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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025189 ID=TCONS_00025189|Name=TCONS_00025189|organism=Clytia hemisphaerica|type=transcript|length=1811bp
CGCTTATTGACTTGAAAGAGGTTCAGCATTTTCCTAAGTTAAATctgata
ttttcaaattgttcttatttgttCTTACAATTTAACCTCTTGTTCTTGCA
agatagttcttataaaaaaggtggaAAACGTTACTGAAGCGTTCAAAAAA
CGTCATGTTAAAGATAAGTATGTTAAATTTGGTACTATGGGAGTCATATA
TACTGTAGTTCAAAATACTCACACTACCTTTCAGGCCCGGTGGAACAaac
gtaaaagtggggaggctgaaggctcaaagcccgggggtactagggttgtg
aTCCTCGGACCCTTTCCGGGACTAAAagggagaaaacaaaggaaaatttt
gtgaattttactaCCCATACCGGggcaaatttgaccaaatttgaccaaat
ttcgatctttctgggggtaaaaagttgaaattttcctatttctcctaccc
ttagtgggactgaaagttgattttcccatttttccaacccttagcaggac
tttggaaatccaaaaaaggtacccttggGTGgtacataccgtaccctcca
tttgacTGAGTAGCCCCCGGGGCTCAAAGTGAGATGAAATTCGCTagaaa
tttggggaaaaaatttctcattttctaaaaagtggggaggctgaagtctc
cccattCTCGTTGTGCCTGTTTTTACTCAAAAGTCAAATTTGATTCTATT
GAAGAGAACAAAAGTAACAAATACATAATTATGGTAAATTCTTTTTCAGG
TTGATATATTGCTTTGATTATTTATGTTTCTACTGTTTACCTCTTGTTGG
AGGCATTTGCTTTGTTTGATAAAtaaaaatacacccctgtgtcaaagaGC
CGCTGGGAACccacccactggaaaattcagccaaaatttcgtccccgtta
GGAAAAATATTCtacaatttcagtcccactgggTAATAGACTTTCATTTA
ATCCCCATTCAATCGCATTCGAAATTCAacgtaaaaaattgcactccaaa
accatccccactggattttcttaagctttgaaaaatagaatttctatcta
tagaaatttttatccctgcTGTGggaaaaagctccaccgggggTGTGAGA
CAGGGGGTTATATAGTATGCACGTACAATTCTTTAAACTAGGGCCAACAA
ATTCTAAGTTGCTTCCTATGATTGAAAACGAGACACTCTCGATACATTTG
TTTatcttaagaaaattaaaaaaaatctaagtttatTTTATAGAAGTCTG
TTATCCTCAAATCTTTATTTATCTCATAGTCTAGAGACTGGTCTAGAAAT
ATCATCTCGTTTCATGTTTTGCGCTGAGCTGACCAACAATGACCGAGTGT
TTTCGTTCACAGTCGCTGGTTTATGAATCTTGAAAATCATATCTCGAATT
TTTGCTGCTTCGTCGGCATCGGGACCGATAAATCGTCGTTCCCGAGAATG
ATGAGTATCTATATTGTCGTGTTGGCGAGTAATAAAGTCTTTAATTTTGT
GAACAGGGCGTGATACAGCACGCCCATACCGCCGGAAACCGAGACTTGTA
GATATTAAACAGCATAATATTATCAAGCAGAATTTcaacttcattttgaa
ttttcgtttAACTCTCGAAGACAAGCTCTCGAAGATAAGTTTGTAAGAAA
TAATTTGCTAAATCGTGCTGAATGTCTTCAAATGTcaccaaaaatattaa
aatgttcAATCAAATTTGCCAAAGAATTGCTCtgatccaaaattttgaaa
ttttaatcagattctttcaactttgttcttccatttatttcatgttgaaa
ttttttttatt Run BLAST on NCBI protein sequence of TCONS_00025189-protein >TCONS_00025189-protein ID=TCONS_00025189-protein|Name=TCONS_00025189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MKLKFCLIILCCLISTSLGFRRYGRAVSRPVHKIKDFITRQHDNIDTHHS
RERRFIGPDADEAAKIRDMIFKIHKPATVNENTRSLLVSSAQNMKRDDIS
RPVSRL Run BLAST on NCBI transcript from alignment at sc0000524:197370..199180 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025189 ID=TCONS_00025189|Name=TCONS_00025189|organism=Clytia hemisphaerica|type=transcript|length=1811bp|location=Sequence derived from alignment at sc0000524:197370..199180 (Clytia hemisphaerica)
aataaaaaaaatttcaacatgaaataaatggaagaacaaagttgaaagaa
tctgattaaaatttcaaaattttggatcaGAGCAATTCTTTGGCAAATTT
GATTgaacattttaatatttttggtgACATTTGAAGACATTCAGCACGAT
TTAGCAAATTATTTCTTACAAACTTATCTTCGAGAGCTTGTCTTCGAGAG
