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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025212 ID=TCONS_00025212|Name=TCONS_00025212|organism=Clytia hemisphaerica|type=transcript|length=2139bpRun BLAST on NCBI protein sequence of TCONS_00025212-protein >TCONS_00025212-protein ID=TCONS_00025212-protein|Name=TCONS_00025212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp FRNKQRTMASSSSAASSSSEEDQFFKSFLQSHFFMLENGDLSNKEKADKLRun BLAST on NCBI transcript from alignment at sc0000527:102708..120077+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025212 ID=TCONS_00025212|Name=TCONS_00025212|organism=Clytia hemisphaerica|type=transcript|length=17370bp|location=Sequence derived from alignment at sc0000527:102708..120077+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000527:102708..120077+ >TCONS_00025212 ID=TCONS_00025212|Name=TCONS_00025212|organism=Clytia hemisphaerica|type=CDS|length=32640bp|location=Sequence derived from alignment at sc0000527:102708..120077+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025212 vs. Swiss-Prot (Human)
Match: FIGL1 (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2) HSP 1 Score: 417.157 bits (1071), Expect = 5.793e-135 Identity = 252/394 (63.96%), Postives = 295/394 (74.87%), Query Frame = 2
Query: 872 FRTAGEQFHIDQRLKGRNPSSSSVSTKDYGSKKKSLGTRRGNGVGNKFVPPVTRDKENNVEDRVTKAVLKNSSNGG------GNSKLDEKYEAFDWMKNIDPKMIELIENEIMDNGPQISWNDIAGLDFAKKTIQEIVIWPMLRPDIFXXXXXXXXXXXXXXXXXXXXXXIGKCIASQSKATFFSISASSLTSKWVGEGEKMVRALFGVARCHQPAVIFIDEIDSLLTXXXXXXXXXXXXIKTEFLVQLDGATSSSNERILVVGATNRPQELDEAARRRLVKRLYIPLPKAEARIQIVSNLLSKQSHEVPSNDLTVIGEKTDGFSGADMASLCREAALGPIRMI--TDIQNINADDVRPVNLHDFHMALQNVRPSVSQDDLKLYSDWNKTYGSG 2029
F+TA EQ +DQ+ K P +S S+ YG KKSLG R G+ KFVPP+ K++ E NGG G + + + +KN++PKMIELI NEIMD+GP ++W DIAG++FAK TI+EIV+WPMLRPDIFTGLRGPPKG+LLFGPPGTGKTLIGKCIASQS ATFFSISASSLTSKWVGEGEKMVRALF VARC QPAVIFIDEIDSLL+ R D EHESSRRIKTEFLVQLDGAT+SS +RILVVGATNRPQE+DEAARRRLVKRLYIPLP+A AR QIV NL+SK+ + ++ I +++D FSGADM LCREA+LGPIR + DI I D VRP+ DF A + VRPSVS DL+LY +WNKT+G G
Sbjct: 295 FKTAKEQLWVDQQKKYHQPQRASGSS--YGGVKKSLGASRSRGILGKFVPPIP--KQDGGEQ-----------NGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 673 The following BLAST results are available for this feature:
BLAST of TCONS_00025212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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