TCONS_00025166 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00025166
Unique Name	TCONS_00025166
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2721

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000524:52897..57325+
coding sequence from alignment at sc0000524:52897..57325+

transcript sequence

>TCONS_00025166 ID=TCONS_00025166|Name=TCONS_00025166|organism=Clytia hemisphaerica|type=transcript|length=2721bp
attgaaagacTCAAACTACAAAAGGACTTGATTCTGAAAATGCAGAAGTC
AGATTTTGGACGAATTGTATCGCAGATTAAGCTAAAGAAATATTAAGAAA
CACAGAAGGGAAGAGGCAGAAAATTACAACAAGATGTTTTTGGAAATTAT
TCTAGCTGTTATCCTACCTCTGGTAATATCCGTTGTATACAACTACCTGA
AACACATTTGGAATTTACACCGTTATCCACCAGGACCTTTTCCTCTACCA
ATTATTGGAAATTTACACCATATTGCCAAAACACCTTACAAAGAATCTAA
GAAGATATCCGAGACTTATGGTTCTGTATTTTCCCTGAGTTTTGGAATCG
AGAGGGTCGTCTTCATCAATACAATTGAACCAGCTAAAGAAGCCATGTTT
AAACGTGGGGATGATTTTGCTAACAGACCTCGAAATTTATCTTTTGAAGT
GCTGTCAAGGGGCTATAAGAACATTTCCATGAGTGGCTATGGACCCTTTT
ATAAAACAATCAAGAAAATTGGACATTCTTCGCTGAGAGCTTTTGGAGAA
GGcaataagaaaattgaaaagattTGTATTCGTGAAAGCAAATCTTTGAG
AGATATTATGCTGGAAAGTGAAGAAAAGCCGGTCCAAGTCAACTATAAAT
TTGGTGTTTCAGTATTAAACGTGATGAGTGAATTGATGTTCGGTATTGTT
TTCAAACACAACGACGAGGAAGCAAACAATATCATTGACATGAGCAATAA
CATTGTCACAGGGATATCAGCATGCGATGTCGTCAACATTTGGCCTTGGT
TAAGGTTCCTTCCACTCGAAGGATACTCGTGTTTAAAGAAGGGGATTGGG
ATGAGAGATGTGCTGTATAGAGATCAGTACAAAAGACACAAGGAGACCTT
TGATGAAGAAAATTTGAGAGATGTCATGGATGGTATCATAAAGGTTTTAA
ACGATgacgaaacaaaagaaaaagctgGAATCACTGAGATCACTGAAGAT
CATGTGGAAATGCTGGTCAATGATATCTACCTTGGTGGAACTGAAACCAC
CAACAGCACTTTACAATGGATCATGATTTATTTTATACACTGGCCTCACG
TACTCCAAAAATGCTACAACGAAATCATCAAAGTCTGTGGACAAGATAGA
TACCCAGAAATCTCAGATCGACCAAATTTACATTATTTCAGAGCAACCTT
ATATGAGACATTGAGATTCTCATCTTTGGCACCATTCCTGTTTCCAAGAA
TGACAGTAAGAGATACTGAAGTTGGAGGATATCAGATACCAAAAGATACA
CAAGTCATTTTGAATGGATGGGCTATACATCATGATGAAAAACATTGGAA
AGAACCAGAGCTGTTTAATCCAGACAGATTCttagatgaagaaggTCATT
TTATACCTGGTATGAACGAAAGTTTCATGGGATTTGGAGCTGGAAAACGA
CAATGTTTTGGTGAAGCACTGGCAAAGACTCAACTATTCATTATTCTAAC
AAGATGGATCACAGATTTTACGGTCAAGGTCAGCCCTTGTAATCCGTTGC
CTAGTTTTGAAGGGACCCTGGGTGTGACGTTGACTCCGAAACCGTTCAAG
GCTGTTTTTGTACCAcgaaacaacaaaaatgaagTATAATTCGATGTTTT
TGGTAGCTGGTACTTTGcattctttgaaatcattcgaaGCTGTGTTGTAC
TTCGGAAAAAAGTGTGAATTGGAGTCATCATATTGACTCAAAAAACGTCT
TCAAGGGTTTTTGTACCATAGAacattgaaaatgtgatttatGTTTTAAA
AGATTCATTCAGGTCAACTAACAACTGTCTCAACGGTCATCTGAAGTGAC
AAGTATGAGGCTAGATGGACCTTACTTTAACATCATTTTAATATcatcag
attttcgaaaaattctgGACAAAATAAAGATACGTTTTGCTAGAAATGTA
CCTAGCTtaaaaataaattgatttaatttatatcatgtaccatattttaa
aattttatgcaGTAAAATTTGGAACTTAAAACCGTCGTGGGGGGGGACTT
AAGCAAAATAGGTTACAAGTCGCTGGTTCGGGTCACTTTCTCCAGCTCAG
AAATTATCTGACAGGGTCGCAAAATTACTGAATCTTGAATCTTATATGAA
AAGCTcgactttttttcatttcattgttcaaACAGCAGCGGAGCGTCCTT
GTCAACCATAATTACCCTGGGACTATGACCAGATTGTACTTCTTATACCT
AGGGTACTACCAACCTGCcttgcgtattatcagctttttggtGCTTGCTG
ATAGCATCAGATAAAATATTCTCTGGAGTCCATCAGTAGCGTAGATAAAA
CCTgaaatacacggggacgaggttggggcACTACCCTTAGGAGTAACAAG
GCATTAGCTACCCTTGAGGACTGTTATCTTAAGCACAGCTACATTCTATA
CATTTCACATTAGATATTTTTTAATAAGGAAATTAATGCCAGAAAGTCAT
CTCTATAATCTGGCAGGATTAGGACCTAACCTTTCCGTACAGAGGTTCTT
TCGTGGGTCTAACCCAAAACAAGCAAAAGAAATTGCAATCGGTTCGAAAA
ATTTGTCAACCTTGTCGGGGCATTTGATGATCACGTCAATTGCCAGTACG
AACCCCTACAAAACAAGACTCTTAAAaccttttcaaaaatgaaaattcga
aacttttaatgaaGATAAGTT

