TCONS_00025248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025248
Unique NameTCONS_00025248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025248 ID=TCONS_00025248|Name=TCONS_00025248|organism=Clytia hemisphaerica|type=transcript|length=1847bp
CTTATGTGAATGAGAGACTTTCTATTAAGCTGACTGATGACGAGACTTCT
TGAAGACCAGTTTGAGTTAAAACATGTTTCATTGACGATAATTTTTTACA
ACTTGTTATCTATGAGGGTAGAGACAAAGTCAAAGTTTTGGACGATTAAC
CATTTTGCTAATTAGTGAAAGAAACCCTAAATTGGGGTAAAAAGAACTCG
AGTGACAATACACGAAATTTTGTACTGAAGaataaggcttgaaaaatttt
ACAGGAGAAACTTCTTTTGATTTGCTTGCATAACTGATGCGGAACAATGG
AATGGATAAAATAACTTCACCGGATATCCGATCACTTGGTGGAAACCAGT
TCGTTCAAATTTCGGTACGCAATGCAAGAACACATTTGAATGATGGAAAG
GCACAATTTACTGATTTCGAAATCGAATTAAAGACCAATCACATCGCATT
CACATTGAAGAGCTCGAAAGTTCGAAGAAGATATTCAGACTTTGTATGGC
TGAGGAACAGGCTGTCAAAGGATACAATCGACTCAAATTCATTACCGTCA
CTACCAGGAAGAAGGTTGTTTGGTCGTTTCAACAAAGATTTCATCAAACA
AAGACAGAAGAAATTACAAGAATTCCTGTTcggGTTGGCACAGAACAATG
TTTATCTATCACACGCAGCCATCCACTTGTTTCTACAAAGCAAACTTTCC
GTTGAAGAAATCGATTCTTACTTGGACAACAACCAAGAAGAAGATGCTTC
TGAAACTATCCTCGCCGAATCTGAAGGAAAAGCTCGTTTGAATGGATACG
AGGCTAGAGATTTAACGACCGATGGATTGAGCGACCCTGGTGATTTAGAG
GATGCCATTGATAATAATAACAGTTACACGGAAAGTTTGGGTTCGATTCC
TGTAGCGGATAAAGAGGTTTTGAGCGATACGAATGACGGAAATAACGCAG
ATGACGAGCTAGATGATGCAGCGCCGCAGGATGATGCTGAAAGTGAGAAC
AATGAAGGGAATGTGTCGGATGATGAAGAGACGTTAGTCGAGGAGTTGAA
CAAGTTGAGAATGTCATTACCAGCTCCTTTAATCGCCACATCCTCAGACA
CCGATCGTTTTGGAAGTTCTTTCGAATATTCAGACGACGACCAATCGCCT
TTAGAATCTTCCGGTGAATCCGAAGGTGATTCTTCCTCCATAGACCGCAG
GAGCCTCCGTAGCAATCCTCCACTTGCAAGAAACAGTCAAACACCTTCAC
GAGTCAATTCTCATGATAACATACGAAGTCCATCGAGGAAATCAAAAAAA
CGGTATTCGTCGAGGACAAGCAGTTTTAGAAAACTTTACAATTCAAATGC
TTCATTGCCGGAATTTTACAATCCGTCATATGGAGACGGAGTAGCAGCCG
ATGAACGAGAGCGATCATTACGAAGAAGTAAGTCAGTTTACGAGACGAGG
ACAAAACGGCGGAACCGATACAAGTCAGAGATTCTTTACACAGACGTTTC
CACGAGCGATACAAGCAAATGGAAAACACACCAAAGACACCACAGTTTGA
ATCGAACTCCTTCTTCAAGGAAAGTTCGTCGATCAACTTCCTTCGCATCT
TCAATCGATAGGACTCCTGTGCGAAGGAAGATCAGCTTGAATGAATATAT
TATTGTAGGGCGTGAATCATTGGTTGACCTGAGGACCAATGAAACGTCTC
GTGGAGGTGACGAAGACTTCAATAAAAGCTCAttgtaaaaacaaaatttt
ccatATCCTCTTTATATATACTACCGTGAGAATCACAATGAATGAATATT
ACACTGAAGGCTGTGAATATATTGTAAATATTAGGATTCTATTCGAC
Run BLAST on NCBI

transcript from alignment at sc0000529:109597..115678+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025248 ID=TCONS_00025248|Name=TCONS_00025248|organism=Clytia hemisphaerica|type=transcript|length=6082bp|location=Sequence derived from alignment at sc0000529:109597..115678+ (Clytia hemisphaerica)
