TCONS_00025252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025252
Unique NameTCONS_00025252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025252 ID=TCONS_00025252|Name=TCONS_00025252|organism=Clytia hemisphaerica|type=transcript|length=1754bp
ATTTAGCCCAATAATGAAGAAAATAGAAATTAGTAATTTTGGTATATTGC
CATCAGGACACATAGtcaaaaagattgaatttgagaacaagaatggtttg
aaattttctgtccTCAATTATGGAGCAACTGCTGCCAGCTTGATTTGTCC
TGATAAGAATGGGAAAAGCGACGATATAATACTTGGATATGACAACCTAG
AAGgttacttagaaaacagttactTTGGATCGACAATCGGACGTTTTGCC
AACCGTATCTGTAAAGGGAAATTCAGCCTTGATGGAGCAGATTATCAATT
GAATTGCAATAATGGATCAAACCATTTACACGGAGGATGCCAGGGATGGG
AtaagAAATTGTGGGattggaaaatcaaaaatgatgaAGTGGAGTTCCGA
TTGGAGAGCAAAGACGGTGACGAGTGTTACCCTGGCAACGTGAATGCATC
AGTCTGTTACAAACTAACTGAAGATAACGAAATACAAATTCGTTTAAAAG
CAACAACTGATCAAACTACACTCATCAATATGACCAACCATGCCTTCTTC
AATCTCAGCGGTCAAGAAAAGAACACGAAAGTTTTGGATCACGAGATGCT
TATCAATTCGTCGAAATATTTACCAGTTGACAGCACACTCATCCCAACAG
GCGAGGTTAAGGATCTATCTAAAGACCCTGTGTTTGATTTTCGGACAAAG
AAGATTATCGGACAGGATATCGAAGAAGCAGGTGGATATGATCACAATTA
TTgtttcgatgaccaaaatgacGACTTCCGCGCAAGaGTTTTCCATGAAA
ATTCTGGTCGTCAACTGGAGATTCGCTCAAGTCAACCAGGAATGCAGTTT
TATTCTGGCAACTTTTTAAACGGTCATATTGGAAAGTTGAATAACAAGTA
TGACAAACATTGTGGATTTGCGTTGGAACCTCAATTTTATCCGGATAACA
TCAATCAGCCATCCTTCACATCTTCAATAACAAAAAGTGGTGAGACTTAC
GAACAGTATATAATTTGGAAAATATCTGTGAAGAATTAATACACACTAGT
GGGTTGACTGAGTATTGGAGTATTCAGTCGTCACCCTTTCCAGACCTTGg
aaacgtaatttttgaaaacgataGATCTTTTTTACGACATCTCACGCATG
TTTTACTTGTTTGGTTTGCTGCATGACGTAGAAGTAGGCTTTTCTTATTC
AAGATTCTTTGTGATGATAGCTGGACAAGTACATGGGAATGAAGCAGTGT
CAAGTGGACCCTTGGCCAAGTGTTTCTACAAAGAGTAAAtgtaaataata
ttttctgattGATAGGGCCACTTATAAGTTCATCGAATCTTTACATCCCC
AGGTCcttaaaaacttaaaagctCATTCATAATTTGATGGAAAGCTTAGA
GTCTTCTCATCTTTTTGGGGTTTCTATTTGTTCTGTTTTTTTAACCAGAA
TCTCGACCGATTTTCGTTTCTTTATGTCAATCTCATTTCTGTAAATTTCG
AGCAAAATGAACGATATCAAATTGAAATAGGGTTACGTATAGCTCCAAAA
TTGACAGTTAGGGTTATAAGTAGGGTTTTATTTTTAGTGCAATTTTTTTA
TTACGCATATACAAAAGACAGTCAGGAGTAACACCTTAAATAAGGCGTAT
ATCTTGTTCAAGTAAGAAttccaaatttctattgtttgatACTTCCTATT
TAGGAAGTAGTGGGAATATTTTCCAAACTAGGAAAAAGGGCACTCTCTCG
TCTA
Run BLAST on NCBI

protein sequence of TCONS_00025252-protein

>TCONS_00025252-protein ID=TCONS_00025252-protein|Name=TCONS_00025252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
FSPIMKKIEISNFGILPSGHIVKKIEFENKNGLKFSVLNYGATAASLICP
DKNGKSDDIILGYDNLEGYLENSYFGSTIGRFANRICKGKFSLDGADYQL
NCNNGSNHLHGGCQGWDKKLWDWKIKNDEVEFRLESKDGDECYPGNVNAS
VCYKLTEDNEIQIRLKATTDQTTLINMTNHAFFNLSGQEKNTKVLDHEML
INSSKYLPVDSTLIPTGEVKDLSKDPVFDFRTKKIIGQDIEEAGGYDHNY
CFDDQNDDFRARVFHENSGRQLEIRSSQPGMQFYSGNFLNGHIGKLNNKY
DKHCGFALEPQFYPDNINQPSFTSSITKSGETYEQYIIWKISVKN
Run BLAST on NCBI

