TCONS_00025240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025240
Unique NameTCONS_00025240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025240 ID=TCONS_00025240|Name=TCONS_00025240|organism=Clytia hemisphaerica|type=transcript|length=446bp
CACAGATTTTAGCCATCAGGCGTATTTTGGAAGAAATGCGAAAACTTAAC
AAAGATGCTTTTATTTGCtttgttgactttaaaaaagcctttgatTCCAT
ATCCCGtgtaaaaatgtttgaaattcttAAATTGTACGGCATTCCAGAGA
AACTGATTTCAGCCATCAGGGCACTCTACGTGTCCACCAAAGCAAAGGTC
ATTACAGCTGACGGAGACACTGATATTTTTGACATTCATGCTGGAGTTCT
ACAAGGTGACACCTTAGCtccctttctttttatcattgttttagattctg
ttttaagaatttctgtTGACTTATCTAATGACaagggaataaaaataaaa
gttccCCTGCGCAAGCGTAACCGCGGCCTTTTTCTGACCGATCTTGACTT
TGCTGACGATCTTGCCTTAGTTTCTGAGAgtattcaaaatcttgaa
Run BLAST on NCBI

protein sequence of TCONS_00025240-protein

>TCONS_00025240-protein ID=TCONS_00025240-protein|Name=TCONS_00025240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
QILAIRRILEEMRKLNKDAFICFVDFKKAFDSISRVKMFEILKLYGIPEK
LISAIRALYVSTKAKVITADGDTDIFDIHAGVLQGDTLAPFLFIIVLDSV
LRISVDLSNDKGIKIKVPLRKRNRGLFLTDLDFADDLALVSESIQNLE
Run BLAST on NCBI

transcript from alignment at sc0000527:155590..156035

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025240 ID=TCONS_00025240|Name=TCONS_00025240|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0000527:155590..156035 (Clytia hemisphaerica)
ttcaagattttgaatacTCTCAGAAACTAAGGCAAGATCGTCAGCAAAGT
CAAGATCGGTCAGAAAAAGGCCGCGGTTACGCTTGCGCAGGggaactttt
atttttattcccttGTCATTAGATAAGTCAacagaaattcttaaaacaga
atctaaaacaatgataaaaagaaagggaGCTAAGGTGTCACCTTGTAGAA
CTCCAGCATGAATGTCAAAAATATCAGTGTCTCCGTCAGCTGTAATGACC
TTTGCTTTGGTGGACACGTAGAGTGCCCTGATGGCTGAAATCAGTTTCTC
TGGAATGCCGTACAATTTaagaatttcaaacatttttacaCGGGATATGG
AatcaaaggcttttttaaagtcaacaaaGCAAATAAAAGCATCTTTGTTA
AGTTTTCGCATTTCTTCCAAAATACGCCTGATGGCTAAAATCTGTG

Coding sequence (CDS) from alignment at sc0000527:155590..156035

>TCONS_00025240 ID=TCONS_00025240|Name=TCONS_00025240|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000527:155590..156035 (Clytia hemisphaerica)
ttcaagattttgaatacTCTCAGAAACTAAGGCAAGATCGTCAGCAAAGT
CAAGATCGGTCAGAAAAAGGCCGCGGTTACGCTTGCGCAGGggaactttt
atttttattcccttGTCATTAGATAAGTCAacagaaattcttaaaacaga
atctaaaacaatgataaaaagaaagggaGCTAAGGTGTCACCTTGTAGAA
CTCCAGCATGAATGTCAAAAATATCAGTGTCTCCGTCAGCTGTAATGACC
TTTGCTTTGGTGGACACGTAGAGTGCCCTGATGGCTGAAATCAGTTTCTC
TGGAATGCCGTACAATTTaagaatttcaaacatttttacaCGGGATATGG
AatcaaaggcttttttaaagtcaacaaaGCAAATAAAAGCATCTTTGTTA
AGTTTTCGCATTTCTTCCAAAATACGCCTGATGGCTAAAATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014178XLOC_014178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025240-exon-sc0000527-1491911889:155590..156035TCONS_00025240-exon-sc0000527-1491911889:155590..156035Clytia hemisphaericaexon
TCONS_00025240-exon-sc0000527-1510915933:155590..156035TCONS_00025240-exon-sc0000527-1510915933:155590..156035Clytia hemisphaericaexon
TCONS_00025240-exon-sc0000527-1575043694:155590..156035TCONS_00025240-exon-sc0000527-1575043694:155590..156035Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025240-proteinTCONS_00025240-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000527supercontigsc0000527:155590..156035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17952	1.59479	2.68069	0.858914	0.443235	0.31331	1.09926	0.672049	1.13062	0.891404	1.97504	1.18353	2.24464	4.85344	1.45778	2.27773	1.58217	3.65326	2.71171	3.0529	1.63417	0.800084	2.17379	0.788232	0.92139	1.26596	0	2.92761	1.26563	2.48398
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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