TCONS_00025247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025247
Unique NameTCONS_00025247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025247 ID=TCONS_00025247|Name=TCONS_00025247|organism=Clytia hemisphaerica|type=transcript|length=1535bp
GCTGCCCAAAGACACCATTAAATTATCAGCTACAGAGTTCGTTCAAATTT
CGGTACGCAATGCAAGAACACATTTGAATGATGGAAAGGCACAATTTACT
GATTTCGAAATCGAATTAAAGACCAATCACATCGCATTCACATTGAAGAG
CTCGAAAGTTCGAAGAAGATATTCAGACTTTGTATGGCTGAGGAACAGGC
TGTCAAAGGATACAATCGACTCAAATTCATTACCGTCACTACCAGGAAGA
AGGTTGTTTGGTCGTTTCAACAAAGATTTCATCAAACAAAGACAGAAGAA
ATTACAAGAATTCCTGTTcggGTTGGCACAGAACAATGTTTATCTATCAC
ACGCAGCCATCCACTTGTTTCTACAAAGCAAACTTTCCGTTGAAGAAATC
GATTCTTACTTGGACAACAACCAAGAAGAAGATGCTTCTGAAACTATCCT
CGCCGAATCTGAAGGAAAAGCTCGTTTGAATGGATACGAGGCTAGAGATT
TAACGACCGATGGATTGAGCGACCCTGGTGATTTAGAGGATGCCATTGAT
AATAATAACAGTTACACGGAAAGTTTGGGTTCGATTCCTGTAGCGGATAA
AGAGGTTTTGAGCGATACGAATGACGGAAATAACGCAGATGACGAGCTAG
ATGATGCAGCGCCGCAGGATGATGCTGAAAGTGAGAACAATGAAGGGAAT
GTGTCGGATGATGAAGAGACGTTAGTCGAGGAGTTGAACAAGTTGAGAAT
GTCATTACCAGCTCCTTTAATCGCCACATCCTCAGACACCGATCGTTTTG
GAAGTTCTTTCGAATATTCAGACGACGACCAATCGCCTTTAGAATCTTCC
GGTGAATCCGAAGGTGATTCTTCCTCCATAGACCGCAGGAGCCTCCGTAG
CAATCCTCCACTTGCAAGAAACAGTCAAACACCTTCACGAGTCAATTCTC
ATGATAACATACGAAGTCCATCGAGGAAATCAAAAAAACGGTATTCGTCG
AGGACAAGCAGTTTTAGAAAACTTTACAATTCAAATGCTTCATTGCCGGA
ATTTTACAATCCGTCATATGGAGACGGAGTAGCAGCCGATGAACGAGAGC
GATCATTACGAAGAAGTAAGTCAGTTTACGAGACGAGGACAAAACGGCGG
AACCGATACAAGTCAGAGATTCTTTACACAGACGTTTCCACGAGCGATAC
AAGCAAATGGAAAACACACCAAAGACACCACAGTTTGAATCGAACTCCTT
CTTCAAGGAAAGTTCGTCGATCAACTTCCTTCGCATCTTCAATCGATAGG
ACTCCTGTGCGAAGGAAGATCAGCTTGAATGAATATATTATTGTAGGGCG
TGAATCATTGGTTGACCTGAGGACCAATGAAACGTCTCGTGGAGGTGACG
AAGACTTCAATAAAAGCTCAttgtaaaaacaaaattttccatATCCTCTT
TATATATACTACCGTGAGAATCACAATGAATGAATATTACACTGAAGGCT
GTGAATATATTGTAAATATTAGGATTCTATTCGAC
Run BLAST on NCBI

transcript from alignment at sc0000529:105935..115678+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025247 ID=TCONS_00025247|Name=TCONS_00025247|organism=Clytia hemisphaerica|type=transcript|length=9744bp|location=Sequence derived from alignment at sc0000529:105935..115678+ (Clytia hemisphaerica)
GCTGCCCAAAGACACCATTAAATTATCAGCTACAGAGGTAAGTTTgcaga
agcagccggcgaaggaattttttagaaatatgtgttcttatcttctagga
gatcaaatgttatgacctttcagcaatttttcatacaaatgatgtgttct
tatttctaggaaacctttatccgcactatttgtctccctaaacttattac
ttctttatggtttgatgtgttctaaaatctaggaaaaacagtttgccaag
acaaacttgtaagatatttgtttttctctacgaaagatgtgttctaaaaa
