|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025202 ID=TCONS_00025202|Name=TCONS_00025202|organism=Clytia hemisphaerica|type=transcript|length=1903bp
gttttaaagaaaaagtttaaaaattcgACAAAATATGGAAAAGATAATAA
ACCTTAACAACGAGCAAATTAATCAATCGAAGGTATCCCTCGAAGATGTT
AAGAATGAATCCAACTGTGGTGAATCTGGAAAAATCTTGCGAAGTCAACG
TCCTCTTCAAACAATGGGTTGGTACCAACCTCATGAGTTAGCTGGTATTG
TTCCTGATGACGTTGTGAGGGCTTTCCAACATGAACAAATACTTTCTAGA
AGAGAGTGTAGAAAGAAAAGATATCCTAATGTTCCAGGTGCAAACAGAAA
AGAGCGAAAACAGAACCTTAACCGACAatccaacaaaatttttaacGAAT
TCGTTGAACAATATTGCGTTGAAAACAACATCGACCAGATGAAACtcctc
gaaaacgaaagtgaacgTAAAGAAATGGTAATcgaaaacaaagtcaaaaa
tCCTCGTCGTGAAAAAATGGCATGCGCAATGAAAATCGGATCATTCGATA
TGGAGAAATTCCCAAGAAGTAAAGAAGCTCTGGCATTTATGACCATGTAT
GATTCACGCGAAACAAGAAATCTTTTACCAAAGAAATTTCTCGCTTTATG
TGGCATCAAGCGAGAAGCTCTATGTAGAGATAAAATGAAGGAACTGGAAG
ATCCAAATATGATGTCAAAACGCATGGTCAGATGTGAATCGTACAAGTTC
TATAACGAACTGATAGAAGATTATTGTAATAAGCATGGCATTGACATTAC
ATTGTTCACTGAAAATAGTATGAACAATAAGCGAAAAATTCCAAAGGAAC
GAATGGATAAACTACGATacgctaaaaagaaaaatcagaaattcaAAGCC
AATAACAGAAAAATGAAACCTTCCCTTTCCAAGTCTTCTGAGGAGTCTCC
AAAACGTTATTGGAACCAATCAAAATCGAGATCAAACCAAGATGCTGTTA
CCGCTTCGCCATCAACCTCTATTTTAGCGAAGTACTCTGAAAGACGTTTC
TGGACTACTGACAGATCTCAAACCAAGATGGAATCAAcaaattttaattc
aaattcaCCGAAAGAAAGgcttgaagaaaattttgtgatACCTGAATCAC
AAGCTTACTCCACGGAATCTCACTAGCCATCAATCCTGGATCAACAAAAG
CTCATTGTACAAACACGTCCAAATTGTTCAACACTCCAAGGGCGTAGAGT
GCATTCTCAACATTTTCAGAAATCAAACCAACATTTTAATCATATCCctc
cccaaaatactggtttaAATCCAAATCTAAACACCGCTCAAATGCGACAA
AGTGAAATTCGTTATGGGCCAAGATCCCATCGAGGGATCAACCAGGTTGG
ACCTCCAAGGCTAGCATTGAACCAAGTGAAGCAATCATTGCCCGCTATGA
GTCATCAACCAATTAGACTATTTCCTAAAGCTCCTAGATTCGCATCAAAT
CCTAAATGTGGTCTTGTATCGGTGTTTCCTAGAATGGATACTCCTCCAAG
GCTTACAGTTGTTCCACGAGCGGGGTCTAGAAATATACATCCCGCAGGAT
TCGAAGGTGTTGGCATTTCACGCCCATTTTTCTCACCAAGGTTTCAGCAA
GTACGACCGCTTACAATTCAGAGATATCCACACCATCAAGTCCAGCGTGC
CCACAGCTTCTCAAGAGAGAGATGGGATAAGTACAGTTTCAatcaatatt
gaaaattgacggATGCGTTCATTGGTCAAATCGACAGTTGAAAttcgttt
ttattgtttttagtACATCAATTGTTTTGgatacttttttcttttgtttg
atttgtttccattttctattttcagtttGTATTTTTTCTATAGAGAATCA
TATCCAATTCAGAACTTAGACCTAATCGAtgaatttattattttctttct
