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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025245 ID=TCONS_00025245|Name=TCONS_00025245|organism=Clytia hemisphaerica|type=transcript|length=2494bp
NNATAGGATTCAAATGCTAAGGCTTGCTGACAGGGAAGGATGGACGGTGG
TGAAACTTTGTGGACAAAATCTGTTGACAAAATCTGTTGCTTTCGAATGg
ggaaatgaaagaaaaacatttgaaagagGCCAGAAAATCTGCCGaaagaa
taaaacaaaacaTAGAGATTGAACAGAGAAAGATAAACTCGTCATCTTGT
TTTTAATGATGTTGCGTGCTACAATTGCAAAAAGTTGGACATTATTCGAC
ATTTTGTGCAAAAGGAACAGCCACAAGTCCTGAATTGTCAAAAAGTTCAT
CAACAACAACGGGTTCTAGCAAACACAGCTCATCAAATTCGtatcatcaa
aatcaaaaagcaGAAGAAATTAGTGATTAACTGAACATAATAAACATAAA
CGAAACATTGtgtttttatattctttctAATTGCTTTCGACGGTTGAGTT
ATCAATAACATCGCGAAtaacattattttctttcttaCATGGATCCCAAG
GGAAGAGAACAAATCGGCTGACATCAGTTCAAAATCTATAGATACCGATA
ATTGGTTCATCGACATTAAGATTTTCCTATAATTTCACATTTCGGGTCGA
TTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAACAAACTCATC
TACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGATAAACTTAATT
GGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAAACATCTGAAA
AACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGCAATCTGCTTA
TTTTTGGTTGATATTTAGACATTTTTTTCAATGCTTTCTGTCcctgttta
tattttttttactctACTGAACAACTATTGGAAATGcttatttttttgtt
gtgtaCTTGACACTAGAGGCGAgaacatagtttgttcttttttcgaTCCA
GGTTTTTTATGATGTAATCTTGTAAtttgttttctcattttcatgTGTAA
AAATTGAGAACAACCGAATCATGGTATCGATGCTATATTTGCTGGTACCG
ACATTATTATCAATTTGTGGTTATCGTGCTCTGTTGCAGATATCAGTGTT
TTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCG
TTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAATACCTTTTTAAA
GATATCGTTTGCGTGAATGCAGATATCGATTGACGATTATTATGGTATCG
CTGCTCTGTTGCATATGCCAATTTTAGAGGTATGaaagttttcttatatt
tttacattttgtcGTATTATCCGGCGGAAGTTACGCATCCCCTTCGAGCA
AAGGATAGAAGCAATAAAAGATCAGAAACTATGATAAGTTCCAATGGAAA
GGAATTCAAGCcattgtcaatcattttcttgtGTTCTTATTTTATTAACA
GTTCTAACATTAGTTGTAATTTTTTATGGTTTTCGCTAATTCTTACTCGT
TAGCGCTACATCACACCCGAAGAcgaataaaacattttttcaatgcaTAC
TGCCCGTTTATAATTTTCTACTCTACTGAACAACTATTGGAAATGcttat
ttttttgttgtgtaATTGGCACGAAGGCAAGAacatgtttgatttttttt
tgatccaagtttttcatgatgcaatcttgtaatttgttttctcattttca
tgTGTAAAAATTGAGGACAACCGAATCATGGTATCGATGCTATATTTGCT
GGTACCGACATTATTATCAATTTGTGGTTATCGTGCTCTGTTGCAGATAT
CAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGAA
TGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTTGCAATACTTTTTTA
AAGATATCGTTTGCGTGAATGCAGATATCGATTGGCGATTATTATGGTAT
CACTGCTCTGTTGCATATGCCACTTCCAGAGGTATGAGAGTTTTCTTACA
TtatttgttttatcattttattcGGAGGAGATTACGCATCCCTTCTCGAG
CAAAGGATAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAGTAAAATC
GAAAAGAGCCTATTACATCTGAGTTATTGTTGATCGTTACACCACTTCGG
ACAACCATATTATATATATCCTACACAACTGCAAGGGAGTCTTTTGAAGA
GCATTTATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtcattggat
tggtcgttaactattcagACAAAGCTTTTATTACatgttttctaaagaac
gcatcatctttattgttttgaataactaattatgTAAACATCATATAAAA
ACCTCAACCCAATTGCATTATCATCAAGAACAGTCATTCtaacagtttca
aaattttccaaccgATTAGGAATataaacaaagaattttttgcatccata
ccttttctttttttcccctCGTGTTTTTCATTGCAAGATGTATN Run BLAST on NCBI transcript from alignment at sc0000529:27421..29914+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025245 ID=TCONS_00025245|Name=TCONS_00025245|organism=Clytia hemisphaerica|type=transcript|length=2494bp|location=Sequence derived from alignment at sc0000529:27421..29914+ (Clytia hemisphaerica)
NNATAGGATTCAAATGCTAAGGCTTGCTGACAGGGAAGGATGGACGGTGG