tttccagggttactaggcaacaagattacatcaatttttgcTTTATTATA
CCCgtctccttaaaagatgtgttctgaagctttctagggttacctagccA
ACAAGAACCCGtagatgaccttgattataccccNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat
gctagaattttgaccattttttgcacgaaagggatcgaaaatttggggga
aaatgcactctaagggtatgattttcactgatttttgctgcactgtaatt
GCTGCACTGtagtgcaattttaaaagccaatttttggcccgcacataccg
tcagtccgcaaacccagtgccccccccgggattaTACCCCTGTttcgtca
gaacacatcatcatttctagacatttctagctgattaattttcgaagatt
tgatcagaacagatcaaaatttctagctgaaatatgctcttagaacacat
cggaaaaaaaggtcgcctcgccggctgctttcgagTTTGTATTAAAATCG
AGATTGTAACATGGCATGGTTCGACCCTGCACTTTCGCTTATAATTTCTA
AGAGAGGACACAAGTCCCATCCTGTTGTAATAATAATTAGTGCACCGCTA
AATCAGGGAAATGGTAAATATAGGTTATTTAGAGAGTTGGGGATTTTTAA
ATTGTAATGTTTAGGGCCCAAAACATTTTCCAGTGGATAAAAGGTGCCAC
CAGGTCACACGGTATATTTATTGAGAAATTACTACAAAATGCTGGTAAAG
AACGTTCAACCAGAGTGAGAATAAGAGAGTACAGTGTGCAACATGGATTT
TCCAACATTTGTCGAAGAGGACGTAGAAAACATAAAGTTACTCAAAATTT
AAGAGGGCGTTCAGGTTTGATGGTGTGATAGTATTagcccttttttctgt
cggtgcTTCGGTGTTGGCTAGGGTATATCTTGCTTAATTGAGTCTACAGT
AATCTAAATTTCAAACGAGAATCTTACAATATCGATTTCAAAGTGTCGAC
ATTCGACAGTTTCTAGTTACTAAAGTGTGGCACCTCGATACAGGAGAGGG
GAGGAGCTAAAATACAAACTCGACACCGTTCTGGAAATGTGAGGAAGGAA
TCGGGAAACCTTATTTTCTGCCTCACATTGATGGCCCATCCATGACACGT
TTGGTTAAACAACAAGATAATCCGCAATGTAAACAAATCTTTATTCCGTA
AGAAAATAAGGATGTAATTACATGATAAACCTTTCCTTCGCTAGGGCATG
TTTCCAACGAACTATTATACATACATAGGACTAgattgtgcaaagtttca
gaTCAGCGAAAACAAAATAAACTTTTCGTCCATCCGTTTTTAGGAACTCA
AAGCTCACTATACAGAACGCAGTCTGGTCAATGTTGTAGCACATTACTCT
ATAAGTGAAGCTAGAAAACACCCCTGTATTTTGCCTGTATCAAAGCTAAC
CAATGTTAGTTCACAAATACCCCTGTCTTAAATAGAATAGGTACGCTAAG
ATTTCGAGTTATGAACAGGCGAGGAGGGACAAAGAGAGATGAACTCAACA
TGGATAGGGaaatcaatttgaaaacttATTAAACTCCGTAAACAGAGGCC
TCTGNGATaggaaaatcaatttgaaaacttATTAAACTCCGTAAACAGAG
GCCTCTGTCAGAAAATCTAACCCGTTCTTAATACTTGGATTAAGGGGTAA
GCTGCGGTCTTCTTTTGATTAAGGCTTGATTCATAAACAACCCTTATGTG
GCCTACGgtttaaaaacaataacaaaaagcTATCAATTATCCACTTTTTG
AGTCGCCTTCACCTTCAGAAAGTTGTAGTAAGTACACAGGATTAATGATT
GAGACGTCACCTTTCAACAGATTGTTTTTCATCAATGGCCTTTTACTATG
AAAGGTATATCCCGCGGTGTCCGTGGATAATGATGACTCCATGAAGAGGC
CACGTGGACGCAATGTACTCGAGAATTTTTTACAGAGCTACAGACTCAAT
ACAGGTCGAGATCCTTAATGAATAGTAGTGCTTATGAAATCATTAGGTTG
GTTGCGCAAGTCTACTCCCTTCGATTTGACCACAAGACTGATTACTATCT
CTGATTAGTTGTCTATGTACATTATGTATGACAAACttatgtaatttatg
caatttCTTGTATGAACAGGCAGATAGTAAATAACATCCCTTTAtgataa
aaagatgaaaaattccattttgtttattttggtaaGGAAAATAGAATTTG
AAAGAATGCTTGTTGTTGACGTCCAGACGTTTGTCACGTACAGCGAGTAA
AGAATTCAAACATCCAGCTCAAGTTTCATGTCAACTGTTGACTTATCTCT
