TCONS_00025237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025237
Unique NameTCONS_00025237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025237 ID=TCONS_00025237|Name=TCONS_00025237|organism=Clytia hemisphaerica|type=transcript|length=910bp
TGACAGCTTATAATAGCAGGAGTCATTATAGCGAAGATCAAAAATGGCTT
GACAATCCTAGCAAATCATCATGGGCTGTTTATCATTCAGTAAATCAAGA
GCCACCTACATGCAAAGATACGTCCGCTATGCTTCCGATTCTACGAGACG
ACTCCAAGTCACCAGCTACAATCAAGCATTTGCTGAACATTTTAATGAAG
TCAATCAATTTCTTAAACCCTAGACAAGCAGCAGTGATTGGTCTTGACCA
GCCTTTGTACGCGATCGTAAAGAAAATCAAGTGGCAGCATCCTTCGCTAT
ATGGTGAAAAGAAACTGGTATTGATGCTTGTGGCGTTACACATCGAGATG
GTCATGATGGGATGTATAGGTGATTTTCTAGAGAATAGTGGCTGGACAGA
AGCTCTTTCAAGTAGTGGAGTGACATCATCAGGAAATGAAGCAATGTTAT
CAGGTCATGATGTCGCTAAAACAAAGTATTGTCACCAAGTAACAGCAATG
TCATTAAATCATCTGATGAAAGTGACATGTCATTACAAGGCCGAAAGAAG
ATTGTTGTTCGTGGATACAGATGTTGTTCGTGGATACAGATGTTCTCGTT
CTTGCAGTCTCCGTGTTCGCCCGCTTGAAAGAACAGTTGGAAGAGTTATG
GGTCGATTTTGGAACGGGGAAGCATCGGCAATTTATTCCAGCTCACAAAA
TATTCTCTAAAATTGGTCAGTCGAAAGCCTTAGCACTTCTATTTTTCCAT
GCCTTTACAGGCTGCGATCAAGTATCTTTTTTCTCACGTGTTTCAAAGGA
TTCAGCATGGAAAGTTTGGGAGTCGTTCGAAGAAATTACTTCTGTTTTCG
AAAAGCTGAGTAACCGACCATCACTATCCGACGTAGAGGAGTCACTGCCT
ATTATCGAGC
Run BLAST on NCBI

protein sequence of TCONS_00025237-protein

>TCONS_00025237-protein ID=TCONS_00025237-protein|Name=TCONS_00025237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
TAYNSRSHYSEDQKWLDNPSKSSWAVYHSVNQEPPTCKDTSAMLPILRDD
SKSPATIKHLLNILMKSINFLNPRQAAVIGLDQPLYAIVKKIKWQHPSLY
GEKKLVLMLVALHIEMVMMGCIGDFLENSGWTEALSSSGVTSSGNEAMLS
GHDVAKTKYCHQVTAMSLNHLMKVTCHYKAERRLLFVDTDVVRGYRCSRS
CSLRVRPLERTVGRVMGRFWNGEASAIYSSSQNIL
Run BLAST on NCBI

