TCONS_00025234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025234
Unique NameTCONS_00025234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025234 ID=TCONS_00025234|Name=TCONS_00025234|organism=Clytia hemisphaerica|type=transcript|length=313bp
TTTGATAGCAAAAATCACATTCATGATCTTGAGAAGTCTGTGTACAATCT
CTTTCTATCGGAACTATTTGACAGGTTCAGTATCATATACaatcaattca
acaattttgtctttgttggtcACTCTAGCACTAGATAGCCCTATCATATG
CTTCAGCTGCTGTTGTATTTTGCAGGCCATGGGTCATGCTGTATCAtgat
ggacaaaataaaatcctccaAAAATTCCTCACAACAAGATTCAAAGCAAA
TCATTCCCATAATTTTAGAGTTTCTACAATGAcaataccgtaacttggtc
taatatcgacacc
Run BLAST on NCBI

transcript from alignment at sc0000527:30821..31133

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025234 ID=TCONS_00025234|Name=TCONS_00025234|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at sc0000527:30821..31133 (Clytia hemisphaerica)
ggtgtcgatattagaccaagttacggtattgTCATTGTAGAAACTCTAAA
ATTATGGGAATGATTTGCTTTGAATCTTGTTGTGAGGAATTTTtggagga
ttttattttgtccatcaTGATACAGCATGACCCATGGCCTGCAAAATACA
ACAGCAGCTGAAGCATATGATAGGGCTATCTAGTGCTAGAGTgaccaaca
aagacaaaattgttgaattgattGTATATGATACTGAACCTGTCAAATAG
TTCCGATAGAAAGAGATTGTACACAGACTTCTCAAGATCATGAATGTGAT
TTTTGCTATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014172XLOC_014172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025234-exon-sc0000527-1491911889:30821..31133TCONS_00025234-exon-sc0000527-1491911889:30821..31133Clytia hemisphaericaexon
TCONS_00025234-exon-sc0000527-1510915933:30821..31133TCONS_00025234-exon-sc0000527-1510915933:30821..31133Clytia hemisphaericaexon
TCONS_00025234-exon-sc0000527-1575043694:30821..31133TCONS_00025234-exon-sc0000527-1575043694:30821..31133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000527supercontigsc0000527:30821..31133 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.5181	3.93966	2.84095	0.514407	1.54274	0.790375	0	1.64188	4.15156	2.52998	4.59932	5.76436	3.55661	4.88142	0	2.90542	2.95471	2.41119	2.12348	3.07491	2.82752	3.91987	1.71395	4.77661	1.4646	1.65665	1.75578	3.87951	5.63695	6.49249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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