ATACAAAGAcactgattggttgaaagtaacgtCATTGTTTCAAGCAACCA
ATCAGGGAGAGTTTTGTAAATAATGTTTAAGCGGTTGAGAGCATTTTTGG
AGAATGAGGCCATGAGGATGAGCCATCAAATTGGAAAGAGGCTCAgtaaa
aatttcatgtttcggctttttgttgtttcttatgAAAATAGAATCGGATC
AAAATCAACTGAGTTGAGGgttgttttatcaaaatgtttCGATTCATTAA
TCCTCTCCCTCTCTCTCACCTATACATCACAACCtcacaaaattcgcgaa
aaacGTTGGGGACTTATGTGAATGAGAGACTTTCTATTAAGCTGACTGAT
GACGAGACTTCTTGAAGACCAGTTTGAGTTAAAACATGTTTCATTGACGA
TAATTTTTTACAACTTGTTATCTATGAGGGTAGAGACAAAGTCAAAGTTT
TGGACGATTAACCATTTTGCTAATTAGTGAAAGAAACCCTAAATTGGGGT
AAAAAGAACTCGAGTGACAATACACGAAATTTTGTACTGAAGaataaggc
ttgaaaaattttACAGGAGAAACTTCTTTTGATTTGCTTGCATAACTGAT
GCGGAACAATGGAATGGATAAAATAACTTCACCGGATATCCGATCACTTG
GTGGAAACCAGGTAATAGTTGGGTTCATTTCaactgaccaatcagaagct
gaGAACACTCTGATAGTTCTATGATGGGGATGAAtgctttttcattaaaa
ataagttaattCTTGGGTTAGTCCTGGCTGTTCTTGTTTTTCGGTGATTT
TCAGGGTACTTATTGTCCTCACATGCATTCACATTTAAGGCGTTTGGCAG
CTATTTATGAAATCTGCACGACTTGGATTTTTCTTAACAGTTTTGGGCAG
AGTCTTTTTTCTAATACAAATGGGTGCACGGAAATAGACCGGTCTGATAA
TACAATGTCATTAAAATTAAGTATCCTTTCAATCTGCATAAAACATTATT
TTAGCAAATAACCGAAAACTTAAATTCATATTATTCTCTTAAGTGCCAGA
TCGAATTTTAGTATGACTGTGAATCAATTTCCAAATCTAACGAGCGATCA
CGAAGCACTTGTTCCCATTATCTTATCATCAGTTGTCGAAAACTTTCGTC
CGAGAACTATGACTGTGCATGACACAAGTGAAACAAAACGTGGGAAAATA
TAATCATGTATGTCTGTTTCTGTCTGTAAACATCTCGCTCAGAAAAAGTT
GTTCAGCAAGTAGATCATCTGTTGTTCGCGTTCATATGAGAGAGGTAGTC
CTTCCGATGAATGGAACAAGCCCTGTCTAGGACAGCATCCCCTGTATTGC
GATAGGGAAACCACTGCGCTTACCTGACCCTGCAAATACGTACATACGAC
ACAGAGCTGCTGGCGCATACCAACTATACCCGAACGACTCGTGAGGACAG
TGGTCGAACCTAACAAGTATTAACAACCACGCCAGAGTCAGACATATCTC
CCCACACGTTTGTATTAGAATATTTTACTGATTAATGTACACAACACTGA
GCAGGAGCAAAACCCGAACTCCTATACGAAATTCAAGACTGTATCCATTA
CACAACTGCGCCATCGGGTTAGTTTACGCTTTACGAAAAAACTTGACAAA
GTATTCAATCTTCAGAATACAAGGATATATtcatcaaaatatataaacaa
aacttttagCTCACTTTAAGTCCATTGTGCTTTTCTGGTAGAATAGGGGG
CAATAAAAAACTCAAGCACAAACGTGAACATAGCAATTGGGGCCCAGGGT
CCATTCTGTAGTTACGCAATCTCAATGAATGAATGGAAATGTTTTGAGAC
TTAAAACAAGAGAGTTAATGGGCTNTTCTGTAGTTACGCAATCTCAATGA
ATGAATGGAAATGTTTTGAGACTTAAAAAGAGAGAGTTAATGGGCTGGCG
GTCTTCTTTATGACATCAGCAAGACTAAGTTCTAACGTGTAGGTGATCGA
TTAAAATTAAGATTTCAAAGATATTTAGATGGAAGGTTTTAATGAAATCA
TCCTACATGATCTAACATGATTCGATAAGTGTTCAGACACCAACCAATTA
ATTAGAGCGATATCTTTTACTTTCCTTCTTCACGAAATATCggagttttt
aaaaaattgcctGAAATCACATGATTTTACAGGACAGTCAATACATAAGC
TCGCCAGTAACTTCGGCGTGGAAGAGAGGTGACCATAACAAGTTAAAAAG
GGTCCTTCCTTAAATAATAAATGTGGATGAATTGTTTGCCATTCTGATGA
ACCTTCAATCTCTCTTTGATCGACTTCTTGAAATTTGGTGATTTGAGGAC
CCTATTAGATTGTCAAaggttgaaaaaagattttatacCCATCCCTCTGC