Run BLAST on NCBI

protein sequence of TCONS_00025166-protein

>TCONS_00025166-protein ID=TCONS_00025166-protein|Name=TCONS_00025166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
MFLEIILAVILPLVISVVYNYLKHIWNLHRYPPGPFPLPIIGNLHHIAKT
PYKESKKISETYGSVFSLSFGIERVVFINTIEPAKEAMFKRGDDFANRPR
NLSFEVLSRGYKNISMSGYGPFYKTIKKIGHSSLRAFGEGNKKIEKICIR
ESKSLRDIMLESEEKPVQVNYKFGVSVLNVMSELMFGIVFKHNDEEANNI
IDMSNNIVTGISACDVVNIWPWLRFLPLEGYSCLKKGIGMRDVLYRDQYK
RHKETFDEENLRDVMDGIIKVLNDDETKEKAGITEITEDHVEMLVNDIYL
GGTETTNSTLQWIMIYFIHWPHVLQKCYNEIIKVCGQDRYPEISDRPNLH
YFRATLYETLRFSSLAPFLFPRMTVRDTEVGGYQIPKDTQVILNGWAIHH
DEKHWKEPELFNPDRFLDEEGHFIPGMNESFMGFGAGKRQCFGEALAKTQ
LFIILTRWITDFTVKVSPCNPLPSFEGTLGVTLTPKPFKAVFVPRNNKNE
V

