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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025211 ID=TCONS_00025211|Name=TCONS_00025211|organism=Clytia hemisphaerica|type=transcript|length=1763bp
TTCCAAAAAAGAGAATTTACATTGTAATAATACTTGACACCATGTCGCAG
ATTTTCAGTCAAGATCCTGTTTGGAGCCAAACAACAAAGAGCGGTTTCCG
TCAGCAAGTCTTTGTCATGTACCATAGCACAAAACCGCATTTGGTTCAAG
AGATACTCGATGAGGGATTTAAAATAAGTCAAAGACCAGAACTCATATTA
AGTAACGGTTTGTATGTATCTAGAGATATTGAAAAAACTTTACCTTATGG
TGATGTGTGTTTCAAGCTGTTGGTTTATCCAGGAAAATCTGTCATGGTTA
CTAAACATGATGATCCAATGAGAAAACAATGGCATAAAGAATTCTCTTCA
GCGTGGATAGCACCAAAcagttatgattttttcaagtttgaaaataaaga
gGAAACATGCGTCAAATCTTCATCACAAGTCCGTATATTAGGGATTGCTA
ATGGGTATGAATTATTAAGCCCTCATTTACAAAGACAACTACCAAACGTG
TTTGGCACCAATAGAGATAAACTGACCCCTAGAGAAAACAAAATCTTGGA
CCAAATGCTGGAAGATTTAGGAATAATATACGCATAAAAGCAAAATGTCG
CAGATTTTCAGTCAAGATCCTGTTTGGAgccaaacaacaaagagtggtTT
CCGTCAGCAAGTCTTTGTCATGTACCATAGCACAAAACCACATTTGGTTC
GTGAGATTTTGAATGAGGGTTTCAAAATTAGCCAAAGGTTTAACTTGATG
CTAGACGATGGTCTCTATGTTAGTAGAGATATCGGGAAAACTTTTACCTA
TGGGCCAGTGTGTTTCAAGTTATTAGTCTACCCTGGGAAATCAATTATGA
TTACAGAATATGATGACCCAATGAGGAGAGAATGGCACCGAAACTTCTCA
TCAGCCTGGATACCACAAAACAGCTTTGATTATTTCCATTATAACAACTA
TGAGGAAACATGCGTCAAGTCCTCTACACAAGTTCGCATCCTTGGGATAG
CTTACGGTCACGAGTTACTAAGTTACGATTTACGACAACAGCTTCCTAAT
TTGTATGGTACAGGTGATAGTTTAAACCGCACTGAAAATAAGATTCTAGA
TTCAATGTTGGAGCAGTTAGGAATCATTTACAGTAGTTTTGTACACGATG
AATCTTCATTATTTTTGGAATGTTCTCGCTCAACTGATTGCGTCCGAGTC
AACGATTGGACTGGTAGAGATAATCAACTCTGGACTCGAACCTGGGATAA
TTGTTTAGAGAATAAAGGTAATGGATTGGTGTTGGTTCCCGGTGATGACT
ACAGTTTAGATTCTCCACTCATGGTTGAACCAGTTGACGCAGCTGGTGAG
AAAAATCAGAAATGGAGACTCGACAATCGTGGTAGATTTTTACATAAAGA
TTCAAATGAATATTTGTGTGTAGATACTACAAGAAGACGTATGGAGGATC
AACTAGAGCTGAGATGTtataattttgcaaaaaatgatCATTGGCGTTTT
CGCTGTATGGGGAACACCAGAACCACGGATAGTTTTGTGCATTTTACACC
TTGGCAAGAAATGGTTAGTTGGAACTAAAGACTTTTATTAAAGGAAGTGC
AAGTAGTTTTGAGATGATTCTAAAATACTAGGGGTGTACTGGGCAAAAAG
AGGTATGAGCTGTGACTGGATGTGACGCCATCCTTTTTCAGTCCCATAAT
GTCGTAAAAACACCTAAACACCAAAGTCTTTTCCTTTTTGGGGGAATTTG
