TCONS_00025178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025178
Unique NameTCONS_00025178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025178 ID=TCONS_00025178|Name=TCONS_00025178|organism=Clytia hemisphaerica|type=transcript|length=2757bp
GAATTCCTTTTGTTACGATCCGCAAAATTGTCCAATACTGCTCACCAATA
agatattgtgtagtctaagtagtcCTTAATAATTTATCCTGCTTTATGAA
gagttgaaaagaaaacatgtctgaaataaataaattgaatCCTATGTGGC
AAGAATCTTGGGACACAAATGATACTGGTTGGCAGTTCCCCGAGGTTAAC
GTGTCATTGCAGAAGCACTTCTCTGTATTTGAGTCTGCATCCTGTGAATC
AAAAAGGATTTTTGTGCCCTTATGTGGAAAAACTCTTGACATGAAATGGC
TATATGATAAAGGTTTTAAAGTGGTTGGTGTGGAGGCCATTGAGAAGGCA
ATATTGGAATTCTTTGAAGAACAAAAAATGGAGTATTCAGTTCAACAAAT
GGAAGGGTACAAGGTATATTCTTCAAAAGATTCCAAATTGAAGATCTTCC
AAGGAAATCTATTTGATTTCAATGCTGACATGCTTGGAGGCCGTTTTGAG
TTCTTCTGGGATCGTGGAAGTCTTGTGGCAATGGAAAAAGAAGATCAGCA
AAAGTATGTTGATTTCATGGCTGGCTTATTGCATACAGGAGGATTAGGTC
TTCTGGAGGTTATGGAGTATGATTCTGGTACTGAGCCTCGTCAACCATTT
CCATTATATAAAGATGATGTTTCAAAGTTGTTTAAAAAGGACTTtgtaca
aaaagaaattgaCCGACATACGGCAACTTTTAATTATGTAACGACATTTG
TTATTtatgaaattcagaaaatttgttCCAACGGTAAACATTAAAAAGCA
TTAAGAATCATTTTGTTATTCAGATGTAATTGCAATGACAATTTGTAATT
CAGGTTTAGTGTACTGCTTTTGTGTAATCATTACTATAtgcttatttttc
aaattttggacgAAAGTTCTTTCAACTCAAAGAAGTTGATCTGTATACCC
AATTTgcttttaaaaaagtaaaatcatttaatttattttagtaatttATA
TCATTTTGCTGTTATTATTAATTTTGGGCCTTAACCAGGAGAAAGTTTTG
GTACATAAATTTACTAATTCTCCCACTTTTCCCATCAAAAACCCAAAGGT
TTGGtctaaaaaagttgtaaaaaccATAAAAGTTGTAAAATATCTTAATA
TTTTTCCCACCTCGAAAGAGGTTCCTTGAAAGTTGTGAAGATGTGAAAAA
TAGGACTTTTCCAAACTTTCCTAGCCAACAACAGTAATCATTTGGATTTG
CAAAGTTTTGGTAATTTGGTGGGAAAATGGGATCTATGATTTCATAATTA
TTCCAGACTCGGCCGAAAATTATGCGTATCATCCTCCAATAGCAATTGAA
TAAagaactttcactttcgatttcatgaAAGAATAGATTATAGCGACCAT
AAATTACGATTTTCCAAGGTcatctttacttgaaaaaaactatggaaata
ttttttatttcatgctACCATGTTGCAACCATGGGAAGTCCCCCATTTTT
ACAAACATTTACAAAGTCTTGGTTAGGAAAGTTGTAAAAGTGTGAAAGAT
TGGAAAAGTGGTAAGttttttttcccaaaactttCTCCTGAAGTTTGAGT
AGTGAAGTTTGTAGGGCTTGTATtgcttttgatttcaaattatttattat
tgCTTTTCGTATATTTTAGTATTTTATAGCACAACACCATTTTGTATGAT
TTgtttattaaataaaaattagattctatcacaaacaaaattataaaatt
ttgcaactgatgaaaataaatttttgctgtAATTTGCTTTTCAGTTGTTC
CCAAGAACCAATTAGGTGCATTTGTGTATTCTCTAAATTGATATATACTG
TATCACAacatttgttttttgtaatgaTTTACCCTGTTTTACTAAAGGGA
TTTAAACGGAAAATAATTATGTCTAATGGAAATAAGTTAAATCCTGTTTG