Run BLAST on NCBI

transcript from alignment at sc0000524:52897..57325+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00025166 ID=TCONS_00025166|Name=TCONS_00025166|organism=Clytia hemisphaerica|type=transcript|length=4429bp|location=Sequence derived from alignment at sc0000524:52897..57325+ (Clytia hemisphaerica)
attgaaagacTCAAACTACAAAAGGACTTGATTCTGAAAATGCAGAAGTC
AGATTTTGGACGAATTGTATCGCAGATTAAGCTAAAGAAATATTAAGAAA
CACAGAAGGGAAGAGGCAGAAAATTACAACAAGATGTTTTTGGAAATTAT
TCTAGCTGTTATCCTACCTCTGGTAATATCCGTTGTATACAACTACCTGA
AACACATTTGGAATTTACACCGTTATCCACCAGGACCTTTTCCTCTACCA
ATTATTGGAAATTTACACCATATTGCCAAAACACCTTACAAAGAATCTAA
GAAGATATCCGAGACTTATGGTTCTGTATTTTCCCTGAGTTTTGGAATCG
AGAGGGTCGTCTTCATCAATACAATTGAACCAGCTAAAGAAGCCATGTTT
AAACGTGGGGATGATTTTGCTAACAGACCTCGAAATTTATCTTTTGAAGT
GCTGTCAAGGGGCTATAAGAACATTTCCATGAGTGGCTATGGACCCTTTT
ATAAAACAATCAAGAAAATTGGACATTCTTCGCTGAGAGCTTTTGGAGAA
GGcaataagaaaattgaaaagattTGTATTCGTGAAAGCAAATCTTTGAG
AGATATTATGCTGGAAAGTGAAGAAAAGCCGGTCCAAGTCAACTATAAAT
TTGGTAAGTATAAATTGCAGCAAATATTATTTATATGGCATTATTATAAA
CTTATGGAGCATGTGAATTGCTTTTAGTCTAATGAAATATGCTTTTCGGG
TGTTTAATCTCAAAACTTTTGATGGTAACTTTGAATTGACTTTGAATCTT
TAAAAATAGGAGTTACTCCTGAATTTGCTTCTCTAGCACCCCTCACCTAA
GTGAAATCGTGAAAACTTTGAACGGTGAACTGAAAACCCACACACCGTCT
AAATACAGTTAGAATCGAATTCGACGTATCATTTACTTTTTGAAGCGAAG
GATAAAATTAACCTCAATTATGAAACTGTAGTAGGGTTTAATGCTGTTCA
TAATGATTGGTGTTTTCTCTCTTTGGAGGTAGGGGCGGGGGTAAAATATG
ATACCATTTCTTCCTGTAAGACCGTATTGTTCTTGAACTTTTTCCAGGTG
TTTCAGTATTAAACGTGATGAGTGAATTGATGTTCGGTATTGTTTTCAAA
CACAACGACGAGGAAGCAAACAATATCATTGACATGAGCAATAACATTGT
CACAGGGATATCAGCATGCGATGTCGTCAACATTTGGCCTTGGTTAAGGT
TCCTTCCACTCGAAGGATACTCGTGTTTAAAGAAGGGGATTGGGATGAGA
GATGTGCTGTATAGAGATCAGTACAAAAGACACAAGGAGACCTTTGATGA
AGAAAATTTGAGAGATGTCATGGATGGTATCATAAAGGTATGATATGAAG
ATGAAAATCCCTTTTTGGTTCTAAACCTAGTTATCTCATATCTGTTTTGA
AGTGAATAGAGGGCCAAACTTTTAGAAAGatgaacacccctgtctcacgg
ACTCAGTTGGGCCCccaacccactggaaaatttggttaaaatttggtccc
cggtgggaaaaatacaatgctggacaaaaggtttgtagacttctgcaata
tttgcaaaatacttcaatatcgaccaaaaacaagttcccaagaggctctg
ggtgctttccaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNcatcccctttcagacacattgaagagtca
ttttgctctatttctcatcattttttactgaaattccatttgtctacaac
cttttgtccggcattgtaccctaaaatttcagcccGACATGGAAATTGAC
ATTGGTTTTATCTTCATTCGAAAGTTCAATGTACAAAATTTGCACTACGA
AAGCGCCCCCACTGGTCTTTTGAACTTGGAACAATGGAATTATTATCCCA