transcript from alignment at sc0000529:187039..191560+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025252 ID=TCONS_00025252|Name=TCONS_00025252|organism=Clytia hemisphaerica|type=transcript|length=4522bp|location=Sequence derived from alignment at sc0000529:187039..191560+ (Clytia hemisphaerica)
ATTTAGCCCAATAATGAAGAAAATAGAAATTAGTAATTTTGGTATATTGC
CATCAGGACACATAGtcaaaaagattgaatttgagaacaagaatggtttg
aaattttctgtccTCAATTATGGAGCAACTGCTGCCAGCTTGATTTGTCC
TGATAAGTGAGTTGATTgacattatattttttttgtgtgtGTTTTAAACt
taaatgagaattttttcatatgttttataagaacctgtaaaattttgctg
aggctcagctgttcttatttttttggcactttgaaattcaaattgttctt
atctttaGAGGGTGTAATTTATGGTGTATTTTATGCATTACagtataccc
aatttttactactttgagccctaaattgattgaaattgggCACCATTCAA
AACTATGTACGCTCAAAAATAAGCAAAAGTCGATCCCCTCTCAACTTGTA
TGGTCGCGTACCCTTTGTATTGACAGTACCCTTCTTCCGTGTACGTATGC
TTTACAAAGGATACTCCCCCTCAGAGCGTACATAATTTTTGAATGGCCcc
tagtagtagtagtagtagtagtagagtagtttcaggctcagaattgtttt
tgaattgttcttatttttttggcgattttgagcctcattgttcttttaaa
attgttcttacaaaagaaaaaagtgtataataaaattattttaacaaaat
gtttattttcagcACAAgcttttaaatatttaatcttTCTCATCTTACAG
GAATGGGAAAAGCGACGATATAATACTTGGATATGACAACCTAGAAGGTA
TTTTCATCCGTCGTAAACACTTTACAATTTGCAGTTTTTACAGGCAAACT
GTATAgtttctataatttgaaaatgaaatacaaTAAAGCTATAATCAAAA
AATGAATGATAGCAATTTCATTCACTCACGATGAGTTTAGTTGAATTTAG
TCATTATGAATATCTTTGTTACTACAGgttacttagaaaacagttactTT
GGATCGACAATCGGACGTTTTGCCAACCGTATCTGTAAAGGGAAATTCAG
CCTTGATGGAGCAGATTATCAATTGAATTGCAATAATGGATCAAACCATT
TACACGGAGGATGCCAGGGATGGGAtaaggtttgttttttaaacATCAAT
GGTATCGGGTTTGAATAATATAGGAAAACGAAATAGTTTTATGAGCCAAA
TGAATATAGTGCTATTAATTTTCAGGGTCTGTTGACAATTATCTAGTTTT
AATTTCCTCgtacttttccattttttttagtAATAAGCGTATATCCTAAA
ATTATGGAGTTTTCTCCTTTTCAGAAATTGTGGGattggaaaatcaaaaa
tgatgaAGTGGAGTTCCGATTGGAGAGCAAAGACGGTGACGAGTGTTACC
CTGGCAACGTGAATGCATCAGTCTGTTACAAACTAACTGAAGATAACGAA
ATACAAATTCGTTTAAAAGCAACAACTGATCAAACTACACTCATCAATAT
GACCAACCATGCCTTCTTCAATCTCAGCGGTCAAGTATtgcatttctttc
attttgtgctctctcaacctcgttcccgtgtattccaggctttattaaCC
GGGCCCGGTTTTTCAAAAGTCCATTAGATTAAATCCCGATTACCGCTGAT
AGCGATAAGATTCCGATTAGTTAATCCCGGTGATTAATTTCCGTTGTTCG
AGCGTCAGATTAACTAATCTTGGATATTTTGcctgtgttttcaaaaaatc
ttaattttgacgtcacttttcgaaagtttccaaaatattttttttctagg
aAAAAGCTTCTTAATCGTCGCTAATCCTGGTATGGGTCAGAAGCAGGATT
AAAATTTGGCCGATTCCAGATTCAAgcctattttttttttcgaacaatCG
ATGGTTCTATGTTAATCGACGCTAATCGAGACTTAATAAAAAATTGAGCT
AATCGGCCGCTAATCTTTTTTTTGAACAATCGGGCCCTGATGTGCGTCAG
AGAATATCTGTCAATATCAGTAAGCATACATAAGCTGATAAAATGCAGGG
AGCAAGTCTGGTGCTCCTCTGACACTTACTCACTATTGTATATGTTCTAA
CTACTATGTAGATGTTCATTTAATGCTACATATCTTCTCCAAGAAAGCTC
AAAGAAAGTTGTCAGTCGTATTCaatattctttaaaactttAGATTTATA
TATGTCCAAGCCTGATTTTTGCATTCTTTTAATTCGctccatattttcaa
aaacattcaaactctCTGCTTCTATGTTTGATTCTTCATATCGAGATTTT
TTCATCTACAAATTCATGATTAGGAAAAGAACACGAAAGTTTTGGATCAC
GAGATGCTTATCAATTCGTCGAAATATTTACCAGTTGACAGCACACTCAT
CCCAACAGGTTCCTAATCTTTTATACAAATGCTTTTTTTTCTACACCAAC