gAA Run BLAST on NCBI protein sequence of TCONS_00025202-protein >TCONS_00025202-protein ID=TCONS_00025202-protein|Name=TCONS_00025202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MEKIINLNNEQINQSKVSLEDVKNESNCGESGKILRSQRPLQTMGWYQPH
ELAGIVPDDVVRAFQHEQILSRRECRKKRYPNVPGANRKERKQNLNRQSN
KIFNEFVEQYCVENNIDQMKLLENESERKEMVIENKVKNPRREKMACAMK
IGSFDMEKFPRSKEALAFMTMYDSRETRNLLPKKFLALCGIKREALCRDK
MKELEDPNMMSKRMVRCESYKFYNELIEDYCNKHGIDITLFTENSMNNKR
KIPKERMDKLRYAKKKNQKFKANNRKMKPSLSKSSEESPKRYWNQSKSRS
NQDAVTASPSTSILAKYSERRFWTTDRSQTKMESTNFNSNSPKERLEENF
VIPESQAYSTESH Run BLAST on NCBI transcript from alignment at sc0000527:56740..59574+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025202 ID=TCONS_00025202|Name=TCONS_00025202|organism=Clytia hemisphaerica|type=transcript|length=2835bp|location=Sequence derived from alignment at sc0000527:56740..59574+ (Clytia hemisphaerica)
gttttaaagaaaaagtttaaaaattcgACAAAATATGGAAAAGATAATAA
ACCTTAACAACGAGCAAATTAATCAATCGAAGGTATCCCTCGAAGATGTT
AAGAATGAATCCAACTGTGGTGAATCTGGAAAAATCTTGCGAAGTCAACG
TCCTCTTCAAACAATGGGTTGGTACCAACCTCATGAGTTAGCTGGTATTG
TTCCTGATGACGTTGTGAGGGCTTTCCAACATGAACAAATACTTTCTAGA
AGAGAGTGTAGAAAGAAAAGATATCCTAATGTTCCAGGTGCAAACAGAAA
AGAGCGAAAACAGGTATTGGAAGTTAATTCTTTAAGATATTTTGTCTTTT
CGAAGTAGAGAGTCTGTTAACttgaaggttttatttttacataattgttc
ccgtttcataccagatacatattttatatcaggacagtgttttcttattg
ttatattatgctgaaataagcaaaaaatgtttttcttttcctctttctaa
acaatcttgctccacatctgtgtcaatccaatgtaaaaatgcttgtgaat
tgaaattgatgagtaagcagactcttatttaaaaacaaaacctttaacct
gAAGTGAATGGGATTGTCAAAAAgggaaaataaatttattttcgcATTGA
CAATTTCAATGAGCTTTCACTTCTCAATGTAACTTGGGAAAATAAACTTT
CCACATTAAGAAAACGTCACATTGACGCTGTTTTCTTGGGTTGAGCTGAG
AAATTTAACATACCCGTTTAAAGTTTTTGATTAATGCAATATCGCGTCCA
ATGTGTGTCCTTTCGAGCCGAAAAATTCAACCCAGGGTTTTGTTGTCTCC
CCTTTTCCTCAGGTGTTTTGAGATGTCTctattttttcgatttcaacAGA
ACCTTAACCGACAatccaacaaaatttttaacGAATTCGTTGAACAATAT
TGCGTTGAAAACAACATCGACCAGATGAAACtcctcgaaaacgaaagtga
acgTAAAGAAATGGTAATcgaaaacaaagtcaaaaatCCTCGTCGTGAAA
AAATGGCATGCGCAATGAAAATCGGATCATTCGATATGGAGAAATTCCCA
AGAAGTAAAGAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAAC
AAGAAATCTTTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAG
AAGCTCTATGTAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGATG
TCAAAACGCgtaagaatttattttgttatcttGTTCACgacaacaaaatt
taaaatactaTGTGAGCTATGAAGGctattctattgtttttaacAAGTTC