CTTATGTGAATGAGAGACTTTCTATTAAGCTGACTGATGACGAGACTTCT
TGAAGACCAGTTTGAGTTAAAACATGTTTCATTGACGATAATTTTTTACA
ACTTGTTATCTATGAGGGTAGAGACAAAGTCAAAGTTTTGGACGATTAAC
CATTTTGCTAATTAGTGAAAGAAACCCTAAATTGGGGTAAAAAGAACTCG
AGTGACAATACACGAAATTTTGTACTGAAGaataaggcttgaaaaatttt
ACAGGAGAAACTTCTTTTGATTTGCTTGCATAACTGATGCGGAACAATGG
AATGGATAAAATAACTTCACCGGATATCCGATCACTTGGTGGAAACCAGG
TAATAGTTGGGTTCATTTCaactgaccaatcagaagctgaGAACACTCTG
ATAGTTCTATGATGGGGATGAAtgctttttcattaaaaataagttaattC
TTGGGTTAGTCCTGGCTGTTCTTGTTTTTCGGTGATTTTCAGGGTACTTA
TTGTCCTCACATGCATTCACATTTAAGGCGTTTGGCAGCTATTTATGAAA
TCTGCACGACTTGGATTTTTCTTAACAGTTTTGGGCAGAGTCTTTTTTCT
AATACAAATGGGTGCACGGAAATAGACCGGTCTGATAATACAATGTCATT
AAAATTAAGTATCCTTTCAATCTGCATAAAACATTATTTTAGCAAATAAC
CGAAAACTTAAATTCATATTATTCTCTTAAGTGCCAGATCGAATTTTAGT
ATGACTGTGAATCAATTTCCAAATCTAACGAGCGATCACGAAGCACTTGT
TCCCATTATCTTATCATCAGTTGTCGAAAACTTTCGTCCGAGAACTATGA
CTGTGCATGACACAAGTGAAACAAAACGTGGGAAAATATAATCATGTATG
TCTGTTTCTGTCTGTAAACATCTCGCTCAGAAAAAGTTGTTCAGCAAGTA
GATCATCTGTTGTTCGCGTTCATATGAGAGAGGTAGTCCTTCCGATGAAT
GGAACAAGCCCTGTCTAGGACAGCATCCCCTGTATTGCGATAGGGAAACC
ACTGCGCTTACCTGACCCTGCAAATACGTACATACGACACAGAGCTGCTG
GCGCATACCAACTATACCCGAACGACTCGTGAGGACAGTGGTCGAACCTA
ACAAGTATTAACAACCACGCCAGAGTCAGACATATCTCCCCACACGTTTG
TATTAGAATATTTTACTGATTAATGTACACAACACTGAGCAGGAGCAAAA
CCCGAACTCCTATACGAAATTCAAGACTGTATCCATTACACAACTGCGCC
ATCGGGTTAGTTTACGCTTTACGAAAAAACTTGACAAAGTATTCAATCTT
CAGAATACAAGGATATATtcatcaaaatatataaacaaaacttttagCTC
ACTTTAAGTCCATTGTGCTTTTCTGGTAGAATAGGGGGCAATAAAAAACT
CAAGCACAAACGTGAACATAGCAATTGGGGCCCAGGGTCCATTCTGTAGT
TACGCAATCTCAATGAATGAATGGAAATGTTTTGAGACTTAAAACAAGAG
AGTTAATGGGCTNTTCTGTAGTTACGCAATCTCAATGAATGAATGGAAAT
GTTTTGAGACTTAAAAAGAGAGAGTTAATGGGCTGGCGGTCTTCTTTATG
ACATCAGCAAGACTAAGTTCTAACGTGTAGGTGATCGATTAAAATTAAGA
TTTCAAAGATATTTAGATGGAAGGTTTTAATGAAATCATCCTACATGATC
TAACATGATTCGATAAGTGTTCAGACACCAACCAATTAATTAGAGCGATA
TCTTTTACTTTCCTTCTTCACGAAATATCggagtttttaaaaaattgcct
GAAATCACATGATTTTACAGGACAGTCAATACATAAGCTCGCCAGTAACT
TCGGCGTGGAAGAGAGGTGACCATAACAAGTTAAAAAGGGTCCTTCCTTA
AATAATAAATGTGGATGAATTGTTTGCCATTCTGATGAACCTTCAATCTC
TCTTTGATCGACTTCTTGAAATTTGGTGATTTGAGGACCCTATTAGATTG
TCAAaggttgaaaaaagattttatacCCATCCCTCTGCGCCTTATTCGAG
TATCTTATTCAAACCGTCGATCATCgaatttctttattcattagGCCGTG
AAACGTCACGCAAACCAAAAGATAATTAACAAAGAGTAGCAAACCATgga
caaaaaaactttattacCAGTTTTTGCCATTCTTCTAAAAAGTTTGTTGT
