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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025199 ID=TCONS_00025199|Name=TCONS_00025199|organism=Clytia hemisphaerica|type=transcript|length=1193bp
TTCATCGATTATTTATAGGTTCAACCGCGTTTTAACTACTTTAGAGTTGG
AATACCATACAtttgatataatttttaaacaatatatCTTCTTTATAGGG
AGAAATTTCATAGACGTGTTATTTTATGTTACAGTGGAAAATAAGAAATT
GCATTACAGTACCTGGAAAATACACAGAAAATATGGAAGTTACAACAGAA
GAAACTGCATCCTCATCTGGAAAGCGAAAGTTCGATGGCGATATTACTaa
caatgaaaatgataaataattttcgaaaattccgaAATTGAACCCAACAT
CCAGTACTATGATAGACGAAAATATAGAAAGTTCGAATTCAAATTAAAAT
GCTAAGAAGACTAATCCATCTTGGAAATTGTTCTGTGATCGGAACGCTCG
GGAGTGTACACAAAATTTGAGGCTGATGGAATTATACTTGAGAATGTGTT
CCAAGCGTTTACACATGAAAGACGGCTTCATCACAGGCGTATCAAGAAAC
AAAGAATTCAGAAGGAAAAGCGACAAATCATCACAGTCACAGATGAAAAA
ATCAGAGTACAGCGCGAAGCATTCAAATACTTTAACAAGCTGATCGAAGA
GCATTGCACCCGACATAATTTTGATCTGAAATCATTTATCGAGAATACGA
AAATTTGCTACAAGaacaacaaaagaagaaaaagaacagTAATGAAGAAC
AAATTTCATTAAATAAAAACGATCCTGAGTCAGTTTCACAGGATCTTGAC
CTTTCGGATAATATTCTAGAAGACAGTACAATTGATGAAACTCAAAATTA
AAATGTGACTCCAAAAAGTCTTTCTGAAGGTGAAATCGTCGTGAAATTGG
AAAACAAGCctgatgaagaaaaaaccaTGTGTTCAAGCTAAAGATTTTTC
ATCAACTTCGAGTGTGGAGAACGAGAAGGCTAAAAATGATACTCTCTCAA
ACCCTTTAACCAGTAAACAAACTACTGCCTGCTACTGCAAGAGGTtatca
aagaaagttttaagAAGTCAAAGACCTCTTGAAGGGTCTTGAGACAATGG
GAtattacattaaaggaagaaattttggcgaaaagaaaatttggcggatt
tggccagaatccgccaaattaaactttttgaattaatatgatctctttta
aggtgtttttgtattgtttttgctgtttttacgccattttagg Run BLAST on NCBI transcript from alignment at sc0000527:52334..56037+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025199 ID=TCONS_00025199|Name=TCONS_00025199|organism=Clytia hemisphaerica|type=transcript|length=3704bp|location=Sequence derived from alignment at sc0000527:52334..56037+ (Clytia hemisphaerica)
TTCATCGATTATTTATAGGTTCAACCGCGTTTTAACTACTTTAGAGTTGG
AATACCATACAtttgatataatttttaaacaatatatCTTCTTTATAGGG
AGAAATTTCATAGACGTGTTATTTTATGTTACAGTGGAAAATAAGAAATT
GCATTACAGTACCTGGAAAATACACAGAAAATATGGAAGTTACAACAGAA
GAAACTGCATCCTCATCTGGAAAGCGAAAGTTCGATGGCGATATTACTaa
caatgaaaatgataaataattttcgaaaattccgaAATTGAACCCAACAT
CCAGTACTATGATAGACGAAAATATAGAAAGTTCGAATTCAAATTAAAAT
GCTAAGAAGACTAATCCATCTTGGAAATTGTTCTGTGATCGGAACGCTCG
GGAGTGTACACAAAATTTGAGGCTGATGGAATTATACTTGAGAATGTGTT
CCAAGCGTTTACACATGAAAGACGGCTTCATCACAGGCGTATCAAGAAAC
AAAGAATTCAGAAGGAAAAGCGACAAATCATCACAGTCACAGATGAAAAA
ATCGTAAGtttattttgccaattttaTACCATTCGAATATTATATATGAT
TCTGTCTTTTATGTTGAAAGTCTCTTTTAACAAATTCGCAGGCAATGGTG
CGGGCACATGGTCCGCTatgaatcgctcatacattttaAGTTATAATTAC
ACTGTCATATTAATATAGCCATGCAACAATGCTAACACTTTCAATCCTAT
TCAAACCTTGTATCAAAACCACACCAAGCCACACAACTTATGTAgggaat
aagtggcttcaaatcctacataccttaaaggaagaaattttggcgggaat
ttaatttggcggatggccaaaaaagttttttcagagggaatttaatttgg
cggatggacaaaaactaaatttggcgggaatttaatttggcggtcgctta
aaagtttaaccttaagatggcgtagactggagtcgtttataatgcgtgta
atactaataataccaatactaataataataataatacgggatttagttta
ctaaaattgttccattcattactttttgctttatttctactatgtataaa
ttagtcgtctagcttgctagattaaagatggcgtcaaaacagcgaaaaaa
aagcaaaaacaccttaaaagagatcatattttcaaaatgtttaatttggc
gggaatttaatttggcggatggcggaaaaaagaaattttgacgggaactt
aatttggcggttttcagtcaaatccgccaaatccgccaaattttctttcc
gccaaaatttcttcctttaaggtagtacaatgtcggtcaaaatatattgg
gaattttgattagttcctcgttttcagcaatttaaagCTCGGGCGGGCTC