GCAAGAATCTTGGGACACAAATGACACTATTTGGCAATTACCTGAGGTTA
ACGTGTCTTTACAAAAGCACTTCTCAGTATTTGAGTCTGCATCCTTTGAA
TCAAAAAGGATTTTTGTGCCTTTATGTGGAAAAACAGTTGACATGAAATG
GCTGTATGATAAAGGTTTTATAGTGGTTGGTGTAGAGGCCATTGGGAAGG
CAATAGTGgaattctttgaagaaaaaaaaatggagTATTCAGTTCAACAA
ATGGAAGGGTACAAGGTATATTCTTCAAAAGATTCCAAATTGAAGGTCTT
CCAAGGAAATCTTTTTGATTTCAATGCTGACATGCTTGGAGGCCGTTTTG
AGTTTTTCTGGGATCGTGGAAGTCTTGTGGCAATGGAAAAAGAAGATCAG
CAAAAGTATGTTGATTTCATGGCTGGCGTACTATGTACTGGTGCCATTGG
TCTTCTTGAAGTCATGGAGTATGAGTCTAGTGAGCCTCAACAGCCATTCC
CGTTAAATCAAAAAGATCTTAACAAGTTATTTAGAAAGGACTTTGTCCAA
AAAGAAATTGACCGATATGAGGCAACTTTTGATTTTGTTATGACTTTGGT
CATTTATAAAGTTCAGAAAATGTGTTTCAAAGGTAAACAATGAAATAGTA
ATAATTCATTATTACCTAATTATTTGGTTTGTGTAACTCAAAGAAAATGA
TCTTTAGTATTAACGTCGCTTTAGTATCACCCATTGACGTAATTTATCTA
CTTATCTATTATCATCCCAATGTCATATTAtttatttgtaatttttgtag
ATTCTAG
Run BLAST on NCBI

transcript from alignment at sc0000524:181605..184361-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025178 ID=TCONS_00025178|Name=TCONS_00025178|organism=Clytia hemisphaerica|type=transcript|length=2757bp|location=Sequence derived from alignment at sc0000524:181605..184361- (Clytia hemisphaerica)
GAATTCCTTTTGTTACGATCCGCAAAATTGTCCAATACTGCTCACCAATA
AGATATTGTGTAGTCTAAGTAGTCCTTAATAATTTATCCTGCTTTATGAA
GAGTTGAAAAGAAAACATGTCTGAAATAAATAAATTGAATCCTATGTGGC
AAGAATCTTGGGACACAAATGATACTGGTTGGCAGTTCCCCGAGGTTAAC
GTGTCATTGCAGAAGCACTTCTCTGTATTTGAGTCTGCATCCTGTGAATC
AAAAAGGATTTTTGTGCCCTTATGTGGAAAAACTCTTGACATGAAATGGC
TATATGATAAAGGTTTTAAAGTGGTTGGTGTGGAGGCCATTGAGAAGGCA
ATATTGGAATTCTTTGAAGAACAAAAAATGGAGTATTCAGTTCAACAAAT
GGAAGGGTACAAGGTATATTCTTCAAAAGATTCCAAATTGAAGATCTTCC
AAGGAAATCTATTTGATTTCAATGCTGACATGCTTGGAGGCCGTTTTGAG
TTCTTCTGGGATCGTGGAAGTCTTGTGGCAATGGAAAAAGAAGATCAGCA
AAAGTATGTTGATTTCATGGCTGGCTTATTGCATACAGGAGGATTAGGTC
TTCTGGAGGTTATGGAGTATGATTCTGGTACTGAGCCTCGTCAACCATTT
CCATTATATAAAGATGATGTTTCAAAGTTGTTTAAAAAGGACTTTGTACA
AAAAGAAATTGACCGACATACGGCAACTTTTAATTATGTAACGACATTTG
TTATTTATGAAATTCAGAAAATTTGTTCCAACGGTAAACATTAAAAAGCA
TTAAGAATCATTTTGTTATTCAGATGTAATTGCAATGACAATTTGTAATT
CAGGTTTAGTGTACTGCTTTTGTGTAATCATTACTATATGCTTATTTTTC
AAATTTTGGACGAAAGTTCTTTCAACTCAAAGAAGTTGATCTGTATACCC
AATTTGCTTTTAAAAAAGTAAAATCATTTAATTTATTTTAGTAATTTATA
TCATTTTGCTGTTATTATTAATTTTGGGCCTTAACCAGGAGAAAGTTTTG
