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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025250 ID=TCONS_00025250|Name=TCONS_00025250|organism=Clytia hemisphaerica|type=transcript|length=2370bpRun BLAST on NCBI protein sequence of TCONS_00025250-protein >TCONS_00025250-protein ID=TCONS_00025250-protein|Name=TCONS_00025250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp MCSTTNNAESALERAQLLKNAISEPNLKFDEVDPRKVLIIAGHHNYIAIARun BLAST on NCBI transcript from alignment at sc0000529:143488..158739+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025250 ID=TCONS_00025250|Name=TCONS_00025250|organism=Clytia hemisphaerica|type=transcript|length=15252bp|location=Sequence derived from alignment at sc0000529:143488..158739+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000529:143488..158739+ >TCONS_00025250 ID=TCONS_00025250|Name=TCONS_00025250|organism=Clytia hemisphaerica|type=CDS|length=20280bp|location=Sequence derived from alignment at sc0000529:143488..158739+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025250 vs. Swiss-Prot (Human)
Match: KCTD3 (BTB/POZ domain-containing protein KCTD3 OS=Homo sapiens GN=KCTD3 PE=1 SV=2) HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0 Identity = 273/456 (59.87%), Postives = 357/456 (78.29%), Query Frame = 1
Query: 562 VDPRKVLIIAGHHNYIAIAYAHYVFCYRLEDQVGWRLIFTSQYLDSTVEKISLNVKM----HGTK--TIAITSGSKVWIYNCD---SGQQIGHFNLTVTIDASFFVGTQLVCLSYTGKIGVWNVHTKSWRVQDVIEISSYDTAGSVLLLGGTNGIIFYVDMDKFPLRMKDNDLLVTELFKDPQGDAITALSVYLTPRATFCGNWIEIAYGTSSGAVRVIVHHPETVSSGPQLFQTFLVHRSSVNRVTLSEKQLISVCSEYNHVRTWSVTRFRGMISTQPGPTSISSFNVVALEQNNTHASYASGNKIGPYGERDEQLLFVQKVVPDTDQIFVRIAASGKRLMTCKSVDGSRITASTVHECDAAARMGSRPRRFLFTGHGNGSLQMWDITTAIERASKTPEFGNILGPSDQELLKLLDQCDLSVSRCTTPRRFNSEASLTSQFPNNILRFQNSSSSL 1902
VDPRKVLI+AGHHN+I AYAH+ CYR+++ GW+ +FTS YLD T+E+++LN K+ HG K +A+ S S + +++ SG +IG F+L V +DA FF+G QLV S+TGK+GVWN T+ W+VQDV+ I+SYDTAGS LLLG NG I+Y+DM KFPLRMKDNDLLVTEL+ DP DAITALSVYLTP+ + GNWIEIAYGTSSGAVRVIV HPETV SGPQLFQTF VHRS V ++ LSEK L+SVC++ NHVRTW+VTRFRGMISTQPG T ++SF +++LE+ +H SY+SGN IGP+GERD+Q +F+QKVVP T+++FVR++++GKR+ ++VD + I++ TV EC+ ++RMGSRPRR+LFTGH NGS+QMWD+TTA++ +K+ E ++ GP+++ELLKLLDQCDLS SRC TP + + TS ++ LR NSS L
Sbjct: 182 VDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQVFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVPVDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRMKDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQMWDLTTAMDMVNKS-EDKDVGGPTEEELLKLLDQCDLSTSRCATP----NISPATSVVQHSHLRESNSSLQL 632 HSP 2 Score: 162.54 bits (410), Expect = 3.056e-41 Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 2
Query: 62 SYPDA-----EIINLNVGGRKFATSRSTLTWIPDSFFSCLLSGRIPSVKDENGAYFIDRDPESFVPVLNFLRTKDLNLNGIDPKIVLHEAQYFGITPIVRRLSLCNELDNNPCGDVLFIGY 409
S+P A EI+ LNVGG +F+TSR TL WIPDSFFS LLSGRI +++DE GA FIDRDP +F P+LNFLRTK+L+L G+ ++ HEA+++GITP+VRRL LC EL+ + CG VLF GY
Sbjct: 8 SFPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETGAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSSCGSVLFHGY 128 The following BLAST results are available for this feature:
BLAST of TCONS_00025250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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