CAAGGGAGGAAGTACAAGTTGAACTAACGATGAGAGATAGTGAATTTTTA
CTGAGGCTCAGCTTTAATATACTTACTCTAACTCATTTATTTTAACCCTT
TTAAgttaaaatcaacattttcttacCCATTTCTGAAAGATGAGATTGTG
AACTGTACTTAATTTATTGTAAGCTTGGCCCAATATTAAGCTTCATGTTG
TCATAAAATTATTCATATGAAAAACGGGTATATTGTTCTCTTTTGATAAC
TTCAGATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAA
GATTATTGTAATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAG
TATGAACAATAAGCGAAAAATTCCAAAGGAACGAATGGATAAACTACGAT
acgctaaaaagaaaaatcagaaattcaAAGCCAATAACAGAAAAATGAAA
CCTTCCCTTTCCAAGTCTTCTGAGGAGTCTCCAAAACGTTATTGGAACCA
ATCAAAATCGAGATCAAACCAAGATGCTGTTACCGCTTCGCCATCAACCT
CTATTTTAGCGAAGTACTCTGAAAGACGTTTCTGGACTACTGACAGATCT
CAAACCAAGATGGAATCAAcaaattttaattcaaattcaCCGAAAGAAAG
gcttgaagaaaattttgtgatACCTGAATCACAAGCTTACTCCACGGAAT
CTCACTAGCCATCAATCCTGGATCAACAAAAGCTCATTGTACAAACACGT
CCAAATTGTTCAACACTCCAAGGGCGTAGAGTGCATTCTCAACATTTTCA
GAAATCAAACCAACATTTTAATCATATCCctccccaaaatactggtttaA
ATCCAAATCTAAACACCGCTCAAATGCGACAAAGTGAAATTCGTTATGGG
CCAAGATCCCATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTAGCATT
GAACCAAGTGAAGCAATCATTGCCCGCTATGAGTCATCAACCAATTAGAC
TATTTCCTAAAGCTCCTAGATTCGCATCAAATCCTAAATGTGGTCTTGTA
TCGGTGTTTCCTAGAATGGATACTCCTCCAAGGCTTACAGTTGTTCCACG
AGCGGGGTCTAGAAATATACATCCCGCAGGATTCGAAGGTGTTGGCATTT
CACGCCCATTTTTCTCACCAAGGTTTCAGCAAGTACGACCGCTTACAATT
CAGAGATATCCACACCATCAAGTCCAGCGTGCCCACAGCTTCTCAAGAGA
GAGATGGGATAAGTACAGTTTCAatcaatattgaaaattgacggATGCGT
TCATTGGTCAAATCGACAGTTGAAAttcgtttttattgtttttagtACAT
CAATTGTTTTGgatacttttttcttttgtttgatttgtttccattttcta
ttttcagtttGTATTTTTTCTATAGAGAATCATATCCAATTCAGAACTTA
GACCTAATCGAtgaatttattattttctttctgAA Coding sequence (CDS) from alignment at sc0000527:56740..59574+ >TCONS_00025202 ID=TCONS_00025202|Name=TCONS_00025202|organism=Clytia hemisphaerica|type=CDS|length=3276bp|location=Sequence derived from alignment at sc0000527:56740..59574+ (Clytia hemisphaerica)
ATGGAAAAGATAATAAACCTTAACAACGAGCAAATTAATCAATCGAAGGT
ATCCCTCGAAGATGTTAAGAATGAATCCAACTGTGGTGAATCTGGAAAAA
TCTTGCGAAGTCAACGTCCTCTTCAAACAATGGGTTGGTACCAACCTCAT
GAGTTAGCTGGTATTGTTCCTGATGACGTTGTGAGGGCTTTCCAACATGA
ACAAATACTTTCTAGAAGAGAGTGTAGAAAGAAAAGATATCCTAATGTTC
CAGGTGCAAACAGAAAAGAGCGAAAACAGAACCTTAACCGACAatccaac
aaaatttttaacGAATTCGTTGAACAATATTGCGTTGAAAACAACATCGA