GCCTTATTCGAGTATCTTATTCAAACCGTCGATCATCgaatttctttatt
cattagGCCGTGAAACGTCACGCAAACCAAAAGATAATTAACAAAGAGTA
GCAAACCATggacaaaaaaactttattacCAGTTTTTGCCATTCTTCTAA
AAAGTTTGTTGTTTCGCATTGAGGCGAAAACAAGAAAAAGGGGACAGTTT
TTTCGACGCAATAATGCGAAAACTAATATTAACATACGAATGTTGATTAA
TTTccatacaaaaaaaacaatttcttgaaatgttttttgttgtatttgtt
tgcGACGGTTGAGAAAGGCTGTCTACTCTACTATGaataaaattacttta
aaaatacaaaaaatgaagCTTTAAGAAATTAGCATTGCGTCTCGCTCGCT
TGCTTGTGTAGAGTGAAATGATGAAAACTTGAGAGGGAAGTTGTGTTTTG
TGAGAGAAAGGAATGCTGCGCCAGAAACGAAAGAAAAGATGTACTTTCAA
AGATGAGACGGTACTTTGAACTCATACTTGAatgagtttttttgtttgtt
acaTAAAATAATGTTGGTAAAATCCCCTTGTAACAAAACTGCCCTGAAAA
TAACcttattttagaattttgacTGCTTCTTTTGTAATGTAATTTTCGAC
CCTGATTGTGACCCAGTCTCTCTTATACTTTCAGTTCGTTCAAATTTCGG
TACGCAATGCAAGAACACATTTGAATGATGGAAAGGCACAATTTACTGAT
TTCGAAATCGAATTAAAGGTATTTATAATAACATCTTCTGATTGGCTTGA
taaaatggttttaattacCCTTGACTATTCATTTAATCCAAAATACCAGA
TATCATTTAAAAGTCTATTCAACTTTTAGGATTCTTAAGTCGAATACGAT
ACGTCTCAAGATTGACGTCATTTACTGATACTAGGCAACATTAATAACAA
ACCAGACCTTCTTCGTCAGAAGCTGACATACAGTGAATGCGTTAAATGGT
GCCTTTTACTTCATTCACCTCAATTACCTTATTTTAGACCAATCCCCTTT
ATTCACCCCAATCAACTCTTTTTTAGACCAATCACATCGCATTCACATTG
AAGAGCTCGAAAGTTCGAAGAAGATATTCAGACTTTGTATGGCTGAGGAA
CAGGCTGTCAAAGGATACAATCGACTCGTAAGTCATCTATTGTCAAACTC
ACCCATCCCTCTGTTTCTCAGAGAGTCAACTATGTACATTTCGTTGATAT
TCTCCCGAAAAGCATTGGGAATAAGAGGAGTGAAGAAGTGATGAGCATCT
GAAGTGATAATTTTAAAGGGAGACATACCTGTCAAACGATCCCTATTTTG
TTTCTGTTCATATAATGCGGCTTTGCCATTCATGTCTAGTGTACTTCGGA
CCATCTCCAATCAgctctgtaaaaataaaaggaagaagtTGCAATGTCAA
GGAGAACAACTACCTTCTTTGCTTGATAGTTCTTATGTCGTTTGGATCAA
TAAATTGTAACGGGGCTAAATACTTAGTGTAATATTTTACGTTTTTGGTA
AAAGCCACAATATCAAGAGTTGCATTTTTTAATCCATTTTAATTGTCTCG
TTAACATAATTAGAATTCTTTGTTTAGAAATTCATTACCGTCACTACCAG
GAAGAAGGTTGTTTGGTCGTTTCAACAAAGATTTCATCAAACAAAGACAG
AAGAAATTACAAGAATTCCTGTTcgggtaatttttcttctttttcatatt
tataCGTTTAGAAGATCGCCTTGTCTTGTTTCGAAGTGCTTTTCTTTACA
gaacttccttttataaaaattggacCTCATGTCAAATCTGCTCTaatagt
tccatttatactgagacaGAAAAATCGTCTAAgacgagtagtttgtaaaa
tgtgatctgtggaggagttcctatttattgaaacatgaatggaaagtaca
ctcctccataatgttttctaaattgctcgtctcagacaaattaatcgtct
cagCATAGTGTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggcccccccccccccccc
gggggggatGGTGagagttaatttctttaggtgggactttgggtgttttg
gaaaaagttaaagtaaaatttcttattttcagattttattatatattttt
tctatatatttcataaataatTGTTTACCATGgtaaacttttctttttat
tattacaGGTCATTTGATGTttgaataaatatctttaagaatgatttttt
ttacttttgcttaccttattacacttatataactaGTCAAGTAAAAGTAA
GCGGGTAAAATGAGTGCGAGAATTTATTAACGCGAAAGGCacggttttaa
