAGTTTTCTCTCATTCCAGATCTTAATGTNTGCTATCA
GAATCATTGATAAGAAAACTAAGGCACTAGGTGGAGTTTGACAAGAAATT
AAATTTGCTTTTCTCTCATTCCAGATCTTAATGTTATCAGGAGTTGGTCC
AAAGGAGGAATTGGAAAAACATGGAATTCCGATCATCAAAGAACTTCAAG
TTGGATACAATTTACAAGATCATGTCAGCGTCTTAACGCACTTGGTCTTC
AATGAATCAATATCGTGGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025255-exon-sc0000529-1491911889:203195..204370 | TCONS_00025255-exon-sc0000529-1491911889:203195..204370 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1510915933:203195..204370 | TCONS_00025255-exon-sc0000529-1510915933:203195..204370 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1575043694:203195..204370 | TCONS_00025255-exon-sc0000529-1575043694:203195..204370 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1491911889:204541..204586 | TCONS_00025255-exon-sc0000529-1491911889:204541..204586 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1510915933:204541..204586 | TCONS_00025255-exon-sc0000529-1510915933:204541..204586 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1575043694:204541..204586 | TCONS_00025255-exon-sc0000529-1575043694:204541..204586 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1491911889:209415..209516 | TCONS_00025255-exon-sc0000529-1491911889:209415..209516 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1510915933:209415..209516 | TCONS_00025255-exon-sc0000529-1510915933:209415..209516 | Clytia hemisphaerica | exon |
| TCONS_00025255-exon-sc0000529-1575043694:209415..209516 | TCONS_00025255-exon-sc0000529-1575043694:209415..209516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000529 | supercontig | sc0000529:203195..209516 + |
Blast
BLAST of TCONS_00025255 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 2.783e-48 Identity = 126/336 (37.50%), Postives = 178/336 (52.98%), Query Frame = 1
Query: 358 FATGDDQIVDEYDFXXXXXXXXXXXXXNRLSENKSWKVLLLEAG-----GGETMLS---EIPATTVLNF-NTSIDWSFLSEPAN--DGKTSTIFKNGQLVMPRGKVLGGSSTINVMGYTRGNKRDYDLWEEQGNPGWSYEDVLPYFKKSEDQTNEKLTKDTKYHSTGGYLTIEDVE-KADVFVKLMDGFSKI-LPENKDYNGAKQSGTVFYQNTIRNGQRCSTAKAYLKP--KRSNLHVSPFSHVQKILIDPETKTAEGVVYKKNGKSMTVKAKKEVILSAGAFGSPQILMLSGVGPKEELEKHGIPIIKELQ-VGYNLQDHVSVLTHLVFNESIS 1317
A+ + DEY +V++GAGSAG V+A RL+E+ + +VLLLEAG G LS +PA V N + +W + +E DG+ L PRG+V GGSS++N M Y RG+ DY+ W+ QG GW Y LPYF+K++ ++Y G L + + + ++ + P +D NG +Q G + TI G+R S A AYL P R+NL + V ++L E A GV Y KNG+S A KEVILS GA SPQ+LMLSG+G ++L+K GIP++ L VG NLQDH+ + I+
Sbjct: 30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRV--------LYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHE----LGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPIT 351
The following BLAST results are available for this feature:
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