TCGGGATTTTGACAGAATGTTTATCTCCACTGTGGGAGAAATTTTCACCG
GggcagagacaggggtgtttttgaCTTACGATGCCCGATTGTGAGCTCTG
AAGCCCATTAAATAATGAATATGTGAGTAAAATGAATATTCTTTCGGTAT
GACTTTTGGCATAACCAAGGTAGAGTCGAACACGCTTCGTGTTTTGTAAG
ATTTATAAACGTCACAATTATCGGATTTTGGAGACCTTTGCCTCTAAATT
GTCTCTCACTCAATCAGGTTTTAAACGATgacgaaacaaaagaaaaagct
gGAATCACTGAGATCACTGAAGATCATGTGGAAATGCTGGTCAATGATAT
CTACCTTGGTGGAACTGAAACCACCAACAGCACTTTACAATGGATCATGA
TTTATTTTATACACTGGCCTCACGTACTCCAAAAATGCTACAACGAAATC
ATCAAAGTCTGTGGACAAGATAGATACCCAGAAATCTCAGATCGACCAAA
TTTACATTATTTCAGAGCAACCTTATATGAGACATTGAGATTCTCATCTT
TGGCACCATTCCTGTTTCCAAGAATGACAGTAAGAGATACTGAAGTTGGA
GGATATCAGATACCAAAAGATACACAAGTCATTTTGAATGGATGGGCTAT
ACATCATGATGAAAAACATTGGAAAGAACCAGAGCTGTTTAATCCAGACA
GATTCttagatgaagaaggtaagaacaGAGGGTTcatatgacgtcatttg
aaaGTTAGATTCGCATTCTTTTGCGACGAATGAACGTTGAATAAAACCTA
GCCAGCATAATGGTCCACTGAATAGATCTGAAAGttccattttccttcaa
aatacaCCCTGCGAAAGAttgattttctatttttggtgtttttgcaaccc
tGTCTGGTATTTATGAAGGTTAAAAGCGAGACtttatttgttcttttttt
aggTCATTTTATACCTGGTATGAACGAAAGTTTCATGGGATTTGGAGCTG
GAAAACGACAATGTTTTGGTGAAGCACTGGCAAAGACTCAACTATTCATT
ATTCTAACAAGATGGATCACAGATTTTACGGTCAAGGTCAGCCCTTGTAA
TCCGTTGCCTAGTTTTGAAGGGACCCTGGGTGTGACGTTGACTCCGAAAC
CGTTCAAGGCTGTTTTTGTACCAcgaaacaacaaaaatgaagTATAATTC
GATGTTTTTGGTAGCTGGTACTTTGcattctttgaaatcattcgaaGCTG
TGTTGTACTTCGGAAAAAAGTGTGAATTGGAGTCATCATATTGACTCAAA
AAACGTCTTCAAGGGTTTTTGTACCATAGAacattgaaaatgtgatttat
GTTTTAAAAGATTCATTCAGGTCAACTAACAACTGTCTCAACGGTCATCT
GAAGTGACAAGTATGAGGCTAGATGGACCTTACTTTAACATCATTTTAAT
ATcatcagattttcgaaaaattctgGACAAAATAAAGATACGTTTTGCTA
GAAATGTACCTAGCTtaaaaataaattgatttaatttatatcatgtacca
tattttaaaattttatgcaGTAAAATTTGGAACTTAAAACCGTCGTGGGG
GGGGACTTAAGCAAAATAGGTTACAAGTCGCTGGTTCGGGTCACTTTCTC
CAGCTCAGAAATTATCTGACAGGGTCGCAAAATTACTGAATCTTGAATCT
TATATGAAAAGCTcgactttttttcatttcattgttcaaACAGCAGCGGA
GCGTCCTTGTCAACCATAATTACCCTGGGACTATGACCAGATTGTACTTC
TTATACCTAGGGTACTACCAACCTGCcttgcgtattatcagctttttggt
GCTTGCTGATAGCATCAGATAAAATATTCTCTGGAGTCCATCAGTAGCGT
AGATAAAACCTgaaatacacggggacgaggttggggcACTACCCTTAGGA
GTAACAAGGCATTAGCTACCCTTGAGGACTGTTATCTTAAGCACAGCTAC
ATTCTATACATTTCACATTAGATATTTTTTAATAAGGAAATTAATGCCAG
AAAGTCATCTCTATAATCTGGCAGGATTAGGACCTAACCTTTCCGTACAG
AGGTTCTTTCGTGGGTCTAACCCAAAACAAGCAAAAGAAATTGCAATCGG
TTCGAAAAATTTGTCAACCTTGTCGGGGCATTTGATGATCACGTCAATTG
CCAGTACGAACCCCTACAAAACAAGACTCTTAAAaccttttcaaaaatga
aaattcgaaacttttaatgaaGATAAGTT

