TCONS_00025235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025235
Unique NameTCONS_00025235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025235 ID=TCONS_00025235|Name=TCONS_00025235|organism=Clytia hemisphaerica|type=transcript|length=303bp
AAGGCATGATCGCCCTTCCCGGAAACCATGCTGTGTTGGGTTGAACAAGT
CATTGTTGTTGATAAATTCGACTATCTTCTTTCGAACTATTTTTTCAAAC
TCCTTGGTNACCGATGTGTATTGGTCTTGGAGTATATTAGCAATACGGTC
AGCATCATATatcaaagaattatttttgtcaCGCAGTGGTCCAACTTTGG
AATTTGATttactaccgggtgacccacgaaaaagttcggacctttctcgg
cgtcttgaggccgaacaaatgtcccaaagtgctcggaattttggtattta
aaa
Run BLAST on NCBI

transcript from alignment at sc0000527:34721..35023

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025235 ID=TCONS_00025235|Name=TCONS_00025235|organism=Clytia hemisphaerica|type=transcript|length=303bp|location=Sequence derived from alignment at sc0000527:34721..35023 (Clytia hemisphaerica)
ttttaaataccaaaattccgagcactttgggacatttgttcggcctcaag
acgccgagaaaggtccgaactttttcgtgggtcacccggtagtaaATCAA
ATTCCAAAGTTGGACCACTGCGtgacaaaaataattctttgatATATGAT
GCTGACCGTATTGCTAATATACTCCAAGACCAATACACATCGGTNACCAA
GGAGTTTGAAAAAATAGTTCGAAAGAAGATAGTCGAATTTATCAACAACA
ATGACTTGTTCAACCCAACACAGCATGGTTTCCGGGAAGGGCGATCATGC
CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014173XLOC_014173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025235-exon-sc0000527-1491911889:34721..35023TCONS_00025235-exon-sc0000527-1491911889:34721..35023Clytia hemisphaericaexon
TCONS_00025235-exon-sc0000527-1510915933:34721..35023TCONS_00025235-exon-sc0000527-1510915933:34721..35023Clytia hemisphaericaexon
TCONS_00025235-exon-sc0000527-1575043694:34721..35023TCONS_00025235-exon-sc0000527-1575043694:34721..35023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000527supercontigsc0000527:34721..35023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.5536	4.87238	6.34618	6.45455	18.4154	11.7625	11.1938	8.71489	4.0846	6.16466	3.9355	9.80331	0.265975	0	2.18867	2.84839	4.81134	2.41305	2.11046	2.30976	3.4449	6.00101	0.459551	1.23781	13.2328	8.46333	4.25047	3.0451	3.41788	0.888757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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