TCONS_00025218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025218
Unique NameTCONS_00025218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025218 ID=TCONS_00025218|Name=TCONS_00025218|organism=Clytia hemisphaerica|type=transcript|length=811bp
tctagagtaaataaaaaagaaattttggcagccATGGGTGGAAGTGATGA
AGGAGATGCAAGCACTGCCAAAGCTGATCAAACTGTTCGTGGATTGAAAA
CTGATTCTGAAGATCTCGTCGAATCTTACaaatcatTAAAGACGAAAGTC
GAAGGCAACAAACGAAGTATCATCGGTTTAACAACCGAAATGGTCGAAGT
CCGAAAACGAATCCGACAATTGATAAACAAACGAACAGAAGCCGCTGGTC
CCGACTACGACGAATACAAAATGAAccgaaaaatctcaaaaacattTGAA
CCAATCGATGTTAGCCGATCACGATCGGCTTACAGTAAAGTCACAAATAT
CGACCCCGATAGTGGAGCCGTCGAGACAGTCACCGAAGAATCATCTTACT
CAGTTAAAGTGACCGTCAATTCGAGTAGCACTGTTGAAGAAAGTGAAGAT
TAGATGCGTTAgctttttttcctaatttttgacTACTTTCAAAGCCTTGT
ATCTTCCATTCGCCTTTAACAAGATTTCCTAGCTAGCACATAACGTTAAT
TCAACGTTCTCAggttttgtgccagctgggtagcaATCTGTAGCTTTTAA
AATGAGAGAGAGCTGAGTATAGCTATATTTCGAATAATGGATTTCGACCA
TTGCAGCATAACATCTATATTTTGTTATACAAGGATATATGAATTATTTT
CATTAGGTGAATGAGGTATAAGGCTTTTTATGGAAccttttgtaaatctt
tcttctATGTAATAATTTATACATTGTATTTACATGATAtcgaaataaaa
caatttttacc
Run BLAST on NCBI

protein sequence of TCONS_00025218-protein

>TCONS_00025218-protein ID=TCONS_00025218-protein|Name=TCONS_00025218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
SRVNKKEILAAMGGSDEGDASTAKADQTVRGLKTDSEDLVESYKSLKTKV
EGNKRSIIGLTTEMVEVRKRIRQLINKRTEAAGPDYDEYKMNRKISKTFE
PIDVSRSRSAYSKVTNIDPDSGAVETVTEESSYSVKVTVNSSSTVEESED
Run BLAST on NCBI