transcript from alignment at sc0000527:121822..122731

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025237 ID=TCONS_00025237|Name=TCONS_00025237|organism=Clytia hemisphaerica|type=transcript|length=910bp|location=Sequence derived from alignment at sc0000527:121822..122731 (Clytia hemisphaerica)
GCTCGATAATAGGCAGTGACTCCTCTACGTCGGATAGTGATGGTCGGTTA
CTCAGCTTTTCGAAAACAGAAGTAATTTCTTCGAACGACTCCCAAACTTT
CCATGCTGAATCCTTTGAAACACGTGAGAAAAAAGATACTTGATCGCAGC
CTGTAAAGGCATGGAAAAATAGAAGTGCTAAGGCTTTCGACTGACCAATT
TTAGAGAATATTTTGTGAGCTGGAATAAATTGCCGATGCTTCCCCGTTCC
AAAATCGACCCATAACTCTTCCAACTGTTCTTTCAAGCGGGCGAACACGG
AGACTGCAAGAACGAGAACATCTGTATCCACGAACAACATCTGTATCCAC
GAACAACAATCTTCTTTCGGCCTTGTAATGACATGTCACTTTCATCAGAT
GATTTAATGACATTGCTGTTACTTGGTGACAATACTTTGTTTTAGCGACA
TCATGACCTGATAACATTGCTTCATTTCCTGATGATGTCACTCCACTACT
TGAAAGAGCTTCTGTCCAGCCACTATTCTCTAGAAAATCACCTATACATC
CCATCATGACCATCTCGATGTGTAACGCCACAAGCATCAATACCAGTTTC
TTTTCACCATATAGCGAAGGATGCTGCCACTTGATTTTCTTTACGATCGC
GTACAAAGGCTGGTCAAGACCAATCACTGCTGCTTGTCTAGGGTTTAAGA
AATTGATTGACTTCATTAAAATGTTCAGCAAATGCTTGATTGTAGCTGGT
GACTTGGAGTCGTCTCGTAGAATCGGAAGCATAGCGGACGTATCTTTGCA
TGTAGGTGGCTCTTGATTTACTGAATGATAAACAGCCCATGATGATTTGC
TAGGATTGTCAAGCCATTTTTGATCTTCGCTATAATGACTCCTGCTATTA
TAAGCTGTCA

Coding sequence (CDS) from alignment at sc0000527:121822..122731

>TCONS_00025237 ID=TCONS_00025237|Name=TCONS_00025237|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000527:121822..122731 (Clytia hemisphaerica)
TTAGAGAATATTTTGTGAGCTGGAATAAATTGCCGATGCTTCCCCGTTCC
AAAATCGACCCATAACTCTTCCAACTGTTCTTTCAAGCGGGCGAACACGG
AGACTGCAAGAACGAGAACATCTGTATCCACGAACAACATCTGTATCCAC
GAACAACAATCTTCTTTCGGCCTTGTAATGACATGTCACTTTCATCAGAT
GATTTAATGACATTGCTGTTACTTGGTGACAATACTTTGTTTTAGCGACA
TCATGACCTGATAACATTGCTTCATTTCCTGATGATGTCACTCCACTACT
TGAAAGAGCTTCTGTCCAGCCACTATTCTCTAGAAAATCACCTATACATC
CCATCATGACCATCTCGATGTGTAACGCCACAAGCATCAATACCAGTTTC
TTTTCACCATATAGCGAAGGATGCTGCCACTTGATTTTCTTTACGATCGC
GTACAAAGGCTGGTCAAGACCAATCACTGCTGCTTGTCTAGGGTTTAAGA
AATTGATTGACTTCATTAAAATGTTCAGCAAATGCTTGATTGTAGCTGGT
GACTTGGAGTCGTCTCGTAGAATCGGAAGCATAGCGGACGTATCTTTGCA
TGTAGGTGGCTCTTGATTTACTGAATGATAAACAGCCCATGATGATTTGC
TAGGATTGTCAAGCCATTTTTGATCTTCGCTATAATGACTCCTGCTATTA
TAAGCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014175XLOC_014175Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025237-proteinTCONS_00025237-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025237-exon-sc0000527-1491911889:121822..122731TCONS_00025237-exon-sc0000527-1491911889:121822..122731Clytia hemisphaericaexon
TCONS_00025237-exon-sc0000527-1510915933:121822..122731TCONS_00025237-exon-sc0000527-1510915933:121822..122731Clytia hemisphaericaexon
TCONS_00025237-exon-sc0000527-1575043694:121822..122731TCONS_00025237-exon-sc0000527-1575043694:121822..122731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000527supercontigsc0000527:121822..122731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286615	0.296117	0.537457	0.664809	0.515033	0.455751	0.520539	0.802841	0.287984	0.211543	1.06213	0.230266	0.197361	0.104866	0.177395	0.399068	0.434376	0.279364	0.558485	0.284006	0.419947	0.553637	0	0.146302	0.187018	0.265568	0.330497	0.222186	0.185274	0.286159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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