TTCATCAAGAAGTTGATACAGCATTTAGGCGATTAGGGGTCATTAACCTT
GGTTGCTACACAGATAACTATGTTTCGATTCCCACATGTAGCGGCttact
tggcaagtgaatgaacagGTCAACCCTTACCATGTGAgaggaattgggta
gtcagtccgaGGTGCTTACGGGGAGCCCATTGAAAGTGTATGTAGTTGCG
AAAATGGGTCTcagagcctcctgtaactcaaccaaATATCTACCGTTAGA
AGGAAAAGTTTTTCGAATGAAACCATTTCGTATACTTTGAATTCTCAAAT
TGATAATAGCATTTACCTCATTTTGATACGATAAAGAATGTTGATGTGTT
TGAATGAATGTTTCTCGAGTAATatttataatatttcaaaacggacttca
ttttctatttttcttcagGCGAGGTTAAGGATCTATCTAAAGACCCTGTG
TTTGATTTTCGGACAAAGAAGATTATCGGACAGGATATCGAAGAAGCAGG
TGGATATGATCACAATTATTgtttcgatgaccaaaatgacGACTTCCGCG
CAAGGTTAGTCTTCTCCACTCATTAATTGCTTGAATTTAGATGAGGTTCA
AGCTGTAGATTGCCCAGGGGAAGACATTTTTTGTGGGTTTTTTGGTGATA
GTGGATTAACCAGCGAGAGTAAGGCGAGAATAGTCCTTTGAAAATTTGCA
AGGTAAACATCTTTTTAGTTTGGGTGAACCCAAAAATGTTAGTAAACATT
AAAATGTAGGTTTTCTGGACAAAGTTGATGTCACAAACATCATTGGTCAT
TTTTTAAAACTAAATGAAAATACTTGATGTCACTTCGCATGTAGctaact
ttcattttcttttttttcacagaGTTTTCCATGAAAATTCTGGTCGTCAA
CTGGAGATTCGCTCAAGTCAACCAGGAATGCAGTTTTATTCTGGCAACTT
TTTAAACGGTCATATTGGAAAGTTGAATAACAAGTATGACAAACATTGTG
GATTTGCGTTGGAACCTCAATTTTATCCGGATAACATCAATCAGGTTTGT
AACATTTCAACTTGTGCTTTTTCACCTCGTTATGTTTTCAAGCATTCACC
TTAAGCTTTAGAAGGTTTTCTGAGTAAgtttattttcgaaattttcgtAT
GGTGAGGAATTCAAACGTTGAGAGCCGGTGGTACATAAAGGGCTTGTCCG
ACTTATGAACCTTTTGTGCTCTAACGGTAATAGCAACAGGCATTATAATT
ACACTctactttttgttcttttccaGCCATCCTTCACATCTTCAATAACA
AAAAGTGGTGAGACTTACGAACAGTATATAATTTGGAAAATATCTGTGAA
GAATTAATACACACTAGTGGGTTGACTGAGTATTGGAGTATTCAGTCGTC
ACCCTTTCCAGACCTTGgaaacgtaatttttgaaaacgataGATCTTTTT
TACGACATCTCACGCATGTTTTACTTGTTTGGTTTGCTGCATGACGTAGA
AGTAGGCTTTTCTTATTCAAGATTCTTTGTGATGATAGCTGGACAAGTAC
ATGGGAATGAAGCAGTGTCAAGTGGACCCTTGGCCAAGTGTTTCTACAAA
GAGTAAAtgtaaataatattttctgattGATAGGGCCACTTATAAGTTCA
TCGAATCTTTACATCCCCAGGTCcttaaaaacttaaaagctCATTCATAA
TTTGATGGAAAGCTTAGAGTCTTCTCATCTTTTTGGGGTTTCTATTTGTT
CTGTTTTTTTAACCAGAATCTCGACCGATTTTCGTTTCTTTATGTCAATC
TCATTTCTGTAAATTTCGAGCAAAATGAACGATATCAAATTGAAATAGGG
TTACGTATAGCTCCAAAATTGACAGTTAGGGTTATAAGTAGGGTTTTATT
TTTAGTGCAATTTTTTTATTACGCATATACAAAAGACAGTCAGGAGTAAC
ACCTTAAATAAGGCGTATATCTTGTTCAAGTAAGAAttccaaatttctat
tgtttgatACTTCCTATTTAGGAAGTAGTGGGAATATTTTCCAAACTAGG
AAAAAGGGCACTCTCTCGTCTA

Coding sequence (CDS) from alignment at sc0000529:187039..191560+

>TCONS_00025252 ID=TCONS_00025252|Name=TCONS_00025252|organism=Clytia hemisphaerica|type=CDS|length=8304bp|location=Sequence derived from alignment at sc0000529:187039..191560+ (Clytia hemisphaerica)
TTTAGCCCAATAATGAAGAAAATAGAAATTAGTAATTTTGGTATATTGCC
ATCAGGACACATAGtcaaaaagattgaatttgagaacaagaatggtttga
aattttctgtccTCAATTATGGAGCAACTGCTGCCAGCTTGATTTGTCCT
GATAAGAATGGGAAAAGCGACGATATAATACTTGGATATGACAACCTAGA
AGgttacttagaaaacagttactTTGGATCGACAATCGGACGTTTTGCCA
ACCGTATCTGTAAAGGGAAATTCAGCCTTGATGGAGCAGATTATCAATTG
AATTGCAATAATGGATCAAACCATTTACACGGAGGATGCCAGGGATGGGA