transcript from alignment at sc0000527:125638..128220-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025218 ID=TCONS_00025218|Name=TCONS_00025218|organism=Clytia hemisphaerica|type=transcript|length=2583bp|location=Sequence derived from alignment at sc0000527:125638..128220- (Clytia hemisphaerica)
TCTAGAGTAAATAAAAAAGAAATTTTGGCAGCCATGGGTGGAAGTGATGA
AGGAGATGCAAGCACTGCCAAAGCTGATCAAACTGTTCGTGGATTGAAAA
CTGATTCTGAAGATCTCGTCGAATCTTACGTAAGTTTCGATATTTAGTTT
TGTGGGAATAACTTTTCACTTGGAAGGACTGCAAACTTTTTTTTCCTTAA
CAAGAACCATTTAATGCGAATTTCAGGTTTCTGCAAGGTGTATACACATT
TTAGACCGTAGGCGCGTGCCACTTTATTATTTAATTTACCACCCTAAACT
CGATCCAATCTTTTTTTTACACTTTTTCTATTGTTTTTAGGTGCGAAAAA
AAAGACTGGACATAAAAATGCCCGCGCAGTAATAGGCGGCTACGGTCGAA
AAGGTGTATTGTAAATGCCCATATGAGAGATGGTGCACTATAAGGGTGTC
AAAATGAGAAAAACATTTTGGGGAAAATTTAGGAAAATCCTACCAAAGTC
AAATTATTCATATATTTGTAAAAACTTACTGGTTGAGATAAGTTCTGAAG
AAACTCTATGACTCTGAGCGAAGTCCGAAATAGAGACTTTTTGTACTTGT
GCATGAAAAATACTAGAATTTCGACGTAAGCGTCCTTCGAAACCCTTAGA
TGACAACATAGATTTCCCAGAACATAAGTTTGGCTTGGAGATCTAAAAGC
TGCAAAGTTAGAATTGCGACTGAATTACCATAAAACTTCAAATTATCATT
CATGTTCAGTTTTGACGTTCAAGGACCTCAAAAATTATGTCACGTTATAA
AATCCTCGACCGACTATTTAATTGAATTAGTACATTTTAATATTGTGGTT
TTCAAAAAATGAAAGCAACAGCGGTTTTCATATATAATGAAGTTTCCTCT
GTGTGCAGTGATCTTTTACTGAGTTTAGGGACTTCTCCACTTGGGAAGGA
GTGTGCCTTGTCTTGTCCAGATGAAAACGTTCATCCAAATACCGATAAAT
AGGGGTAATTCCAGTAATTGCCTTCTCTAAAGGGTAGTGTACGAATACAA
TGACAACGGACTAAAGAGGAACTTAACTTACATACATACTGGAGAACATT
TGTTGGCAATTAGGTCCCCTTTAGATAGTCCCGTTTATTAAAATTTCAAA
AATTTTCCACCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCCCCC
CCCCCCCCGTTTTTTCCAACCCCCCGTTTATTTGGAACCTAAGAGTACTC
TAAACAAGAAACTTGCTCTATCGACAGTGTTCGAATACAATGACAACGGA
CTAAAGAGGAACCTAACTTACATACATACTGGAGATAATTTGTTGACTGT
GTCATGAATTATCATAGTAAGCTGAAAACTTCTTTATAAACCTTCAACAT
CAATCAATTCTGTTTCACTTTTTTTTCGGACACATTGGGTTGTTCCATAG
CTATACAAAAGGGGGGATGGCGAAAACTGTCTTTTTGATTTTTCTAGGGG
TGATGACAAAGCATCATCTGCAAGGGAATCATTAATTGTTCAAGAGGTCT
AGAAACTCTTTTTCCAGCGGCTTATGCAGACTTTTCCATTTTTAAAGGAA
AAAGGGCCCACACATTTACAAGAAAATGACCTGAAAAAGTTTGTAAAAAA
AGATTGTTAACAATATCCAAATATGCAAAGCTATTTCATCATATTTTTCA
GAAATCATTAAAGACGAAAGTCGAAGGCAACAAACGAAGTATCATCGGTT
TAACAACCGAAATGGTCGAAGTCCGAAAACGAATCCGACAATTGATAAAC
AAACGAACAGAAGCCGCTGGTCCCGACTACGACGAATACAAAATGAACCG
AAAAATCTCAAAAACATTTGAACCAATCGATGTTAGCCGATCACGATCGG
CTTACAGTAAAGTCACAAATATCGACCCCGATAGTGGAGCCGTCGAGACA
GTCACCGAAGAATCATCTTACTCAGTTAAAGTGACCGTCAATTCGAGTAG
CACTGTTGAAGAAAGTGAAGATTAGATGCGTTAGCTTTTTTTCCTAATTT
TTGACTACTTTCAAAGCCTTGTATCTTCCATTCGCCTTTAACAAGATTTC
CTAGCTAGCACATAACGTTAATTCAACGTTCTCAGGTTTTGTGCCAGCTG
GGTAGCAATCTGTAGCTTTTAAAATGAGAGAGAGCTGAGTATAGCTATAT
TTCGAATAATGGATTTCGACCATTGCAGCATAACATCTATATTTTGTTAT
ACAAGGATATATGAATTATTTTCATTAGGTGAATGAGGTATAAGGCTTTT
TATGGAACCTTTTGTAAATCTTTCTTCTATGTAATAATTTATACATTGTA
TTTACATGATATCGAAATAAAACAATTTTTACC