tttttttttgtttttagctgggatctgggattctgggctgaaggtgggaa
ttttaggattatgtgggacctgaattttcaggtgggacctggaactccct
tgcacactatgctcagtataaatagaactaatctaaattttggtaataaa
agaatTAGTGCAATTATAAATTCTAATAATTTTAAGCAAATTCGAGAAAT
CTAATTAATCCTCGGGCGGTTtctgttcttacgatgttcttattttccct
aaATTCCAGCCTAAACGTTCTTACAAACTGGGTTCTAAAAAAGTGTGTAC
TAAGTTACAATATTTCCGATTATAAAGAAAAGTAATGTACACTATGCGTC
TTATTTGAAGAATCTTCCACCATTTTTCAGGTTGGCACAGAACAATGTTT
ATCTATCACACGCAGCCATCCACTTGTTTCTACAAAGCAAACTTTCCGTT
GAAGAAATCGATTCTTACTTGGACAACAACCAAGAAGAAGATGCTTCTGA
AACTATCCTCGCCGAATCTGAAGGAAAAGCTCGTTTGAATGGATACGAGG
CTAGAGATTTAACGACCGATGGATTGAGCGACCCTGGTGATTTAGAGGAT
GCCATTGATAATAATAACAGTTACACGGAAAGTTTGGGTTCGATTCCTGT
AGCGGATAAAGAGGTTTTGAGCGATACGAATGACGGAAATAACGCAGATG
ACGAGCTAGATGATGCAGCGCCGCAGGATGATGCTGAAAGTGAGAACAAT
GAAGGGAATGTGTCGGATGATGAAGAGACGTTAGTCGAGGAGTTGAACAA
GTTGAGAATGTCATTACCAGCTCCTTTAATCGCCACATCCTCAGACACCG
ATCGTTTTGGAAGTTCTTTCGAATATTCAGACGACGACCAATCGCCTTTA
GAATCTTCCGGTGAATCCGAAGGTGATTCTTCCTCCATAGACCGCAGGAG
CCTCCGTAGCAATCCTCCACTTGCAAGAAACAGTCAAACACCTTCACGAG
TCAATTCTCATGATAACATACGAAGTCCATCGAGGAAATCAAAAAAACGG
TATTCGTCGAGGACAAGCAGTTTTAGAAAACTTTACAATTCAAATGCTTC
ATTGCCGGAATTTTACAATCCGTCATATGGAGACGGAGTAGCAGCCGATG
AACGAGAGCGATCATTACGAAGAAGTAAGTCAGTTTACGAGACGAGGACA
AAACGGCGGAACCGATACAAGTCAGAGATTCTTTACACAGACGTTTCCAC
GAGCGATACAAGCAAATGGAAAACACACCAAAGACACCACAGTTTGAATC
GAACTCCTTCTTCAAGGAAAGTTCGTCGATCAACTTCCTTCGCATCTTCA
ATCGATAGGACTCCTGTGCGAAGGAAGATCAGCTTGAATGAATATATTAT
TGTAGGGCGTGAATCATTGGTTGACCTGAGGACCAATGAAACGTCTCGTG
GAGGTGACGAAGACTTCAATAAAAGCTCAttgtaaaaacaaaattttcca
tATCCTCTTTATATATACTACCGTGAGAATCACAATGAATGAATATTACA
CTGAAGGCTGTGAATATATTGTAAATATTAGGATTCTATTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014184XLOC_014184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025247-exon-sc0000529-1491911889:105935..105971TCONS_00025247-exon-sc0000529-1491911889:105935..105971Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1510915933:105935..105971TCONS_00025247-exon-sc0000529-1510915933:105935..105971Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1575043694:105935..105971TCONS_00025247-exon-sc0000529-1575043694:105935..105971Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1491911889:112369..112452TCONS_00025247-exon-sc0000529-1491911889:112369..112452Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1510915933:112369..112452TCONS_00025247-exon-sc0000529-1510915933:112369..112452Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