GGGCGGGCTCGGGCTTCAaatcgggaggggtttatagacttccaggctat
attctgagacttattggaccattcttggacttttagCTCCTCACACCCTA
AGTCTATTAAGtctcttaagtctagcgttaaaactcagagttcatactct
acccgtccaacctaatttagagcgcttccaaatcgtttgtggttgtaaga
tttcgtgggaatttcccttttttctcaaatattatgactttgattgtaga
TTCAACCAACCTTCGACTACACCTTATTATAGCCACAATGTCTATAATAA
TTGCTCGAAAACGGACTAGAAAAAATGAAACGGCATTGCGAAAATAAAAT
TGTATTCCAAGAGTTCAACATTCATAGATATCGAGAAGTCAAGAACCTGt
tgatttgatgaaaatttacaGTTATAAAGAGTTAACATGGTTATTGCCAA
GAACTTTCATTGAAGACTGTCATAGGAAACGAAAGATCTGGCTTGAGCAA
AAGAAAAGCGAATTGGTTGAAAATACTCCGATCACACAAAGGTTAAAATG
TCATTTGCAACTTGTCGAAATATTAcacatttcattttttcatcttcata
gCTGATTTGACCAACACCCATAGCGAGAAACACTGTACTCTAATGTGCCT
AATCAACGGGCCCcgcgcttgttaatttttcNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNcccccccccccccgtttattaggcaTCTGAGAGTATTCCCTG
GTTCCCTACTTCCATGTTCAGTCTTCCTGGAGCATAAACGGTTTAAATTC
ACTACATTAAGGATTAGTGAATAAGTTTCCAGAAGATTGTCACCAAAGTG
GTATGAAatcacttttctgtttccccttatggtcaagaacttttcatcgt
ccccgaacgggaaatagaatttttataaaacaaagcagatttttgtttcc
ggATCGAGAAAAGGTTTCCAAAtagggaagtttttaattgggaatCTGGA
AATTCGAATTAAGAAGTGATAacccggtggatttcttaaTTACCTGGTGA
ATGTTATTTATTTTCCCTCCTTTACAAGAGGGACAAGATTAAAACTTTCC
ACAGGCATTTCCGGAGTGCTCAGAGGCcactttcccgatcgggaaactgg
TGAACTTCCCGATTTGGAAAGTCTAGTCATTTCGGGAAGTTTTACGCCTT
accgttcgggaaatatttcctgttaaggcaatagttgccttttCCATGTA
GTGGTCCCGACTGTTCGCCGCTTTAACgtaattttgtttgtttaccgttc
gttattttgtttttgttcgcTCAGGCATTTTCTAGTCTAATTACGGGTTC
ATGTCCATTTCTAGAGAGTACAGCGCGAAGCATTCAAATACTTTAACAAG
CTGATCGAAGAGCATTGCACCCGACATAATTTTGATCTGAAATCATTTAT
CGAGAATACGAAAATTTGCTACAAGaacaacaaaagaagaaaaagaacag
TAATGAAGAACAAATTTCATTAAATAAAAACGATCCTGAGTCAGTTTCAC
AGGATCTTGACCTTTCGGATAATATTCTAGAAGACAGTACAATTGATGAA
ACTCAAAATTAAAATGTGACTCCAAAAAGTCTTTCTGAAGGTGAAATCGT
CGTGAAATTGGAAAACAAGCctgatgaagaaaaaaccaTGTGTTCAAGCT
AAAGATTTTTCATCAACTTCGAGTGTGGAGAACGAGAAGGCTAAAAATGA
TACTCTCTCAAACCCTTTAACCAGTAAACAAACTACTGCCTGCTACTGCA
AGAGGTtatcaaagaaagttttaagAAGTCAAAGACCTCTTGAAGGGTCT
TGAGACAATGGGAtattacattaaaggaagaaattttggcgaaaagaaaa
tttggcggatttggccagaatccgccaaattaaactttttgaattaatat
gatctcttttaaggtgtttttgtattgtttttgctgtttttacgccattt
tagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025199-exon-sc0000527-1491911889:52334..52886 | TCONS_00025199-exon-sc0000527-1491911889:52334..52886 | Clytia hemisphaerica | exon |
| TCONS_00025199-exon-sc0000527-1510915933:52334..52886 | TCONS_00025199-exon-sc0000527-1510915933:52334..52886 | Clytia hemisphaerica | exon |
| TCONS_00025199-exon-sc0000527-1575043694:52334..52886 | TCONS_00025199-exon-sc0000527-1575043694:52334..52886 | Clytia hemisphaerica | exon |
| TCONS_00025199-exon-sc0000527-1491911889:55398..56037 | TCONS_00025199-exon-sc0000527-1491911889:55398..56037 | Clytia hemisphaerica | exon |
| TCONS_00025199-exon-sc0000527-1510915933:55398..56037 | TCONS_00025199-exon-sc0000527-1510915933:55398..56037 | Clytia hemisphaerica | exon |
| TCONS_00025199-exon-sc0000527-1575043694:55398..56037 | TCONS_00025199-exon-sc0000527-1575043694:55398..56037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000527 | supercontig | sc0000527:52334..56037 + |
Blast
The following BLAST results are available for this feature:
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