TTCGCATTGAGGCGAAAACAAGAAAAAGGGGACAGTTTTTTCGACGCAAT
AATGCGAAAACTAATATTAACATACGAATGTTGATTAATTTccatacaaa
aaaaacaatttcttgaaatgttttttgttgtatttgtttgcGACGGTTGA
GAAAGGCTGTCTACTCTACTATGaataaaattactttaaaaatacaaaaa
atgaagCTTTAAGAAATTAGCATTGCGTCTCGCTCGCTTGCTTGTGTAGA
GTGAAATGATGAAAACTTGAGAGGGAAGTTGTGTTTTGTGAGAGAAAGGA
ATGCTGCGCCAGAAACGAAAGAAAAGATGTACTTTCAAAGATGAGACGGT
ACTTTGAACTCATACTTGAatgagtttttttgtttgttacaTAAAATAAT
GTTGGTAAAATCCCCTTGTAACAAAACTGCCCTGAAAATAACcttatttt
agaattttgacTGCTTCTTTTGTAATGTAATTTTCGACCCTGATTGTGAC
CCAGTCTCTCTTATACTTTCAGTTCGTTCAAATTTCGGTACGCAATGCAA
GAACACATTTGAATGATGGAAAGGCACAATTTACTGATTTCGAAATCGAA
TTAAAGGTATTTATAATAACATCTTCTGATTGGCTTGAtaaaatggtttt
aattacCCTTGACTATTCATTTAATCCAAAATACCAGATATCATTTAAAA
GTCTATTCAACTTTTAGGATTCTTAAGTCGAATACGATACGTCTCAAGAT
TGACGTCATTTACTGATACTAGGCAACATTAATAACAAACCAGACCTTCT
TCGTCAGAAGCTGACATACAGTGAATGCGTTAAATGGTGCCTTTTACTTC
ATTCACCTCAATTACCTTATTTTAGACCAATCCCCTTTATTCACCCCAAT
CAACTCTTTTTTAGACCAATCACATCGCATTCACATTGAAGAGCTCGAAA
GTTCGAAGAAGATATTCAGACTTTGTATGGCTGAGGAACAGGCTGTCAAA
GGATACAATCGACTCGTAAGTCATCTATTGTCAAACTCACCCATCCCTCT
GTTTCTCAGAGAGTCAACTATGTACATTTCGTTGATATTCTCCCGAAAAG
CATTGGGAATAAGAGGAGTGAAGAAGTGATGAGCATCTGAAGTGATAATT
TTAAAGGGAGACATACCTGTCAAACGATCCCTATTTTGTTTCTGTTCATA
TAATGCGGCTTTGCCATTCATGTCTAGTGTACTTCGGACCATCTCCAATC
AgctctgtaaaaataaaaggaagaagtTGCAATGTCAAGGAGAACAACTA
CCTTCTTTGCTTGATAGTTCTTATGTCGTTTGGATCAATAAATTGTAACG
GGGCTAAATACTTAGTGTAATATTTTACGTTTTTGGTAAAAGCCACAATA
TCAAGAGTTGCATTTTTTAATCCATTTTAATTGTCTCGTTAACATAATTA
GAATTCTTTGTTTAGAAATTCATTACCGTCACTACCAGGAAGAAGGTTGT
TTGGTCGTTTCAACAAAGATTTCATCAAACAAAGACAGAAGAAATTACAA
GAATTCCTGTTcgggtaatttttcttctttttcatatttataCGTTTAGA
AGATCGCCTTGTCTTGTTTCGAAGTGCTTTTCTTTACAgaacttcctttt
ataaaaattggacCTCATGTCAAATCTGCTCTaatagttccatttatact
gagacaGAAAAATCGTCTAAgacgagtagtttgtaaaatgtgatctgtgg
aggagttcctatttattgaaacatgaatggaaagtacactcctccataat
gttttctaaattgctcgtctcagacaaattaatcgtctcagCATAGTGTG
CACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNggggccccccccccccccccgggggggatGGT
Gagagttaatttctttaggtgggactttgggtgttttggaaaaagttaaa
gtaaaatttcttattttcagattttattatatattttttctatatatttc
ataaataatTGTTTACCATGgtaaacttttctttttattattacaGGTCA
TTTGATGTttgaataaatatctttaagaatgattttttttacttttgctt
accttattacacttatataactaGTCAAGTAAAAGTAAGCGGGTAAAATG
AGTGCGAGAATTTATTAACGCGAAAGGCacggttttaatttttttttgtt
tttagctgggatctgggattctgggctgaaggtgggaattttaggattat
gtgggacctgaattttcaggtgggacctggaactcccttgcacactatgc
tcagtataaatagaactaatctaaattttggtaataaaagaatTAGTGCA