taagAAATTGTGGGattggaaaatcaaaaatgatgaAGTGGAGTTCCGAT
TGGAGAGCAAAGACGGTGACGAGTGTTACCCTGGCAACGTGAATGCATCA
GTCTGTTACAAACTAACTGAAGATAACGAAATACAAATTCGTTTAAAAGC
AACAACTGATCAAACTACACTCATCAATATGACCAACCATGCCTTCTTCA
ATCTCAGCGGTCAAGAAAAGAACACGAAAGTTTTGGATCACGAGATGCTT
ATCAATTCGTCGAAATATTTACCAGTTGACAGCACACTCATCCCAACAGG
CGAGGTTAAGGATCTATCTAAAGACCCTGTGTTTGATTTTCGGACAAAGA
AGATTATCGGACAGGATATCGAAGAAGCAGGTGGATATGATCACAATTAT
TgtttcgatgaccaaaatgacGACTTCCGCGCAAGaGTTTTCCATGAAAA
TTCTGGTCGTCAACTGGAGATTCGCTCAAGTCAACCAGGAATGCAGTTTT
ATTCTGGCAACTTTTTAAACGGTCATATTGGAAAGTTGAATAACAAGTAT
GACAAACATTGTGGATTTGCGTTGGAACCTCAATTTTATCCGGATAACAT
CAATCAGCCATCCTTCACATCTTCAATAACAAAAAGTGGTGAGACTTACG
AACAGTATATAATTTGGAAAATATCTGTGAAGAATTAATTTAGCCCAATA
ATGAAGAAAATAGAAATTAGTAATTTTGGTATATTGCCATCAGGACACAT
AGtcaaaaagattgaatttgagaacaagaatggtttgaaattttctgtcc
TCAATTATGGAGCAACTGCTGCCAGCTTGATTTGTCCTGATAAGAATGGG
AAAAGCGACGATATAATACTTGGATATGACAACCTAGAAGgttacttaga
aaacagttactTTGGATCGACAATCGGACGTTTTGCCAACCGTATCTGTA
AAGGGAAATTCAGCCTTGATGGAGCAGATTATCAATTGAATTGCAATAAT
GGATCAAACCATTTACACGGAGGATGCCAGGGATGGGAtaagAAATTGTG
GGattggaaaatcaaaaatgatgaAGTGGAGTTCCGATTGGAGAGCAAAG
ACGGTGACGAGTGTTACCCTGGCAACGTGAATGCATCAGTCTGTTACAAA
CTAACTGAAGATAACGAAATACAAATTCGTTTAAAAGCAACAACTGATCA
AACTACACTCATCAATATGACCAACCATGCCTTCTTCAATCTCAGCGGTC
AAGAAAAGAACACGAAAGTTTTGGATCACGAGATGCTTATCAATTCGTCG
AAATATTTACCAGTTGACAGCACACTCATCCCAACAGGCGAGGTTAAGGA
TCTATCTAAAGACCCTGTGTTTGATTTTCGGACAAAGAAGATTATCGGAC
AGGATATCGAAGAAGCAGGTGGATATGATCACAATTATTgtttcgatgac
caaaatgacGACTTCCGCGCAAGaGTTTTCCATGAAAATTCTGGTCGTCA
ACTGGAGATTCGCTCAAGTCAACCAGGAATGCAGTTTTATTCTGGCAACT
TTTTAAACGGTCATATTGGAAAGTTGAATAACAAGTATGACAAACATTGT
GGATTTGCGTTGGAACCTCAATTTTATCCGGATAACATCAATCAGCCATC
CTTCACATCTTCAATAACAAAAAGTGGTGAGACTTACGAACAGTATATAA
TTTGGAAAATATCTGTGAAGAATTAATTTAGCCCAATAATGAAGAAAATA
GAAATTAGTAATTTTGGTATATTGCCATCAGGACACATAGtcaaaaagat
tgaatttgagaacaagaatggtttgaaattttctgtccTCAATTATGGAG
CAACTGCTGCCAGCTTGATTTGTCCTGATAAGAATGGGAAAAGCGACGAT
ATAATACTTGGATATGACAACCTAGAAGgttacttagaaaacagttactT
TGGATCGACAATCGGACGTTTTGCCAACCGTATCTGTAAAGGGAAATTCA
GCCTTGATGGAGCAGATTATCAATTGAATTGCAATAATGGATCAAACCAT
TTACACGGAGGATGCCAGGGATGGGAtaagAAATTGTGGGattggaaaat
caaaaatgatgaAGTGGAGTTCCGATTGGAGAGCAAAGACGGTGACGAGT
GTTACCCTGGCAACGTGAATGCATCAGTCTGTTACAAACTAACTGAAGAT
AACGAAATACAAATTCGTTTAAAAGCAACAACTGATCAAACTACACTCAT
CAATATGACCAACCATGCCTTCTTCAATCTCAGCGGTCAAGAAAAGAACA
CGAAAGTTTTGGATCACGAGATGCTTATCAATTCGTCGAAATATTTACCA
GTTGACAGCACACTCATCCCAACAGGCGAGGTTAAGGATCTATCTAAAGA
CCCTGTGTTTGATTTTCGGACAAAGAAGATTATCGGACAGGATATCGAAG
AAGCAGGTGGATATGATCACAATTATTgtttcgatgaccaaaatgacGAC
TTCCGCGCAAGaGTTTTCCATGAAAATTCTGGTCGTCAACTGGAGATTCG
CTCAAGTCAACCAGGAATGCAGTTTTATTCTGGCAACTTTTTAAACGGTC
ATATTGGAAAGTTGAATAACAAGTATGACAAACATTGTGGATTTGCGTTG