TGAAACTTTGTGGACAAAATCTGTTGACAAAATCTGTTGCTTTCGAATGg
ggaaatgaaagaaaaacatttgaaagagGCCAGAAAATCTGCCGaaagaa
taaaacaaaacaTAGAGATTGAACAGAGAAAGATAAACTCGTCATCTTGT
TTTTAATGATGTTGCGTGCTACAATTGCAAAAAGTTGGACATTATTCGAC
ATTTTGTGCAAAAGGAACAGCCACAAGTCCTGAATTGTCAAAAAGTTCAT
CAACAACAACGGGTTCTAGCAAACACAGCTCATCAAATTCGtatcatcaa
aatcaaaaagcaGAAGAAATTAGTGATTAACTGAACATAATAAACATAAA
CGAAACATTGtgtttttatattctttctAATTGCTTTCGACGGTTGAGTT
ATCAATAACATCGCGAAtaacattattttctttcttaCATGGATCCCAAG
GGAAGAGAACAAATCGGCTGACATCAGTTCAAAATCTATAGATACCGATA
ATTGGTTCATCGACATTAAGATTTTCCTATAATTTCACATTTCGGGTCGA
TTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAACAAACTCATC
TACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGATAAACTTAATT
GGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAAACATCTGAAA
AACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGCAATCTGCTTA
TTTTTGGTTGATATTTAGACATTTTTTTCAATGCTTTCTGTCcctgttta
tattttttttactctACTGAACAACTATTGGAAATGcttatttttttgtt
gtgtaCTTGACACTAGAGGCGAgaacatagtttgttcttttttcgaTCCA
GGTTTTTTATGATGTAATCTTGTAAtttgttttctcattttcatgTGTAA
AAATTGAGAACAACCGAATCATGGTATCGATGCTATATTTGCTGGTACCG
ACATTATTATCAATTTGTGGTTATCGTGCTCTGTTGCAGATATCAGTGTT
TTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCG
TTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAATACCTTTTTAAA
GATATCGTTTGCGTGAATGCAGATATCGATTGACGATTATTATGGTATCG
CTGCTCTGTTGCATATGCCAATTTTAGAGGTATGaaagttttcttatatt
tttacattttgtcGTATTATCCGGCGGAAGTTACGCATCCCCTTCGAGCA
AAGGATAGAAGCAATAAAAGATCAGAAACTATGATAAGTTCCAATGGAAA
GGAATTCAAGCcattgtcaatcattttcttgtGTTCTTATTTTATTAACA
GTTCTAACATTAGTTGTAATTTTTTATGGTTTTCGCTAATTCTTACTCGT
TAGCGCTACATCACACCCGAAGAcgaataaaacattttttcaatgcaTAC
TGCCCGTTTATAATTTTCTACTCTACTGAACAACTATTGGAAATGcttat
ttttttgttgtgtaATTGGCACGAAGGCAAGAacatgtttgatttttttt
tgatccaagtttttcatgatgcaatcttgtaatttgttttctcattttca
tgTGTAAAAATTGAGGACAACCGAATCATGGTATCGATGCTATATTTGCT
GGTACCGACATTATTATCAATTTGTGGTTATCGTGCTCTGTTGCAGATAT
CAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGAA
TGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTTGCAATACTTTTTTA
AAGATATCGTTTGCGTGAATGCAGATATCGATTGGCGATTATTATGGTAT
CACTGCTCTGTTGCATATGCCACTTCCAGAGGTATGAGAGTTTTCTTACA
TtatttgttttatcattttattcGGAGGAGATTACGCATCCCTTCTCGAG
CAAAGGATAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAGTAAAATC
GAAAAGAGCCTATTACATCTGAGTTATTGTTGATCGTTACACCACTTCGG
ACAACCATATTATATATATCCTACACAACTGCAAGGGAGTCTTTTGAAGA
GCATTTATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtcattggat
tggtcgttaactattcagACAAAGCTTTTATTACatgttttctaaagaac
gcatcatctttattgttttgaataactaattatgTAAACATCATATAAAA
ACCTCAACCCAATTGCATTATCATCAAGAACAGTCATTCtaacagtttca
aaattttccaaccgATTAGGAATataaacaaagaattttttgcatccata
ccttttctttttttcccctCGTGTTTTTCATTGCAAGATGTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025245-exon-sc0000529-1491911889:27421..29914 | TCONS_00025245-exon-sc0000529-1491911889:27421..29914 | Clytia hemisphaerica | exon |
| TCONS_00025245-exon-sc0000529-1510915933:27421..29914 | TCONS_00025245-exon-sc0000529-1510915933:27421..29914 | Clytia hemisphaerica | exon |
| TCONS_00025245-exon-sc0000529-1575043694:27421..29914 | TCONS_00025245-exon-sc0000529-1575043694:27421..29914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000529 | supercontig | sc0000529:27421..29914 + |
Blast
The following BLAST results are available for this feature:
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