Coding sequence (CDS) from alignment at sc0000524:52897..57325+

>TCONS_00025166 ID=TCONS_00025166|Name=TCONS_00025166|organism=Clytia hemisphaerica|type=CDS|length=6024bp|location=Sequence derived from alignment at sc0000524:52897..57325+ (Clytia hemisphaerica)
ATGTTTTTGGAAATTATTCTAGCTGTTATCCTACCTCTGGTAATATCCGT
TGTATACAACTACCTGAAACACATTTGGAATTTACACCGTTATCCACCAG
GACCTTTTCCTCTACCAATTATTGGAAATTTACACCATATTGCCAAAACA
CCTTACAAAGAATCTAAGAAGATATCCGAGACTTATGGTTCTGTATTTTC
CCTGAGTTTTGGAATCGAGAGGGTCGTCTTCATCAATACAATTGAACCAG
CTAAAGAAGCCATGTTTAAACGTGGGGATGATTTTGCTAACAGACCTCGA
AATTTATCTTTTGAAGTGCTGTCAAGGGGCTATAAGAACATTTCCATGAG
TGGCTATGGACCCTTTTATAAAACAATCAAGAAAATTGGACATTCTTCGC
TGAGAGCTTTTGGAGAAGGcaataagaaaattgaaaagattTGTATTCGT
GAAAGCAAATCTTTGAGAGATATTATGCTGGAAAGTGAAGAAAAGCCGGT
CCAAGTCAACTATAAATTTGGTGTTTCAGTATTAAACGTGATGAGTGAAT
TGATGTTCGGTATTGTTTTCAAACACAACGACGAGGAAGCAAACAATATC
ATTGACATGAGCAATAACATTGTCACAGGGATATCAGCATGCGATGTCGT
CAACATTTGGCCTTGGTTAAGGTTCCTTCCACTCGAAGGATACTCGTGTT
TAAAGAAGGGGATTGGGATGAGAGATGTGCTGTATAGAGATCAGTACAAA
AGACACAAGGAGACCTTTGATGAAGAAAATTTGAGAGATGTCATGGATGG
TATCATAAAGGTTTTAAACGATgacgaaacaaaagaaaaagctgGAATCA
CTGAGATCACTGAAGATCATGTGGAAATGCTGGTCAATGATATCTACCTT
GGTGGAACTGAAACCACCAACAGCACTTTACAATGGATCATGATTTATTT
TATACACTGGCCTCACGTACTCCAAAAATGCTACAACGAAATCATCAAAG
TCTGTGGACAAGATAGATACCCAGAAATCTCAGATCGACCAAATTTACAT
TATTTCAGAGCAACCTTATATGAGACATTGAGATTCTCATCTTTGGCACC
ATTCCTGTTTCCAAGAATGACAGTAAGAGATACTGAAGTTGGAGGATATC
AGATACCAAAAGATACACAAGTCATTTTGAATGGATGGGCTATACATCAT
GATGAAAAACATTGGAAAGAACCAGAGCTGTTTAATCCAGACAGATTCtt
agatgaagaaggTCATTTTATACCTGGTATGAACGAAAGTTTCATGGGAT
TTGGAGCTGGAAAACGACAATGTTTTGGTGAAGCACTGGCAAAGACTCAA
CTATTCATTATTCTAACAAGATGGATCACAGATTTTACGGTCAAGGTCAG
CCCTTGTAATCCGTTGCCTAGTTTTGAAGGGACCCTGGGTGTGACGTTGA
CTCCGAAACCGTTCAAGGCTGTTTTTGTACCAcgaaacaacaaaaatgaa
gTATAAATGTTTTTGGAAATTATTCTAGCTGTTATCCTACCTCTGGTAAT
ATCCGTTGTATACAACTACCTGAAACACATTTGGAATTTACACCGTTATC
CACCAGGACCTTTTCCTCTACCAATTATTGGAAATTTACACCATATTGCC
AAAACACCTTACAAAGAATCTAAGAAGATATCCGAGACTTATGGTTCTGT
ATTTTCCCTGAGTTTTGGAATCGAGAGGGTCGTCTTCATCAATACAATTG
AACCAGCTAAAGAAGCCATGTTTAAACGTGGGGATGATTTTGCTAACAGA
CCTCGAAATTTATCTTTTGAAGTGCTGTCAAGGGGCTATAAGAACATTTC
CATGAGTGGCTATGGACCCTTTTATAAAACAATCAAGAAAATTGGACATT
CTTCGCTGAGAGCTTTTGGAGAAGGcaataagaaaattgaaaagattTGT
ATTCGTGAAAGCAAATCTTTGAGAGATATTATGCTGGAAAGTGAAGAAAA
GCCGGTCCAAGTCAACTATAAATTTGGTGTTTCAGTATTAAACGTGATGA
GTGAATTGATGTTCGGTATTGTTTTCAAACACAACGACGAGGAAGCAAAC
AATATCATTGACATGAGCAATAACATTGTCACAGGGATATCAGCATGCGA
TGTCGTCAACATTTGGCCTTGGTTAAGGTTCCTTCCACTCGAAGGATACT
CGTGTTTAAAGAAGGGGATTGGGATGAGAGATGTGCTGTATAGAGATCAG
TACAAAAGACACAAGGAGACCTTTGATGAAGAAAATTTGAGAGATGTCAT
GGATGGTATCATAAAGGTTTTAAACGATgacgaaacaaaagaaaaagctg
GAATCACTGAGATCACTGAAGATCATGTGGAAATGCTGGTCAATGATATC
TACCTTGGTGGAACTGAAACCACCAACAGCACTTTACAATGGATCATGAT
TTATTTTATACACTGGCCTCACGTACTCCAAAAATGCTACAACGAAATCA
TCAAAGTCTGTGGACAAGATAGATACCCAGAAATCTCAGATCGACCAAAT