GTACATAAATTTACTAATTCTCCCACTTTTCCCATCAAAAACCCAAAGGT
TTGGTCTAAAAAAGTTGTAAAAACCATAAAAGTTGTAAAATATCTTAATA
TTTTTCCCACCTCGAAAGAGGTTCCTTGAAAGTTGTGAAGATGTGAAAAA
TAGGACTTTTCCAAACTTTCCTAGCCAACAACAGTAATCATTTGGATTTG
CAAAGTTTTGGTAATTTGGTGGGAAAATGGGATCTATGATTTCATAATTA
TTCCAGACTCGGCCGAAAATTATGCGTATCATCCTCCAATAGCAATTGAA
TAAAGAACTTTCACTTTCGATTTCATGAAAGAATAGATTATAGCGACCAT
AAATTACGATTTTCCAAGGTCATCTTTACTTGAAAAAAACTATGGAAATA
TTTTTTATTTCATGCTACCATGTTGCAACCATGGGAAGTCCCCCATTTTT
ACAAACATTTACAAAGTCTTGGTTAGGAAAGTTGTAAAAGTGTGAAAGAT
TGGAAAAGTGGTAAGTTTTTTTTCCCAAAACTTTCTCCTGAAGTTTGAGT
AGTGAAGTTTGTAGGGCTTGTATTGCTTTTGATTTCAAATTATTTATTAT
TGCTTTTCGTATATTTTAGTATTTTATAGCACAACACCATTTTGTATGAT
TTGTTTATTAAATAAAAATTAGATTCTATCACAAACAAAATTATAAAATT
TTGCAACTGATGAAAATAAATTTTTGCTGTAATTTGCTTTTCAGTTGTTC
CCAAGAACCAATTAGGTGCATTTGTGTATTCTCTAAATTGATATATACTG
TATCACAACATTTGTTTTTTGTAATGATTTACCCTGTTTTACTAAAGGGA
TTTAAACGGAAAATAATTATGTCTAATGGAAATAAGTTAAATCCTGTTTG
GCAAGAATCTTGGGACACAAATGACACTATTTGGCAATTACCTGAGGTTA
ACGTGTCTTTACAAAAGCACTTCTCAGTATTTGAGTCTGCATCCTTTGAA
TCAAAAAGGATTTTTGTGCCTTTATGTGGAAAAACAGTTGACATGAAATG
GCTGTATGATAAAGGTTTTATAGTGGTTGGTGTAGAGGCCATTGGGAAGG
CAATAGTGGAATTCTTTGAAGAAAAAAAAATGGAGTATTCAGTTCAACAA
ATGGAAGGGTACAAGGTATATTCTTCAAAAGATTCCAAATTGAAGGTCTT
CCAAGGAAATCTTTTTGATTTCAATGCTGACATGCTTGGAGGCCGTTTTG
AGTTTTTCTGGGATCGTGGAAGTCTTGTGGCAATGGAAAAAGAAGATCAG
CAAAAGTATGTTGATTTCATGGCTGGCGTACTATGTACTGGTGCCATTGG
TCTTCTTGAAGTCATGGAGTATGAGTCTAGTGAGCCTCAACAGCCATTCC
CGTTAAATCAAAAAGATCTTAACAAGTTATTTAGAAAGGACTTTGTCCAA
AAAGAAATTGACCGATATGAGGCAACTTTTGATTTTGTTATGACTTTGGT
CATTTATAAAGTTCAGAAAATGTGTTTCAAAGGTAAACAATGAAATAGTA
ATAATTCATTATTACCTAATTATTTGGTTTGTGTAACTCAAAGAAAATGA
TCTTTAGTATTAACGTCGCTTTAGTATCACCCATTGACGTAATTTATCTA
CTTATCTATTATCATCCCAATGTCATATTATTTATTTGTAATTTTTGTAG
ATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014140XLOC_014140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025178-exon-sc0000524-1575043694:181605..184361TCONS_00025178-exon-sc0000524-1575043694:181605..184361Clytia hemisphaericaexon
TCONS_00025178-exon-sc0000524-1510915933:181605..184361TCONS_00025178-exon-sc0000524-1510915933:181605..184361Clytia hemisphaericaexon