TTaaacgaaaattcaaaatgaagttgAAATTCTGCTTGATAATATTATGC
TGTTTAATATCTACAAGTCTCGGTTTCCGGCGGTATGGGCGTGCTGTATC
ACGCCCTGTTCACAAAATTAAAGACTTTATTACTCGCCAACACGACAATA
TAGATACTCATCATTCTCGGGAACGACGATTTATCGGTCCCGATGCCGAC
GAAGCAGCAAAAATTCGAGATATGATTTTCAAGATTCATAAACCAGCGAC
TGTGAACGAAAACACTCGGTCATTGTTGGTCAGCTCAGCGCAAAACATGA
AACGAGATGATATTTCTAGACCAGTCTCTAGACTATGAGATAAATAAAGA
TTTGAGGATAACAGACTTCTATAAAataaacttagattttttttaatttt
cttaagatAAACAAATGTATCGAGAGTGTCTCGTTTTCAATCATAGGAAG
CAACTTAGAATTTGTTGGCCCTAGTTTAAAGAATTGTACGTGCATACTAT
ATAACCCCCTGTCTCACAcccccggtggagctttttccCACAgcagggat
aaaaatttctatagatagaaattctatttttcaaagcttaagaaaatcca
gtggggatggttttggagtgcaattttttacgtTGAATTTCGAATGCGAT
TGAATGGGGATTAAATGAAAGTCTATTAcccagtgggactgaaattgtaG
AATATTTTTCCtaacggggacgaaattttggctgaattttccagtgggtg
gGTTCCCAGCGGCtctttgacacaggggtgtatttttaTTTATCAAACAA
AGCAAATGCCTCCAACAAGAGGTAAACAGTAGAAACATAAATAATCAAAG
CAATATATCAACCTGAAAAAGAATTTACCATAATTATGTATTTGTTACTT
TTGTTCTCTTCAATAGAATCAAATTTGACTTTTGAGTAAAAACAGGCACA
ACGAGaatggggagacttcagcctccccactttttagaaaatgagaaatt
ttttccccaaatttctAGCGAATTTCATCTCACTTTGAGCCCCGGGGGCT
ACTCAgtcaaatggagggtacggtatgtacCACccaagggtacctttttt
ggatttccaaagtcctgctaagggttggaaaaatgggaaaatcaactttc
agtcccactaagggtaggagaaataggaaaatttcaactttttaccccca
gaaagatcgaaatttggtcaaatttggtcaaatttgccCCGGTATGGGta
gtaaaattcacaaaattttcctttgttttctccctTTTAGTCCCGGAAAG
GGTCCGAGGAtcacaaccctagtacccccgggctttgagccttcagcctc
cccacttttacgttTGTTCCACCGGGCCTGAAAGGTAGTGTGAGTATTTT
GAACTACAGTATATATGACTCCCATAGTACCAAATTTAACATACTTATCT
TTAACATGACGTTTTTTGAACGCTTCAGTAACGTTTtccaccttttttat
aagaactatctTGCAAGAACAAGAGGTTAAATTGTAAGaacaaataagaa
caatttgaaaatatcagATTTAACTTAGGAAAATGCTGAACCTCTTTCAA
GTCAATAAGCG Coding sequence (CDS) from alignment at sc0000524:197370..199180 >TCONS_00025189 ID=TCONS_00025189|Name=TCONS_00025189|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000524:197370..199180 (Clytia hemisphaerica)
atgaagttgAAATTCTGCTTGATAATATTATGCTGTTTAATATCTACAAG
TCTCGGTTTCCGGCGGTATGGGCGTGCTGTATCACGCCCTGTTCACAAAA
TTAAAGACTTTATTACTCGCCAACACGACAATATAGATACTCATCATTCT
CGGGAACGACGATTTATCGGTCCCGATGCCGACGAAGCAGCAAAAATTCG
AGATATGATTTTCAAGATTCATAAACCAGCGACTGTGAACGAAAACACTC
GGTCATTGTTGGTCAGCTCAGCGCAAAACATGAAACGAGATGATATTTCT
AGACCAGTCTCTAGACTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025189-exon-sc0000524-1491911889:197370..199180 | TCONS_00025189-exon-sc0000524-1491911889:197370..199180 | Clytia hemisphaerica | exon |
| TCONS_00025189-exon-sc0000524-1510915933:197370..199180 | TCONS_00025189-exon-sc0000524-1510915933:197370..199180 | Clytia hemisphaerica | exon |
| TCONS_00025189-exon-sc0000524-1575043694:197370..199180 | TCONS_00025189-exon-sc0000524-1575043694:197370..199180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000524 | supercontig | sc0000524:197370..199180 . |
Blast
The following BLAST results are available for this feature:
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