GAACCTCAATTTTATCCGGATAACATCAATCAGCCATCCTTCACATCTTC
AATAACAAAAAGTGGTGAGACTTACGAACAGTATATAATTTGGAAAATAT
CTGTGAAGAATTAATTTAGCCCAATAATGAAGAAAATAGAAATTAGTAAT
TTTGGTATATTGCCATCAGGACACATAGtcaaaaagattgaatttgagaa
caagaatggtttgaaattttctgtccTCAATTATGGAGCAACTGCTGCCA
GCTTGATTTGTCCTGATAAGAATGGGAAAAGCGACGATATAATACTTGGA
TATGACAACCTAGAAGgttacttagaaaacagttactTTGGATCGACAAT
CGGACGTTTTGCCAACCGTATCTGTAAAGGGAAATTCAGCCTTGATGGAG
CAGATTATCAATTGAATTGCAATAATGGATCAAACCATTTACACGGAGGA
TGCCAGGGATGGGAtaagAAATTGTGGGattggaaaatcaaaaatgatga
AGTGGAGTTCCGATTGGAGAGCAAAGACGGTGACGAGTGTTACCCTGGCA
ACGTGAATGCATCAGTCTGTTACAAACTAACTGAAGATAACGAAATACAA
ATTCGTTTAAAAGCAACAACTGATCAAACTACACTCATCAATATGACCAA
CCATGCCTTCTTCAATCTCAGCGGTCAAGAAAAGAACACGAAAGTTTTGG
ATCACGAGATGCTTATCAATTCGTCGAAATATTTACCAGTTGACAGCACA
CTCATCCCAACAGGCGAGGTTAAGGATCTATCTAAAGACCCTGTGTTTGA
TTTTCGGACAAAGAAGATTATCGGACAGGATATCGAAGAAGCAGGTGGAT
ATGATCACAATTATTgtttcgatgaccaaaatgacGACTTCCGCGCAAGa
GTTTTCCATGAAAATTCTGGTCGTCAACTGGAGATTCGCTCAAGTCAACC
AGGAATGCAGTTTTATTCTGGCAACTTTTTAAACGGTCATATTGGAAAGT
TGAATAACAAGTATGACAAACATTGTGGATTTGCGTTGGAACCTCAATTT
TATCCGGATAACATCAATCAGCCATCCTTCACATCTTCAATAACAAAAAG
TGGTGAGACTTACGAACAGTATATAATTTGGAAAATATCTGTGAAGAATT
AATTTAGCCCAATAATGAAGAAAATAGAAATTAGTAATTTTGGTATATTG
CCATCAGGACACATAGtcaaaaagattgaatttgagaacaagaatggttt
gaaattttctgtccTCAATTATGGAGCAACTGCTGCCAGCTTGATTTGTC
CTGATAAGAATGGGAAAAGCGACGATATAATACTTGGATATGACAACCTA
GAAGgttacttagaaaacagttactTTGGATCGACAATCGGACGTTTTGC
CAACCGTATCTGTAAAGGGAAATTCAGCCTTGATGGAGCAGATTATCAAT
TGAATTGCAATAATGGATCAAACCATTTACACGGAGGATGCCAGGGATGG
GAtaagAAATTGTGGGattggaaaatcaaaaatgatgaAGTGGAGTTCCG
ATTGGAGAGCAAAGACGGTGACGAGTGTTACCCTGGCAACGTGAATGCAT
CAGTCTGTTACAAACTAACTGAAGATAACGAAATACAAATTCGTTTAAAA
GCAACAACTGATCAAACTACACTCATCAATATGACCAACCATGCCTTCTT
CAATCTCAGCGGTCAAGAAAAGAACACGAAAGTTTTGGATCACGAGATGC
TTATCAATTCGTCGAAATATTTACCAGTTGACAGCACACTCATCCCAACA
GGCGAGGTTAAGGATCTATCTAAAGACCCTGTGTTTGATTTTCGGACAAA
GAAGATTATCGGACAGGATATCGAAGAAGCAGGTGGATATGATCACAATT
ATTgtttcgatgaccaaaatgacGACTTCCGCGCAAGaGTTTTCCATGAA
AATTCTGGTCGTCAACTGGAGATTCGCTCAAGTCAACCAGGAATGCAGTT
TTATTCTGGCAACTTTTTAAACGGTCATATTGGAAAGTTGAATAACAAGT
ATGACAAACATTGTGGATTTGCGTTGGAACCTCAATTTTATCCGGATAAC
ATCAATCAGCCATCCTTCACATCTTCAATAACAAAAAGTGGTGAGACTTA
CGAACAGTATATAATTTGGAAAATATCTGTGAAGAATTAATTTAGCCCAA
TAATGAAGAAAATAGAAATTAGTAATTTTGGTATATTGCCATCAGGACAC
ATAGtcaaaaagattgaatttgagaacaagaatggtttgaaattttctgt
ccTCAATTATGGAGCAACTGCTGCCAGCTTGATTTGTCCTGATAAGAATG
GGAAAAGCGACGATATAATACTTGGATATGACAACCTAGAAGgttactta
gaaaacagttactTTGGATCGACAATCGGACGTTTTGCCAACCGTATCTG
TAAAGGGAAATTCAGCCTTGATGGAGCAGATTATCAATTGAATTGCAATA
ATGGATCAAACCATTTACACGGAGGATGCCAGGGATGGGAtaagAAATTG
TGGGattggaaaatcaaaaatgatgaAGTGGAGTTCCGATTGGAGAGCAA
AGACGGTGACGAGTGTTACCCTGGCAACGTGAATGCATCAGTCTGTTACA
AACTAACTGAAGATAACGAAATACAAATTCGTTTAAAAGCAACAACTGAT