TCONS_00025178-exon-sc0000524-1491911889:181605..184361TCONS_00025178-exon-sc0000524-1491911889:181605..184361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000524supercontigsc0000524:181605..184361 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6767	13.0021	11.3333	14.8925	9.96013	7.79981	7.23418	6.58457	2.20758	3.16431	3.87074	2.11421	2.59118	3.05998	2.25972	1.83329	5.45812	4.07038	1.79661	1.96775	4.18516	3.82873	7.44638	6.43075	4.23699	3.16167	4.58329	2.70816	3.58158	3.60483
Blast
[Close]
BLAST of TCONS_00025178 vs. Swiss-Prot (Human)
Match: TPMT (Thiopurine S-methyltransferase OS=Homo sapiens GN=TPMT PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.648e-28
Identity = 66/184 (35.87%), Postives = 97/184 (52.72%), Query Frame = 3 
Query:  147 WQESWDTNDTGWQFPEVNVSLQKHFSVFESASCESKRIFVPLCGKTLDMKWLYDKGFKVVGVEAIEKAILEFFEEQKMEYS---VQQMEGYKVYSSKDSKLKIFQGNLFDFNADMLGGRFEFFWDRGSLVAMEKEDQQKYVDFMAXXXXXXXXXXXEVMEYDSGTEPRQPFPLYKDDVSKLFKK 689
            WQ+ W    T +   + +  L+KH   F        R+F PLCGK ++MKW  D+G  VVGVE  E  I EFF EQ + YS   + ++ G KV+ S    + ++  ++FD     + G+F+  WDRG+LVA+   D++ Y D M  LL      LL V+ YD    P  PF +   ++ +LF K
Sbjct:   29 WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGK-SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNI-GKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK 210

HSP 2 Score: 109.768 bits (273), Expect = 4.905e-26
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 2 
Query: 1949 WQESWDTNDTIWQLPEVNVSLQKHFSVFESASFESKRIFVPLCGKTVDMKWLYDKGFIVVGVEAIGKAIVEFFEEKKMEYS---VQQMEGYKVYSSKDSKLKVFQGNLFDFNADMLGGRFEFFWDRGSLVAMEKEDQQKYVDFMAGVLCTGAIGLLEVMEYESS-EPQQPFPLNQKDLNKLFRK 2488
            WQ+ W    T +   + +  L+KH   F        R+F PLCGK V+MKW  D+G  VVGVE     I EFF E+ + YS   + ++ G KV+ S    + ++  ++FD     + G+F+  WDRG+LVA+   D++ Y D M  +L      LL V+ Y+ +  P  PF +   ++ +LF K
Sbjct:   29 WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGK-SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNI-GKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK 210
The following BLAST results are available for this feature:
BLAST of TCONS_00025178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPMT4.648e-2835.87Thiopurine S-methyltransferase OS=Homo sapiens GN=... [more]
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