GGAAAAAGTGGAA Run BLAST on NCBI transcript from alignment at sc0000527:98525..101419+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025211 ID=TCONS_00025211|Name=TCONS_00025211|organism=Clytia hemisphaerica|type=transcript|length=2895bp|location=Sequence derived from alignment at sc0000527:98525..101419+ (Clytia hemisphaerica)
TTCCAAAAAAGAGAATTTACATTGTAATAATACTTGACACCATGTCGCAG
ATTTTCAGTCAAGATCCTGTTTGGAGCCAAACAACAAAGAGCGGTTTCCG
TCAGCAAGTCTTTGTCATGTACCATAGCACAAAACCGCATTTGGTTCAAG
AGATACTCGATGAGGGATTTAAAATAAGTCAAAGACCAGAACTCATATTA
AGTAACGGTTTGTATGTATCTAGAGATATTGAAAAAACTTTACCTTATGG
TGATGTGTGTTTCAAGCTGTTGGTTTATCCAGGAAAATCTGTCATGGTTA
CTAAACATGATGATCCAATGAGAAAACAATGGCATAAAGAATTCTCTTCA
GCGTGGATAGCACCAAAcagttatgattttttcaagtttgaaaataaaga
gGAAACATGCGTCAAATCTTCATCACAAGTCCGTATATTAGGGATTGCTA
ATGGGTATGAATTATTAAGCCCTCATTTACAAAGACAACTACCAAACGTG
TTTGGCACCAATAGAGATAAACTGACCCCTAGAGAAAACAAAATCTTGGA
CCAAATGCTGGAAGATTTAGGTATTATTTATAGTAGTTTTGTTCATCATG
GCTCTTTCTTGTTTCTGGAATGTTCCAAATTTACTAATGATATTTATTTG
AATGATTGGACTGGAGAAGATAACCAACTATGGGTTCGAACATGGGATAA
TTGTCTGGAAAACAAACACAATGGGTTAGTATTGGTGCCTGATGGAAATG
TTGGCGTTACTGTGGAACCAGTTGATGCAGCTGGGGAGAAGAATCAAAAA
TGGAAGCTTGATAATCAACAAagatttttacataaaaattcTAATCATGC
ACTTTGTGTGAATCTTCAACATCAACGTCAACTACAAATGAGGCCATATC
AACATTCTAAAAATGAGCAATGGCGTTTTCGTTGCATGGGAACCACACGA
ACCACGGATAGTTTTGTTCACTTTACACCATGGCAAGAAATGGTTAGTTG
GGAATGACATCGATAATGGTGATCTAATGATTTCACCATATTTTGCTATC
AATTATCTTATCGTAAAAGGGGTATTTTCCTTCACGGGAGGAAGCTTGTC
ATCCAAACTACAGACACCAGTTGTCAAATTGTCAAGTCAGAACATTATTG
TTGGATTTTACTGGATTTTATTCCAGTTTTATGATTGCAAACCTGCAAAA
AAAAACTACCCTTTAACACATTAGTGCGATGGAAGTTACTCTTTTTTTCA
GTAATGCCCCAACAAGGGGGTGAGCATTAATTTGTTTTGTTACAGTAGTC
GTagtaatttttttcacttttagaATGTCTTTTTATGATAACAANGTTAC
AGTAGTCgtagtgattttttttcacttttaggATGTCTTTTTATGATAAC
AAGGTACTCAAAAACAAATTACAATTGTTATCAATTTGACAAGTATCAGC
TATCAATGAAATCACCAATCTTGTAAAAATTTTGTGGCTAACAGGTCTTT
GGTgtattttcttgtgtttttgtcaaatttggctGGTTTTTTTATTAAGA
GCCCTATACGAACTGTCGTAAATTTGCACTGATTGTcctaaactttttat
tttttacgtcCAGCTAATTTAATGGTGAGAATCAGCCTTTTATATTGTAC
CACACCCTTTTTCGAAtctatattatttaaaaattgcgATTCTTTTTTGT
AGGAATAATATACGCATAAAAGCAAAATGTCGCAGATTTTCAGTCAAGAT
CCTGTTTGGAgccaaacaacaaagagtggtTTCCGTCAGCAAGTCTTTGT
CATGTACCATAGCACAAAACCACATTTGGTTCGTGAGATTTTGAATGAGG
GTTTCAAAATTAGCCAAAGGTTTAACTTGATGCTAGACGATGGTCTCTAT