CCAGATGAAACtcctcgaaaacgaaagtgaacgTAAAGAAATGGTAATcg
aaaacaaagtcaaaaatCCTCGTCGTGAAAAAATGGCATGCGCAATGAAA
ATCGGATCATTCGATATGGAGAAATTCCCAAGAAGTAAAGAAGCTCTGGC
ATTTATGACCATGTATGATTCACGCGAAACAAGAAATCTTTTACCAAAGA
AATTTCTCGCTTTATGTGGCATCAAGCGAGAAGCTCTATGTAGAGATAAA
ATGAAGGAACTGGAAGATCCAAATATGATGTCAAAACGCATGGTCAGATG
TGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTATTGTAATAAGC
ATGGCATTGACATTACATTGTTCACTGAAAATAGTATGAACAATAAGCGA
AAAATTCCAAAGGAACGAATGGATAAACTACGATacgctaaaaagaaaaa
tcagaaattcaAAGCCAATAACAGAAAAATGAAACCTTCCCTTTCCAAGT
CTTCTGAGGAGTCTCCAAAACGTTATTGGAACCAATCAAAATCGAGATCA
AACCAAGATGCTGTTACCGCTTCGCCATCAACCTCTATTTTAGCGAAGTA
CTCTGAAAGACGTTTCTGGACTACTGACAGATCTCAAACCAAGATGGAAT
CAAcaaattttaattcaaattcaCCGAAAGAAAGgcttgaagaaaatttt
gtgatACCTGAATCACAAGCTTACTCCACGGAATCTCACTAGATGGAAAA
GATAATAAACCTTAACAACGAGCAAATTAATCAATCGAAGGTATCCCTCG
AAGATGTTAAGAATGAATCCAACTGTGGTGAATCTGGAAAAATCTTGCGA
AGTCAACGTCCTCTTCAAACAATGGGTTGGTACCAACCTCATGAGTTAGC
TGGTATTGTTCCTGATGACGTTGTGAGGGCTTTCCAACATGAACAAATAC
TTTCTAGAAGAGAGTGTAGAAAGAAAAGATATCCTAATGTTCCAGGTGCA
AACAGAAAAGAGCGAAAACAGAACCTTAACCGACAatccaacaaaatttt
taacGAATTCGTTGAACAATATTGCGTTGAAAACAACATCGACCAGATGA
AACtcctcgaaaacgaaagtgaacgTAAAGAAATGGTAATcgaaaacaaa
gtcaaaaatCCTCGTCGTGAAAAAATGGCATGCGCAATGAAAATCGGATC
ATTCGATATGGAGAAATTCCCAAGAAGTAAAGAAGCTCTGGCATTTATGA
CCATGTATGATTCACGCGAAACAAGAAATCTTTTACCAAAGAAATTTCTC
GCTTTATGTGGCATCAAGCGAGAAGCTCTATGTAGAGATAAAATGAAGGA
ACTGGAAGATCCAAATATGATGTCAAAACGCATGGTCAGATGTGAATCGT
ACAAGTTCTATAACGAACTGATAGAAGATTATTGTAATAAGCATGGCATT
GACATTACATTGTTCACTGAAAATAGTATGAACAATAAGCGAAAAATTCC
AAAGGAACGAATGGATAAACTACGATacgctaaaaagaaaaatcagaaat
tcaAAGCCAATAACAGAAAAATGAAACCTTCCCTTTCCAAGTCTTCTGAG
GAGTCTCCAAAACGTTATTGGAACCAATCAAAATCGAGATCAAACCAAGA
TGCTGTTACCGCTTCGCCATCAACCTCTATTTTAGCGAAGTACTCTGAAA
GACGTTTCTGGACTACTGACAGATCTCAAACCAAGATGGAATCAAcaaat
tttaattcaaattcaCCGAAAGAAAGgcttgaagaaaattttgtgatACC
TGAATCACAAGCTTACTCCACGGAATCTCACTAGATGGAAAAGATAATAA
ACCTTAACAACGAGCAAATTAATCAATCGAAGGTATCCCTCGAAGATGTT
AAGAATGAATCCAACTGTGGTGAATCTGGAAAAATCTTGCGAAGTCAACG
TCCTCTTCAAACAATGGGTTGGTACCAACCTCATGAGTTAGCTGGTATTG
TTCCTGATGACGTTGTGAGGGCTTTCCAACATGAACAAATACTTTCTAGA
AGAGAGTGTAGAAAGAAAAGATATCCTAATGTTCCAGGTGCAAACAGAAA
AGAGCGAAAACAGAACCTTAACCGACAatccaacaaaatttttaacGAAT