CAAACTACACTCATCAATATGACCAACCATGCCTTCTTCAATCTCAGCGG
TCAAGAAAAGAACACGAAAGTTTTGGATCACGAGATGCTTATCAATTCGT
CGAAATATTTACCAGTTGACAGCACACTCATCCCAACAGGCGAGGTTAAG
GATCTATCTAAAGACCCTGTGTTTGATTTTCGGACAAAGAAGATTATCGG
ACAGGATATCGAAGAAGCAGGTGGATATGATCACAATTATTgtttcgatg
accaaaatgacGACTTCCGCGCAAGaGTTTTCCATGAAAATTCTGGTCGT
CAACTGGAGATTCGCTCAAGTCAACCAGGAATGCAGTTTTATTCTGGCAA
CTTTTTAAACGGTCATATTGGAAAGTTGAATAACAAGTATGACAAACATT
GTGGATTTGCGTTGGAACCTCAATTTTATCCGGATAACATCAATCAGCCA
TCCTTCACATCTTCAATAACAAAAAGTGGTGAGACTTACGAACAGTATAT
AATTTGGAAAATATCTGTGAAGAATTAATTTAGCCCAATAATGAAGAAAA
TAGAAATTAGTAATTTTGGTATATTGCCATCAGGACACATAGtcaaaaag
attgaatttgagaacaagaatggtttgaaattttctgtccTCAATTATGG
AGCAACTGCTGCCAGCTTGATTTGTCCTGATAAGAATGGGAAAAGCGACG
ATATAATACTTGGATATGACAACCTAGAAGgttacttagaaaacagttac
tTTGGATCGACAATCGGACGTTTTGCCAACCGTATCTGTAAAGGGAAATT
CAGCCTTGATGGAGCAGATTATCAATTGAATTGCAATAATGGATCAAACC
ATTTACACGGAGGATGCCAGGGATGGGAtaagAAATTGTGGGattggaaa
atcaaaaatgatgaAGTGGAGTTCCGATTGGAGAGCAAAGACGGTGACGA
GTGTTACCCTGGCAACGTGAATGCATCAGTCTGTTACAAACTAACTGAAG
ATAACGAAATACAAATTCGTTTAAAAGCAACAACTGATCAAACTACACTC
ATCAATATGACCAACCATGCCTTCTTCAATCTCAGCGGTCAAGAAAAGAA
CACGAAAGTTTTGGATCACGAGATGCTTATCAATTCGTCGAAATATTTAC
CAGTTGACAGCACACTCATCCCAACAGGCGAGGTTAAGGATCTATCTAAA
GACCCTGTGTTTGATTTTCGGACAAAGAAGATTATCGGACAGGATATCGA
AGAAGCAGGTGGATATGATCACAATTATTgtttcgatgaccaaaatgacG
ACTTCCGCGCAAGaGTTTTCCATGAAAATTCTGGTCGTCAACTGGAGATT
CGCTCAAGTCAACCAGGAATGCAGTTTTATTCTGGCAACTTTTTAAACGG
TCATATTGGAAAGTTGAATAACAAGTATGACAAACATTGTGGATTTGCGT
TGGAACCTCAATTTTATCCGGATAACATCAATCAGCCATCCTTCACATCT
TCAATAACAAAAAGTGGTGAGACTTACGAACAGTATATAATTTGGAAAAT
ATCTGTGAAGAATTAATTTAGCCCAATAATGAAGAAAATAGAAATTAGTA
ATTTTGGTATATTGCCATCAGGACACATAGtcaaaaagattgaatttgag
aacaagaatggtttgaaattttctgtccTCAATTATGGAGCAACTGCTGC
CAGCTTGATTTGTCCTGATAAGAATGGGAAAAGCGACGATATAATACTTG
GATATGACAACCTAGAAGgttacttagaaaacagttactTTGGATCGACA
ATCGGACGTTTTGCCAACCGTATCTGTAAAGGGAAATTCAGCCTTGATGG
AGCAGATTATCAATTGAATTGCAATAATGGATCAAACCATTTACACGGAG
GATGCCAGGGATGGGAtaagAAATTGTGGGattggaaaatcaaaaatgat
gaAGTGGAGTTCCGATTGGAGAGCAAAGACGGTGACGAGTGTTACCCTGG
CAACGTGAATGCATCAGTCTGTTACAAACTAACTGAAGATAACGAAATAC
AAATTCGTTTAAAAGCAACAACTGATCAAACTACACTCATCAATATGACC
AACCATGCCTTCTTCAATCTCAGCGGTCAAGAAAAGAACACGAAAGTTTT
GGATCACGAGATGCTTATCAATTCGTCGAAATATTTACCAGTTGACAGCA
CACTCATCCCAACAGGCGAGGTTAAGGATCTATCTAAAGACCCTGTGTTT
GATTTTCGGACAAAGAAGATTATCGGACAGGATATCGAAGAAGCAGGTGG
ATATGATCACAATTATTgtttcgatgaccaaaatgacGACTTCCGCGCAA
GaGTTTTCCATGAAAATTCTGGTCGTCAACTGGAGATTCGCTCAAGTCAA
CCAGGAATGCAGTTTTATTCTGGCAACTTTTTAAACGGTCATATTGGAAA
GTTGAATAACAAGTATGACAAACATTGTGGATTTGCGTTGGAACCTCAAT
TTTATCCGGATAACATCAATCAGCCATCCTTCACATCTTCAATAACAAAA
AGTGGTGAGACTTACGAACAGTATATAATTTGGAAAATATCTGTGAAGAA