GTTAGTAGAGATATCGGGAAAACTTTTACCTATGGGCCAGTGTGTTTCAA
GTTATTAGTCTACCCTGGGAAATCAATTATGATTACAGAATATGATGACC
CAATGAGGAGAGAATGGCACCGAAACTTCTCATCAGCCTGGATACCACAA
AACAGCTTTGATTATTTCCATTATAACAACTATGAGGAAACATGCGTCAA
GTCCTCTACACAAGTTCGCATCCTTGGGATAGCTTACGGTCACGAGTTAC
TAAGTTACGATTTACGACAACAGCTTCCTAATTTGTATGGTACAGGTGAT
AGTTTAAACCGCACTGAAAATAAGATTCTAGATTCAATGTTGGAGCAGTT
AGGAATCATTTACAGTAGTTTTGTACACGATGAATCTTCATTATTTTTGG
AATGTTCTCGCTCAACTGATTGCGTCCGAGTCAACGATTGGACTGGTAGA
GATAATCAACTCTGGACTCGAACCTGGGATAATTGTTTAGAGAATAAAGG
TAATGGATTGGTGTTGGTTCCCGGTGATGACTACAGTTTAGATTCTCCAC
TCATGGTTGAACCAGTTGACGCAGCTGGTGAGAAAAATCAGAAATGGAGA
CTCGACAATCGTGGTAGATTTTTACATAAAGATTCAAATGAATATTTGTG
TGTAGATACTACAAGAAGACGTATGGAGGATCAACTAGAGCTGAGATGTt
ataattttgcaaaaaatgatCATTGGCGTTTTCGCTGTATGGGGAACACC
AGAACCACGGATAGTTTTGTGCATTTTACACCTTGGCAAGAAATGGTTAG
TTGGAACTAAAGACTTTTATTAAAGGAAGTGCAAGTAGTTTTGAGATGAT
TCTAAAATACTAGGGGTGTACTGGGCAAAAAGAGGTATGAGCTGTGACTG
GATGTGACGCCATCCTTTTTCAGTCCCATAATGTCGTAAAAACACCTAAA
CACCAAAGTCTTTTCCTTTTTGGGGGAATTTGGGAAAAAGTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025211-exon-sc0000527-1491911889:98525..99094 | TCONS_00025211-exon-sc0000527-1491911889:98525..99094 | Clytia hemisphaerica | exon |
| TCONS_00025211-exon-sc0000527-1510915933:98525..99094 | TCONS_00025211-exon-sc0000527-1510915933:98525..99094 | Clytia hemisphaerica | exon |
| TCONS_00025211-exon-sc0000527-1575043694:98525..99094 | TCONS_00025211-exon-sc0000527-1575043694:98525..99094 | Clytia hemisphaerica | exon |
| TCONS_00025211-exon-sc0000527-1491911889:100227..101419 | TCONS_00025211-exon-sc0000527-1491911889:100227..101419 | Clytia hemisphaerica | exon |
| TCONS_00025211-exon-sc0000527-1510915933:100227..101419 | TCONS_00025211-exon-sc0000527-1510915933:100227..101419 | Clytia hemisphaerica | exon |
| TCONS_00025211-exon-sc0000527-1575043694:100227..101419 | TCONS_00025211-exon-sc0000527-1575043694:100227..101419 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000527 | supercontig | sc0000527:98525..101419 + |
Blast
The following BLAST results are available for this feature:
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