Coding sequence (CDS) from alignment at sc0000527:125638..128220-

>TCONS_00025218 ID=TCONS_00025218|Name=TCONS_00025218|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000527:125638..128220- (Clytia hemisphaerica)
AAATCATTAAAGACGAAAGTCGAAGGCAACAAACGAAGTATCATCGGTTT
AACAACCGAAATGGTCGAAGTCCGAAAACGAATCCGACAATTGATAAACA
AACGAACAGAAGCCGCTGGTCCCGACTACGACGAATACAAAATGAACCGA
AAAATCTCAAAAACATTTGAACCAATCGATGTTAGCCGATCACGATCGGC
TTACAGTAAAGTCACAAATATCGACCCCGATAGTGGAGCCGTCGAGACAG
TCACCGAAGAATCATCTTACTCAGTTAAAGTGACCGTCAATTCGAGTAGC
ACTGTTGAAGAAAGTGAAGATTAGTCTAGAGTAAATAAAAAAGAAATTTT
GGCAGCCATGGGTGGAAGTGATGAAGGAGATGCAAGCACTGCCAAAGCTG
ATCAAACTGTTCGTGGATTGAAAACTGATTCTGAAGATCTCGTCGAATCT
TACAAATCATTAAAGACGAAAGTCGAAGGCAACAAACGAAGTATCATCGG
TTTAACAACCGAAATGGTCGAAGTCCGAAAACGAATCCGACAATTGATAA
ACAAACGAACAGAAGCCGCTGGTCCCGACTACGACGAATACAAAATGAAC
CGAAAAATCTCAAAAACATTTGAACCAATCGATGTTAGCCGATCACGATC
GGCTTACAGTAAAGTCACAAATATCGACCCCGATAGTGGAGCCGTCGAGA
CAGTCACCGAAGAATCATCTTACTCAGTTAAAGTGACCGTCAATTCGAGT
AGCACTGTTGAAGAAAGTGAAGATTAGTCTAGAGTAAATAAAAAAGAAAT
TTTGGCAGCCATGGGTGGAAGTGATGAAGGAGATGCAAGCACTGCCAAAG
CTGATCAAACTGTTCGTGGATTGAAAACTGATTCTGAAGATCTCGTCGAA
TCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014166XLOC_014166Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025218-proteinTCONS_00025218-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025218-exon-sc0000527-1575043694:128092..128220TCONS_00025218-exon-sc0000527-1575043694:128092..128220Clytia hemisphaericaexon
TCONS_00025218-exon-sc0000527-1575043694:125638..126319TCONS_00025218-exon-sc0000527-1575043694:125638..126319Clytia hemisphaericaexon
TCONS_00025218-exon-sc0000527-1510915933:128092..128220TCONS_00025218-exon-sc0000527-1510915933:128092..128220Clytia hemisphaericaexon
TCONS_00025218-exon-sc0000527-1510915933:125638..126319TCONS_00025218-exon-sc0000527-1510915933:125638..126319Clytia hemisphaericaexon
TCONS_00025218-exon-sc0000527-1491911889:128092..128220TCONS_00025218-exon-sc0000527-1491911889:128092..128220Clytia hemisphaericaexon
TCONS_00025218-exon-sc0000527-1491911889:125638..126319TCONS_00025218-exon-sc0000527-1491911889:125638..126319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000527supercontigsc0000527:125638..128220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0589331	0	0	0.0652821	0.476848	0.251208	0.0757678	0.0709329	0.248309	0.123028	0	0.156997	202.126	120.28	1.3051	0.790068	31.0571	25.4842	168.333	137.405	7.74927	4.58581	0.0675716	0.0614324	0.253096	1.01647	0	0	0.0654112	0.133287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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