ATTATAAATTCTAATAATTTTAAGCAAATTCGAGAAATCTAATTAATCCT
CGGGCGGTTtctgttcttacgatgttcttattttccctaaATTCCAGCCT
AAACGTTCTTACAAACTGGGTTCTAAAAAAGTGTGTACTAAGTTACAATA
TTTCCGATTATAAAGAAAAGTAATGTACACTATGCGTCTTATTTGAAGAA
TCTTCCACCATTTTTCAGGTTGGCACAGAACAATGTTTATCTATCACACG
CAGCCATCCACTTGTTTCTACAAAGCAAACTTTCCGTTGAAGAAATCGAT
TCTTACTTGGACAACAACCAAGAAGAAGATGCTTCTGAAACTATCCTCGC
CGAATCTGAAGGAAAAGCTCGTTTGAATGGATACGAGGCTAGAGATTTAA
CGACCGATGGATTGAGCGACCCTGGTGATTTAGAGGATGCCATTGATAAT
AATAACAGTTACACGGAAAGTTTGGGTTCGATTCCTGTAGCGGATAAAGA
GGTTTTGAGCGATACGAATGACGGAAATAACGCAGATGACGAGCTAGATG
ATGCAGCGCCGCAGGATGATGCTGAAAGTGAGAACAATGAAGGGAATGTG
TCGGATGATGAAGAGACGTTAGTCGAGGAGTTGAACAAGTTGAGAATGTC
ATTACCAGCTCCTTTAATCGCCACATCCTCAGACACCGATCGTTTTGGAA
GTTCTTTCGAATATTCAGACGACGACCAATCGCCTTTAGAATCTTCCGGT
GAATCCGAAGGTGATTCTTCCTCCATAGACCGCAGGAGCCTCCGTAGCAA
TCCTCCACTTGCAAGAAACAGTCAAACACCTTCACGAGTCAATTCTCATG
ATAACATACGAAGTCCATCGAGGAAATCAAAAAAACGGTATTCGTCGAGG
ACAAGCAGTTTTAGAAAACTTTACAATTCAAATGCTTCATTGCCGGAATT
TTACAATCCGTCATATGGAGACGGAGTAGCAGCCGATGAACGAGAGCGAT
CATTACGAAGAAGTAAGTCAGTTTACGAGACGAGGACAAAACGGCGGAAC
CGATACAAGTCAGAGATTCTTTACACAGACGTTTCCACGAGCGATACAAG
CAAATGGAAAACACACCAAAGACACCACAGTTTGAATCGAACTCCTTCTT
CAAGGAAAGTTCGTCGATCAACTTCCTTCGCATCTTCAATCGATAGGACT
CCTGTGCGAAGGAAGATCAGCTTGAATGAATATATTATTGTAGGGCGTGA
ATCATTGGTTGACCTGAGGACCAATGAAACGTCTCGTGGAGGTGACGAAG
ACTTCAATAAAAGCTCAttgtaaaaacaaaattttccatATCCTCTTTAT
ATATACTACCGTGAGAATCACAATGAATGAATATTACACTGAAGGCTGTG
AATATATTGTAAATATTAGGATTCTATTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014184XLOC_014184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025248-exon-sc0000529-1491911889:109597..109945TCONS_00025248-exon-sc0000529-1491911889:109597..109945Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1510915933:109597..109945TCONS_00025248-exon-sc0000529-1510915933:109597..109945Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1575043694:109597..109945TCONS_00025248-exon-sc0000529-1575043694:109597..109945Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1491911889:112369..112452TCONS_00025248-exon-sc0000529-1491911889:112369..112452Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1510915933:112369..112452TCONS_00025248-exon-sc0000529-1510915933:112369..112452Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1575043694:112369..112452TCONS_00025248-exon-sc0000529-1575043694:112369..112452Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1491911889:112761..112861TCONS_00025248-exon-sc0000529-1491911889:112761..112861Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1510915933:112761..112861TCONS_00025248-exon-sc0000529-1510915933:112761..112861Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1575043694:112761..112861TCONS_00025248-exon-sc0000529-1575043694:112761..112861Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1491911889:113312..113410TCONS_00025248-exon-sc0000529-1491911889:113312..113410Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1510915933:113312..113410TCONS_00025248-exon-sc0000529-1510915933:113312..113410Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1575043694:113312..113410TCONS_00025248-exon-sc0000529-1575043694:113312..113410Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1491911889:114465..115678TCONS_00025248-exon-sc0000529-1491911889:114465..115678Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1510915933:114465..115678TCONS_00025248-exon-sc0000529-1510915933:114465..115678Clytia hemisphaericaexon
TCONS_00025248-exon-sc0000529-1575043694:114465..115678TCONS_00025248-exon-sc0000529-1575043694:114465..115678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:109597..115678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0302843	0.147142	0.14719	0	0	0.292386	0.547457	0.574931	0.84857	1.15204	0.454384	7.15253	8.45095	0.322843	0.116306	0	0	6.08468	3.53044	0	0	0	0.135461	0	0	0	0	0.239822	0.318408
Blast
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BLAST of TCONS_00025248 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 5.757e-23
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 2 
Query:  347 QFVQISVRNARTHLNDGKAQFTDFEIELKTNHIAFTLKSSKVRRRYSDFVWLRNRLSKDTIDSNSLPSLPGRRLFGRFNKDFIKQRQKKLQEFLFGLAQNNVYLSHAAIHLFLQSKLSVEEIDSYLDNNQEEDASETIL 763
            + + + V++ R         + D++I L TN  AFT K+S VRRRY +FVWLR +L ++      +P LPG+  F   + +FI++R++ LQ FL  + Q+ V LS + +HLFLQS+LSV EI++ +        S+ IL
Sbjct:   15 EVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNA-GLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAIL 152
The following BLAST results are available for this feature:
BLAST of TCONS_00025248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX115.757e-2338.13Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=... [more]
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