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014186XLOC_014186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025252-exon-sc0000529-1491911889:187039..187194TCONS_00025252-exon-sc0000529-1491911889:187039..187194Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:187039..187194TCONS_00025252-exon-sc0000529-1510915933:187039..187194Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:187039..187194TCONS_00025252-exon-sc0000529-1575043694:187039..187194Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1491911889:187789..187835TCONS_00025252-exon-sc0000529-1491911889:187789..187835Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:187789..187835TCONS_00025252-exon-sc0000529-1510915933:187789..187835Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:187789..187835TCONS_00025252-exon-sc0000529-1575043694:187789..187835Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1491911889:188016..188167TCONS_00025252-exon-sc0000529-1491911889:188016..188167Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:188016..188167TCONS_00025252-exon-sc0000529-1510915933:188016..188167Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:188016..188167TCONS_00025252-exon-sc0000529-1575043694:188016..188167Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1491911889:188363..188572TCONS_00025252-exon-sc0000529-1491911889:188363..188572Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:188363..188572TCONS_00025252-exon-sc0000529-1510915933:188363..188572Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:188363..188572TCONS_00025252-exon-sc0000529-1575043694:188363..188572Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1491911889:189362..189446TCONS_00025252-exon-sc0000529-1491911889:189362..189446Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:189362..189446TCONS_00025252-exon-sc0000529-1510915933:189362..189446Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:189362..189446TCONS_00025252-exon-sc0000529-1575043694:189362..189446Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1491911889:189907..190042TCONS_00025252-exon-sc0000529-1491911889:189907..190042Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:189907..190042TCONS_00025252-exon-sc0000529-1510915933:189907..190042Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:189907..190042TCONS_00025252-exon-sc0000529-1575043694:189907..190042Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1491911889:190361..190532TCONS_00025252-exon-sc0000529-1491911889:190361..190532Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:190361..190532TCONS_00025252-exon-sc0000529-1510915933:190361..190532Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:190361..190532TCONS_00025252-exon-sc0000529-1575043694:190361..190532Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1491911889:190765..191560TCONS_00025252-exon-sc0000529-1491911889:190765..191560Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1510915933:190765..191560TCONS_00025252-exon-sc0000529-1510915933:190765..191560Clytia hemisphaericaexon