1575043694:112369..112452TCONS_00025247-exon-sc0000529-1575043694:112369..112452Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1491911889:112761..112861TCONS_00025247-exon-sc0000529-1491911889:112761..112861Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1510915933:112761..112861TCONS_00025247-exon-sc0000529-1510915933:112761..112861Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1575043694:112761..112861TCONS_00025247-exon-sc0000529-1575043694:112761..112861Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1491911889:113312..113410TCONS_00025247-exon-sc0000529-1491911889:113312..113410Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1510915933:113312..113410TCONS_00025247-exon-sc0000529-1510915933:113312..113410Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1575043694:113312..113410TCONS_00025247-exon-sc0000529-1575043694:113312..113410Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1491911889:114465..115678TCONS_00025247-exon-sc0000529-1491911889:114465..115678Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1510915933:114465..115678TCONS_00025247-exon-sc0000529-1510915933:114465..115678Clytia hemisphaericaexon
TCONS_00025247-exon-sc0000529-1575043694:114465..115678TCONS_00025247-exon-sc0000529-1575043694:114465..115678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:105935..115678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0802664	0	0	0	0	0	0.498776	0.450847	0.574931	1.17448	0.691223	0.507841	8.91185	7.75054	0.846989	0.361752	0.261108	0.276916	3.02063	9.06215	0.168055	0	0.0613546	0	0.229809	0.512748	0	0.11746	0.143209	0
Blast
[Close]
BLAST of TCONS_00025247 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.228e-24
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 2 
Query:   35 EFVQISVRNARTHLNDGKAQFTDFEIELKTNHIAFTLKSSKVRRRYSDFVWLRNRLSKDTIDSNSLPSLPGRRLFGRFNKDFIKQRQKKLQEFLFGLAQNNVYLSHAAIHLFLQSKLSVEEIDSYLDNNQEEDASETIL 451
            E + + V++ R         + D++I L TN  AFT K+S VRRRY +FVWLR +L ++      +P LPG+  F   + +FI++R++ LQ FL  + Q+ V LS + +HLFLQS+LSV EI++ +        S+ IL
Sbjct:   15 EVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNA-GLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAIL 152
The following BLAST results are available for this feature:
BLAST of TCONS_00025247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX119.228e-2438.85Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=... [more]
back to top