TCGTTGAACAATATTGCGTTGAAAACAACATCGACCAGATGAAACtcctc
gaaaacgaaagtgaacgTAAAGAAATGGTAATcgaaaacaaagtcaaaaa
tCCTCGTCGTGAAAAAATGGCATGCGCAATGAAAATCGGATCATTCGATA
TGGAGAAATTCCCAAGAAGTAAAGAAGCTCTGGCATTTATGACCATGTAT
GATTCACGCGAAACAAGAAATCTTTTACCAAAGAAATTTCTCGCTTTATG
TGGCATCAAGCGAGAAGCTCTATGTAGAGATAAAATGAAGGAACTGGAAG
ATCCAAATATGATGTCAAAACGCATGGTCAGATGTGAATCGTACAAGTTC
TATAACGAACTGATAGAAGATTATTGTAATAAGCATGGCATTGACATTAC
ATTGTTCACTGAAAATAGTATGAACAATAAGCGAAAAATTCCAAAGGAAC
GAATGGATAAACTACGATacgctaaaaagaaaaatcagaaattcaAAGCC
AATAACAGAAAAATGAAACCTTCCCTTTCCAAGTCTTCTGAGGAGTCTCC
AAAACGTTATTGGAACCAATCAAAATCGAGATCAAACCAAGATGCTGTTA
CCGCTTCGCCATCAACCTCTATTTTAGCGAAGTACTCTGAAAGACGTTTC
TGGACTACTGACAGATCTCAAACCAAGATGGAATCAAcaaattttaattc
aaattcaCCGAAAGAAAGgcttgaagaaaattttgtgatACCTGAATCAC
AAGCTTACTCCACGGAATCTCACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025202-exon-sc0000527-1491911889:56740..57052 | TCONS_00025202-exon-sc0000527-1491911889:56740..57052 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1510915933:56740..57052 | TCONS_00025202-exon-sc0000527-1510915933:56740..57052 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1575043694:56740..57052 | TCONS_00025202-exon-sc0000527-1575043694:56740..57052 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1491911889:57639..57998 | TCONS_00025202-exon-sc0000527-1491911889:57639..57998 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1510915933:57639..57998 | TCONS_00025202-exon-sc0000527-1510915933:57639..57998 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1575043694:57639..57998 | TCONS_00025202-exon-sc0000527-1575043694:57639..57998 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1491911889:58345..59574 | TCONS_00025202-exon-sc0000527-1491911889:58345..59574 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1510915933:58345..59574 | TCONS_00025202-exon-sc0000527-1510915933:58345..59574 | Clytia hemisphaerica | exon |
| TCONS_00025202-exon-sc0000527-1575043694:58345..59574 | TCONS_00025202-exon-sc0000527-1575043694:58345..59574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000527 | supercontig | sc0000527:56740..59574 + |
Blast
The following BLAST results are available for this feature:
|