TCONS_00025252-exon-sc0000529-1575043694:190765..191560TCONS_00025252-exon-sc0000529-1575043694:190765..191560Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025252-proteinTCONS_00025252-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:187039..191560 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.4861	27.0051	52.0248	53.2894	1.67221	1.71293	4.75606	4.80911	6.792	4.79373	5.25779	7.34073	8.07885	7.83486	15.8686	17.4574	6.68778	6.76707	2.24573	2.57793	3.08438	3.34377	11.6104	11.5231	5.1774	5.85067	3.35467	2.68145	6.54813	6.88901
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015443Aldose_1-epimerase
IPR008183Aldose_1/G6P_1-epimerase
IPR014718GH-type_carb-bd
IPR011013Gal_mutarotase_SF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
GO:0030246carbohydrate binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0019318hexose metabolic process
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0019318 hexose metabolic process
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016853 isomerase activity
Blast
[Close]
BLAST of TCONS_00025252 vs. Swiss-Prot (Human)
Match: GALM (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.817e-86
Identity = 145/345 (42.03%), Postives = 213/345 (61.74%), Query Frame = 2 
Query:   14 MKKIEISNFGILPSGH-IVKKIEFENKNGLKFSVLNYGATAASLICPDKNGKSDDIILGYDNLEGYLE-NSYFGSTIGRFANRICKGKFSLDGADYQLNCNNGSNHLHGGCQGWDKKLWDWKIKNDEVEFRLESKDGDECYPGNVNASVCYKLTEDNEIQIRLKATTDQTTLINMTNHAFFNLSGQEKNTKVLDHEMLINSSKYLPVDSTLIPTGEVKDLSKDPVFDFRTKKIIGQDIEE--AGGYDHNYCFDDQNDD-FRARVFHENSGRQLEIRSSQPGMQFYSGNFLNGHI-GKLNNKYDKHCGFALEPQFYPDNINQPSFTSSITKSGETYEQYIIWKISV 1030
            M  +  + FG LPSG   V+K + ++ + L+  ++++G T  +L   D+ G++ D++LG+  LEGYL+   YFG+ IGR ANRI KG F +DG +Y L  N   N LHGG +G+DK LW  ++ ++ V+F   S DG+E YPG +   V Y L +  E+ +  +A   Q T +N+TNH++FNL+GQ  +  + DHE+ I +  YLPVD TLIPTGEV  + +   FD R    +G+ +++    G+DHN+C     +  F ARV H  SGR LE+ ++QPG+QFY+GNFL+G + GK    Y KH GF LE Q +PD +NQP F   + + GE Y+    +K SV
Sbjct:    1 MASVTRAVFGELPSGGGTVEKFQLQS-DLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNGVQFSRISPDGEEGYPGELKVWVTYTL-DGGELIVNYRAQASQATPVNLTNHSYFNLAGQ-ASPNINDHEVTIEADTYLPVDETLIPTGEVAPV-QGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341
The following BLAST results are available for this feature:
BLAST of TCONS_00025252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GALM2.817e-8642.03Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
back to top