TTACATTATTTCAGAGCAACCTTATATGAGACATTGAGATTCTCATCTTT
GGCACCATTCCTGTTTCCAAGAATGACAGTAAGAGATACTGAAGTTGGAG
GATATCAGATACCAAAAGATACACAAGTCATTTTGAATGGATGGGCTATA
CATCATGATGAAAAACATTGGAAAGAACCAGAGCTGTTTAATCCAGACAG
ATTCttagatgaagaaggTCATTTTATACCTGGTATGAACGAAAGTTTCA
TGGGATTTGGAGCTGGAAAACGACAATGTTTTGGTGAAGCACTGGCAAAG
ACTCAACTATTCATTATTCTAACAAGATGGATCACAGATTTTACGGTCAA
GGTCAGCCCTTGTAATCCGTTGCCTAGTTTTGAAGGGACCCTGGGTGTGA
CGTTGACTCCGAAACCGTTCAAGGCTGTTTTTGTACCAcgaaacaacaaa
aatgaagTATAAATGTTTTTGGAAATTATTCTAGCTGTTATCCTACCTCT
GGTAATATCCGTTGTATACAACTACCTGAAACACATTTGGAATTTACACC
GTTATCCACCAGGACCTTTTCCTCTACCAATTATTGGAAATTTACACCAT
ATTGCCAAAACACCTTACAAAGAATCTAAGAAGATATCCGAGACTTATGG
TTCTGTATTTTCCCTGAGTTTTGGAATCGAGAGGGTCGTCTTCATCAATA
CAATTGAACCAGCTAAAGAAGCCATGTTTAAACGTGGGGATGATTTTGCT
AACAGACCTCGAAATTTATCTTTTGAAGTGCTGTCAAGGGGCTATAAGAA
CATTTCCATGAGTGGCTATGGACCCTTTTATAAAACAATCAAGAAAATTG
GACATTCTTCGCTGAGAGCTTTTGGAGAAGGcaataagaaaattgaaaag
attTGTATTCGTGAAAGCAAATCTTTGAGAGATATTATGCTGGAAAGTGA
AGAAAAGCCGGTCCAAGTCAACTATAAATTTGGTGTTTCAGTATTAAACG
TGATGAGTGAATTGATGTTCGGTATTGTTTTCAAACACAACGACGAGGAA
GCAAACAATATCATTGACATGAGCAATAACATTGTCACAGGGATATCAGC
ATGCGATGTCGTCAACATTTGGCCTTGGTTAAGGTTCCTTCCACTCGAAG
GATACTCGTGTTTAAAGAAGGGGATTGGGATGAGAGATGTGCTGTATAGA
GATCAGTACAAAAGACACAAGGAGACCTTTGATGAAGAAAATTTGAGAGA
TGTCATGGATGGTATCATAAAGGTTTTAAACGATgacgaaacaaaagaaa
aagctgGAATCACTGAGATCACTGAAGATCATGTGGAAATGCTGGTCAAT
GATATCTACCTTGGTGGAACTGAAACCACCAACAGCACTTTACAATGGAT
CATGATTTATTTTATACACTGGCCTCACGTACTCCAAAAATGCTACAACG
AAATCATCAAAGTCTGTGGACAAGATAGATACCCAGAAATCTCAGATCGA
CCAAATTTACATTATTTCAGAGCAACCTTATATGAGACATTGAGATTCTC
ATCTTTGGCACCATTCCTGTTTCCAAGAATGACAGTAAGAGATACTGAAG
TTGGAGGATATCAGATACCAAAAGATACACAAGTCATTTTGAATGGATGG
GCTATACATCATGATGAAAAACATTGGAAAGAACCAGAGCTGTTTAATCC
AGACAGATTCttagatgaagaaggTCATTTTATACCTGGTATGAACGAAA
GTTTCATGGGATTTGGAGCTGGAAAACGACAATGTTTTGGTGAAGCACTG
GCAAAGACTCAACTATTCATTATTCTAACAAGATGGATCACAGATTTTAC
GGTCAAGGTCAGCCCTTGTAATCCGTTGCCTAGTTTTGAAGGGACCCTGG
GTGTGACGTTGACTCCGAAACCGTTCAAGGCTGTTTTTGTACCAcgaaac
aacaaaaatgaagTATAAATGTTTTTGGAAATTATTCTAGCTGTTATCCT
ACCTCTGGTAATATCCGTTGTATACAACTACCTGAAACACATTTGGAATT
TACACCGTTATCCACCAGGACCTTTTCCTCTACCAATTATTGGAAATTTA
CACCATATTGCCAAAACACCTTACAAAGAATCTAAGAAGATATCCGAGAC
TTATGGTTCTGTATTTTCCCTGAGTTTTGGAATCGAGAGGGTCGTCTTCA
TCAATACAATTGAACCAGCTAAAGAAGCCATGTTTAAACGTGGGGATGAT
TTTGCTAACAGACCTCGAAATTTATCTTTTGAAGTGCTGTCAAGGGGCTA
TAAGAACATTTCCATGAGTGGCTATGGACCCTTTTATAAAACAATCAAGA
AAATTGGACATTCTTCGCTGAGAGCTTTTGGAGAAGGcaataagaaaatt
gaaaagattTGTATTCGTGAAAGCAAATCTTTGAGAGATATTATGCTGGA
AAGTGAAGAAAAGCCGGTCCAAGTCAACTATAAATTTGGTGTTTCAGTAT
TAAACGTGATGAGTGAATTGATGTTCGGTATTGTTTTCAAACACAACGAC
GAGGAAGCAAACAATATCATTGACATGAGCAATAACATTGTCACAGGGAT
ATCAGCATGCGATGTCGTCAACATTTGGCCTTGGTTAAGGTTCCTTCCAC
TCGAAGGATACTCGTGTTTAAAGAAGGGGATTGGGATGAGAGATGTGCTG
TATAGAGATCAGTACAAAAGACACAAGGAGACCTTTGATGAAGAAAATTT
GAGAGATGTCATGGATGGTATCATAAAGGTTTTAAACGATgacgaaacaa
