TCONS_00025205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025205
Unique NameTCONS_00025205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025205 ID=TCONS_00025205|Name=TCONS_00025205|organism=Clytia hemisphaerica|type=transcript|length=782bp
GTTCTTTTGATAAGTCGTCACCTTTTGCTAGTTCGAGGAGTGCTTGAAGT
GATTTTGCGTCTTCGCTCTTGTTTTCTTCGTGTTGTCTCAGCTCGAAGTA
TTCTTCAGTGACTGAGTTCGACACGTTTTGGGAAGGTGAAGCGCCCCTGG
TAGACAGATCTTGCATTGGTGGAATAGCATTGGGTGGTAGCAAACTGCAT
TCCTTCAGCTGATTGAACTTCTTTGAGGTGACAGTAACTTCCACGCCATT
CTTGTCCATGAAGGTGATGAACTGTTGGCTTGCAGCTTGAATTTTTGAAG
GTTGAGTCGCTTCGGTAGGTCGTTCTTGCAAGGGTGGGGTAACATTGGGT
GGAAGTAAACCGCATTCTTTCAGCTGATCGAACTTCTTTGAAGTGACGGT
TACTTCTGCACCATTCTTATCTGAGAAGTTGATCAACTGTTGGCTTGTAG
GTGGAGTCGCTTTGGTGGGTCGATTTTGCAAGGGTGGAATGGCGTTGGGT
GGAAGTAAACCGCACTTTTTCAGTTGATTGAACTTCTTTGAAGAGACGGT
TACTTCGGCGCCATTCTTATCTGAGAAGGTGATCAATGAAGTTGGTTGTC
CACAGCTTGCTTCCGTGTTACGAAGTTGAGTTATTCTCCCCTTGttatta
ttgtttttcttttggcTCACAATTTCTTCGCGGGAGTCTCTTTGAGAGGA
AGAGTATTTTTGCTTATTGCGtgattttgcaatattttttgtTCGTTCCA
AATCAGCTTCGTAAACGACAACTGTTTTAAGC
Run BLAST on NCBI

transcript from alignment at sc0000527:73288..74684+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025205 ID=TCONS_00025205|Name=TCONS_00025205|organism=Clytia hemisphaerica|type=transcript|length=1397bp|location=Sequence derived from alignment at sc0000527:73288..74684+ (Clytia hemisphaerica)
GTTCTTTTGATAAGTCGTCACCTTTTGCTAGTTCGAGGAGTGCTTGAAGT
GATTTTGCGTCTTCGCTCTTGTTTTCTTCGTGTTGTCTCAGCTCGAAGTA
TTCTTCAGTGACTGAGTTCGACACGTTTTGGGAAGGTGAAGCGCCCCTGG
TAGACAGATCTTGCATTGGTGGAATAGCATTGGGTGGTAGCAAACTGCAT
TCCTTTAGCTGATTGAACTTCTTTGAGGTGACAGTAACTTCCACGCCATT
CTTGTCCATGAAGGTGATCAACTGTTGGCTTGTAGCTTGAATTTTCGAAG
GTGGAGTCGCTTCGGTAGGTCGTTCTTGCAAGGGTGGAATGGCGTTGGGT
GGAAGTAAACCACATTCCTTCAGCTGATTGAACTTCTTTGAGGTGACAGT
AACTTCCACGCCATTCTTGTCCATGAAGGTGATGAACTGTTGGCTTGCAG
CTTGAATTTTTGAAGGTTGAGTCGCTTCGGTAGGTCGTTCTTGCAAGGGT
GGGGTAACATTGGGTGGAAGTAAACCGCATTCTTTCAGCTGATCGAACTT
CTTTGAAGTGACGGTTACTTCTGCACCATTCTTATCTGAGAAGTTGATCA
ACTGTTGGCTTGTAGGTGGAGTCGCTTTGGTGGGTTGATTTTGCAAGGGT
GGAATGGCGTTGGGTGGAAGTAAACCGCACATTTTCAGTTGATTGAACTT
CTTTGAAGAGACGGTTACTTCGGCGCCATTCTTATCTGAGAAGGTGATCA
ACTGTTGGCTTGTAGGTGGAGTCGCTTTGGTGGGTCGATTTTGCAAGGGT
GGAATGGCGTTGGGTGGAAGTAAACCGCACTTTTTCAGTTGATTGAACTT
CTTTGAAGAGACGGTTACTTCGGCGCCATTCTTATCTGAGAAGGTGATCA
ACTGTTTGCTTGTAGGTGGAGTCGGTTTGGTGGGTCGATTTTGCAAGGGT
GGAATGGCGTTGGGTGGAAGTAAACCACACTTTTTCAGTTGATTGAACTT
CTTTGAAGAGACGGTAACTTCGGCGCCATTCTTATCTGAGAAGGTGATCA
ACTGTTGACTTGTAGGTGGAGTCGCTTTGATGGGTCGATTTTGCAAGGGT
GGAATGGCGTTGGGTGGAAGTAAACCACACTTTTTCAGTTGATTGAACTT
CTTTGAAGTGACGGTAACTTCGGCACCATTCTTATCCAAGAAGGTGATCA
ATGAAGTTGGTTGTCCACAGCTTGCTTCCGTGTTACGAAGTTGAGTTATT
CTCCCCTTGttattattgtttttcttttggcTCACAATTTCTTCGCGGGA
GTCTCTTTGAGAGGAAGAGTATTTTTGCTTATTGCGtgattttgcaatat
tttttgtTCGTTCCAAATCAGCTTCGTAAACGACAACTGTTTTAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014160XLOC_014160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025205-exon-sc0000527-1491911889:73288..73485TCONS_00025205-exon-sc0000527-1491911889:73288..73485Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1510915933:73288..73485TCONS_00025205-exon-sc0000527-1510915933:73288..73485Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1575043694:73288..73485TCONS_00025205-exon-sc0000527-1575043694:73288..73485Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1491911889:73651..73902TCONS_00025205-exon-sc0000527-1491911889:73651..73902Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1510915933:73651..73902TCONS_00025205-exon-sc0000527-1510915933:73651..73902Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1575043694:73651..73902TCONS_00025205-exon-sc0000527-1575043694:73651..73902Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1491911889:74053..74180TCONS_00025205-exon-sc0000527-1491911889:74053..74180Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1510915933:74053..74180TCONS_00025205-exon-sc0000527-1510915933:74053..74180Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1575043694:74053..74180TCONS_00025205-exon-sc0000527-1575043694:74053..74180Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1491911889:74481..74684TCONS_00025205-exon-sc0000527-1491911889:74481..74684Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1510915933:74481..74684TCONS_00025205-exon-sc0000527-1510915933:74481..74684Clytia hemisphaericaexon
TCONS_00025205-exon-sc0000527-1575043694:74481..74684TCONS_00025205-exon-sc0000527-1575043694:74481..74684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000527supercontigsc0000527:73288..74684 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120755	0.140208	0.068586	0.166994	0	0	0.0745229	0	0	0.313645	0	0	0	0	0	0	0	0.0658178	0	0	0	0	0	0	0.296642	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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