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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025200 ID=TCONS_00025200|Name=TCONS_00025200|organism=Clytia hemisphaerica|type=transcript|length=845bp
TAAAATTGTATTCCAAGAGTTCAACATTCATAGATATCGAGAAGTCAAGA
ACCTGttgatttgatgaaaatttacaGTTATAAAGAGTTAACATGGTTAT
TGCCAAGAACTTTCATTGAAGACTGTCATAGGAAACGAAAGATCTGGCTT
GAGCAAAAGAAAAGCGAATTGGTTGAAAATACTCCGATCACACAAAGGTT
AAAATAGAGTACAGCGCGAAGCATTCAAATACTTTAACAAGCTGATCGAA
GAGCATTGCACCCGACATAATTTTGATCTGAAATCATTTATCGAGAATAC
GAAAATTTGCTACAAGaacaacaaaagaagaaaaagaacagTAATGAAGA
ACAAATTTCATTAAATAAAAACGATCCTGAGTCAGTTTCACAGGATCTTG
ACCTTTCGGATAATATTCTAGAAGACAGTACAATTGATGAAACTCAAAAT
TAAAATGTGACTCCAAAAAGTCTTTCTGAAGGTGAAATCGTCGTGAAATT
GGAAAACAAGCctgatgaagaaaaaaccaTGTGTTCAAGCTAAAGATTTT
TCATCAACTTCGAGTGTGGAGAACGAGAAGGCTAAAAATGATACTCTCTC
AAACCCTTTAACCAGTAAACAAACTACTGCCTGCTACTGCAAGAGGTtat
caaagaaagttttaagAAGTCAAAGACCTCTTGAAGGGTCTTGAGACAAT
GGGAtattacattaaaggaagaaattttggcgaaaagaaaatttggcgga
tttggccagaatccgccaaattaaactttttgaattaatatgatctcttt
taaggtgtttttgtattgtttttgctgtttttacgccattttagg Run BLAST on NCBI transcript from alignment at sc0000527:54078..56037+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025200 ID=TCONS_00025200|Name=TCONS_00025200|organism=Clytia hemisphaerica|type=transcript|length=1960bp|location=Sequence derived from alignment at sc0000527:54078..56037+ (Clytia hemisphaerica)
TAAAATTGTATTCCAAGAGTTCAACATTCATAGATATCGAGAAGTCAAGA
ACCTGttgatttgatgaaaatttacaGTTATAAAGAGTTAACATGGTTAT
TGCCAAGAACTTTCATTGAAGACTGTCATAGGAAACGAAAGATCTGGCTT
GAGCAAAAGAAAAGCGAATTGGTTGAAAATACTCCGATCACACAAAGGTT
AAAATGTCATTTGCAACTTGTCGAAATATTAcacatttcattttttcatc
ttcatagCTGATTTGACCAACACCCATAGCGAGAAACACTGTACTCTAAT
GTGCCTAATCAACGGGCCCcgcgcttgttaatttttcNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNcccccccccccccgtttattaggcaTCTGAGAGTAT
TCCCTGGTTCCCTACTTCCATGTTCAGTCTTCCTGGAGCATAAACGGTTT
AAATTCACTACATTAAGGATTAGTGAATAAGTTTCCAGAAGATTGTCACC
AAAGTGGTATGAAatcacttttctgtttccccttatggtcaagaactttt
catcgtccccgaacgggaaatagaatttttataaaacaaagcagattttt
gtttccggATCGAGAAAAGGTTTCCAAAtagggaagtttttaattgggaa
tCTGGAAATTCGAATTAAGAAGTGATAacccggtggatttcttaaTTACC
TGGTGAATGTTATTTATTTTCCCTCCTTTACAAGAGGGACAAGATTAAAA
CTTTCCACAGGCATTTCCGGAGTGCTCAGAGGCcactttcccgatcggga
aactggTGAACTTCCCGATTTGGAAAGTCTAGTCATTTCGGGAAGTTTTA
CGCCTTaccgttcgggaaatatttcctgttaaggcaatagttgccttttC
CATGTAGTGGTCCCGACTGTTCGCCGCTTTAACgtaattttgtttgttta
ccgttcgttattttgtttttgttcgcTCAGGCATTTTCTAGTCTAATTAC
GGGTTCATGTCCATTTCTAGAGAGTACAGCGCGAAGCATTCAAATACTTT
AACAAGCTGATCGAAGAGCATTGCACCCGACATAATTTTGATCTGAAATC
ATTTATCGAGAATACGAAAATTTGCTACAAGaacaacaaaagaagaaaaa
gaacagTAATGAAGAACAAATTTCATTAAATAAAAACGATCCTGAGTCAG
TTTCACAGGATCTTGACCTTTCGGATAATATTCTAGAAGACAGTACAATT
GATGAAACTCAAAATTAAAATGTGACTCCAAAAAGTCTTTCTGAAGGTGA
AATCGTCGTGAAATTGGAAAACAAGCctgatgaagaaaaaaccaTGTGTT
CAAGCTAAAGATTTTTCATCAACTTCGAGTGTGGAGAACGAGAAGGCTAA
AAATGATACTCTCTCAAACCCTTTAACCAGTAAACAAACTACTGCCTGCT
ACTGCAAGAGGTtatcaaagaaagttttaagAAGTCAAAGACCTCTTGAA
GGGTCTTGAGACAATGGGAtattacattaaaggaagaaattttggcgaaa
agaaaatttggcggatttggccagaatccgccaaattaaactttttgaat
taatatgatctcttttaaggtgtttttgtattgtttttgctgtttttacg
ccattttagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025200-exon-sc0000527-1491911889:54078..54282 | TCONS_00025200-exon-sc0000527-1491911889:54078..54282 | Clytia hemisphaerica | exon |
| TCONS_00025200-exon-sc0000527-1510915933:54078..54282 | TCONS_00025200-exon-sc0000527-1510915933:54078..54282 | Clytia hemisphaerica | exon |
| TCONS_00025200-exon-sc0000527-1575043694:54078..54282 | TCONS_00025200-exon-sc0000527-1575043694:54078..54282 | Clytia hemisphaerica | exon |
| TCONS_00025200-exon-sc0000527-1491911889:55398..56037 | TCONS_00025200-exon-sc0000527-1491911889:55398..56037 | Clytia hemisphaerica | exon |
| TCONS_00025200-exon-sc0000527-1510915933:55398..56037 | TCONS_00025200-exon-sc0000527-1510915933:55398..56037 | Clytia hemisphaerica | exon |
| TCONS_00025200-exon-sc0000527-1575043694:55398..56037 | TCONS_00025200-exon-sc0000527-1575043694:55398..56037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000527 | supercontig | sc0000527:54078..56037 + |
Blast
The following BLAST results are available for this feature:
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