aagaaaaagctgGAATCACTGAGATCACTGAAGATCATGTGGAAATGCTG
GTCAATGATATCTACCTTGGTGGAACTGAAACCACCAACAGCACTTTACA
ATGGATCATGATTTATTTTATACACTGGCCTCACGTACTCCAAAAATGCT
ACAACGAAATCATCAAAGTCTGTGGACAAGATAGATACCCAGAAATCTCA
GATCGACCAAATTTACATTATTTCAGAGCAACCTTATATGAGACATTGAG
ATTCTCATCTTTGGCACCATTCCTGTTTCCAAGAATGACAGTAAGAGATA
CTGAAGTTGGAGGATATCAGATACCAAAAGATACACAAGTCATTTTGAAT
GGATGGGCTATACATCATGATGAAAAACATTGGAAAGAACCAGAGCTGTT
TAATCCAGACAGATTCttagatgaagaaggTCATTTTATACCTGGTATGA
ACGAAAGTTTCATGGGATTTGGAGCTGGAAAACGACAATGTTTTGGTGAA
GCACTGGCAAAGACTCAACTATTCATTATTCTAACAAGATGGATCACAGA
TTTTACGGTCAAGGTCAGCCCTTGTAATCCGTTGCCTAGTTTTGAAGGGA
CCCTGGGTGTGACGTTGACTCCGAAACCGTTCAAGGCTGTTTTTGTACCA
cgaaacaacaaaaatgaagTATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014135	XLOC_014135	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00025166-exon-sc0000524-1491911889:52897..53549	TCONS_00025166-exon-sc0000524-1491911889:52897..53549	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1510915933:52897..53549	TCONS_00025166-exon-sc0000524-1510915933:52897..53549	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1575043694:52897..53549	TCONS_00025166-exon-sc0000524-1575043694:52897..53549	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1491911889:53994..54283	TCONS_00025166-exon-sc0000524-1491911889:53994..54283	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1510915933:53994..54283	TCONS_00025166-exon-sc0000524-1510915933:53994..54283	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1575043694:53994..54283	TCONS_00025166-exon-sc0000524-1575043694:53994..54283	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1491911889:55314..55764	TCONS_00025166-exon-sc0000524-1491911889:55314..55764	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1510915933:55314..55764	TCONS_00025166-exon-sc0000524-1510915933:55314..55764	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1575043694:55314..55764	TCONS_00025166-exon-sc0000524-1575043694:55314..55764	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1491911889:55999..57325	TCONS_00025166-exon-sc0000524-1491911889:55999..57325	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1510915933:55999..57325	TCONS_00025166-exon-sc0000524-1510915933:55999..57325	Clytia hemisphaerica	exon
TCONS_00025166-exon-sc0000524-1575043694:55999..57325	TCONS_00025166-exon-sc0000524-1575043694:55999..57325	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00025166-protein	TCONS_00025166-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000524	supercontig	sc0000524:52897..57325 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0413173	0.0799556	0.0625793	0.304737	0.105353	0.39947	0.577968	2.02324	1.53315	2.64713	1.45794	1.76588	1.64854	0.0320787	0.103276	0.233251	0.630288	5.01447	5.96996	5.39381	4.63573	1.84606	2.59112	6.08059	5.67038	0.0193659	0.0620033	0.0313515	0.0319423

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002401	Cyt_P450_E_grp-I
IPR001128	Cyt_P450
IPR017972	Cyt_P450_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0020037	heme binding
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Blast

[Close]

BLAST of TCONS_00025166 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.938e-80
Identity = 142/467 (30.41%), Postives = 256/467 (54.82%), Query Frame = 2

Query:  221 RYPPGPFPLPIIGNLHHIAKTPYKESK--KISETYGSVFSLSFGIERVVFINTIEPAKEAMFKRGDDFANRPRNLSFEVLSRGYKNISMSGYGPFYKTIKKIGHSSLRAFGEGNKKIEKICIRESKSLRDIMLESEEKPVQVNYKFGVSVLNVMSELMFGIVFKHNDEEANNIIDMSNNIVTGISACDVVNIWPWLRFLPLEGYSCLKKGIGMRDVLYRDQYKRHKETFDEENLRDVMDGIIKV-LNDDETKEKAGITE----ITEDHVEMLVNDIYLGGTETTNSTLQWIMIYFIHWPHVLQKCYNEIIKVCGQDRYPEISDRPNLHYFRATLYETLRFSSLAPFLFPRMTVRDTEVGGYQIPKDTQVILNGWAIHHDEKHWKEPELFNPDRFLDEEGHFIPGMNESFMGFGAGKRQCFGEALAKTQLFIILTRWITDFTVKVSPCNPLPSFEGTLGVTLTPKPFK 1600
            +YP     LP++G+L  + +  +  +   K+ + YG ++S+  G +  V +   + AKE + K+G DF+ RP+  + ++ S   K I+ +  G  ++  +++  ++   F +G++K+EKI  +E  +L D++     + + +++   V+V NV+S + F   +K+ D E N I + +  I+  +S   +V++ PWL+  P +    LK  + +R+ L     + +KE F  +++ +++D +++  +N D     AG  +    ++++H+   + DI+  G ETT S ++W + + +H P V +K Y EI +  G  R P ISDR  L    AT+ E LR   +AP L P     D+ +G + + K T+VI+N WA+HH+EK W +P+ F P+RFL+  G  +   + S++ FGAG R C GE LA+ +LF+I+   +  F ++V     LPS EG   V      FK
Sbjct:   26 KYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGN--AGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFK 490

The following BLAST results are available for this feature:

BLAST of TCONS_00025166 vs. Swiss-Prot (Human)

BLAST of TCONS_00025166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CP17A	3.938e-80	30.41	Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo s...	[more]

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TCONS_00025166 (transcript) - C. hemisphaerica