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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025161 ID=TCONS_00025161|Name=TCONS_00025161|organism=Clytia hemisphaerica|type=transcript|length=2016bp
CGTGCACGGGAAGGAAAAATATTActcgacaaaaaaaatttttttttgtt
acaaATTCATATCAGAATTTTCATTCCTAATGAAGTCCTATAGATCGCTG
TTGGTGACTGTATTATTACTGGTAATATCAAATCTATCACTTATATGGGC
CACCCTTTACGAGCTCGTCTCCAGCTCAAGCAAACCAACCAAAGATCCAA
TTAGAACGTATGAATCTAAGTTCGAGCAGCAGTGTATCAGTATCTGTGCC
CGATGGGACGATTGTAGAGCGTACGCTTTCACGCACGCAACGGTTAATGG
GAACTCGCTAATCCGATGTGATTTTTATGACGCTATTATCTCACTGCAAG
ATCTACAGCGCGTGGATGGAGTACGCTTCTTTATGGAGAAGAATCTTGAT
TGTAAAGATTTATATGATAGAGGGGCAAGGCAATCTGGTGTTTACATGGT
TAACTTGATGGGGCGGCAAAAGAAAGCAGTAAGGTGCAATATGGATGTTG
AGGACGGCGGCTGGCTCGTTTTTACACGTCGaacttcacaaaaaattgaa
aatttcaatcgCTTATGGAATGAATATAAAAATGGTTTTGGGAATATGGA
AACTGAATTTTGGCTTGGTAATGATTTGCTTCACGAGCTAACAAAATGGA
AACCACACCAAGTGTTTGTATGGGGCATTGGTATGAATGGTCAAGAAGGA
ATTTCGATGCATCGAGACTTTAAGGTGGGTAGCGAGGATGATGGTTATCG
TTTAACTTATGATAGAAGTTANTCCTATAGATCGCTGTTGGTGACTGTAT
TATTACTGGTAATATCAAATCTATCACTTATATGGGCCACCCTTTACGAG
CTCGTCTCCAGCTCCAGCAAACCAACCAAAGATCCAATCAGAACGTATGA
ATCTAAGTTCGAGCAACAGTGTATCAGTATCTGTGCCCGATGGGACGATT
GTAGAGCGTACGCTTTCACGCACTCAACGGTTAATGGGAACTCGCTAATC
CGATGTGATTTTTATGACGCTATTATCTCACTGCAAGATCTACAGCGCGT
GGATGGAGTACGCTTCTTTATGGAGAAGAATCTTGATTGTAAAGATTTAT
ATGATAGAGGGGCAAGGCAATCTGGTGTTTACATGGTTAACTTGATGGGG
CGGCAAAAGAAAGCAGTAAGGTGCAATATGGATGTTGAGGACGGCGGCTG
GCTCGTTTTTACACGTCGaacttcacaaaaaattgaaaatttcaatcgCT
TATGGAATGAATATAAAAATGGTTTTGGGAATATGGAAACTGAATTTTGG
CTTGGTAATGATTTGCTTCACGAGCTAACAAAATGGAAACCACACCAAGT
GTTTGTATGGGGCATTGGTATGAATGGTCAAGAAGGAATTTCGATGCATC
GAGACTTTAAGGTGGGTAGCGAGGATGATGGTTATCGTTTAACTTATGAT
AGAAGTTACATTGGACTGAAATCTTTTGAGAAACCAGGAATCCTAGATAA
AAGTCATTACAACATGCTTTTCACAACCCCGGATCGAGATCAGGATCCAT
ATACGACCACACACTGTGGTGAACGAGAAGAAAGTGGGTTTTGGTACTCC
CATTGTGGTCCTCTTAAATTATTTCGACCTACTGGGATAATTTGGAGTGG
GTTTCAAACTGGTTCAACAATCAAAGAAGTTCAAATTATGATCAAAAGAC
AAGATTGAATGTTTGTCGGAAAATAGTACATTAAGGGAACTTGCTTTAGC
GAGAACTAATTTGGCGAACagtaaaaatcttgaaatttttaatgttggtg
aaacttattttggcgaatgacaggcTAAACTGGccaattcgccaaaatta
gttctcgccaaaatagaTCCCCTTAATGTAAGCAAATTAAAGAAGAGACA
ATTTGGGTCGAGTCACCGTGTTACTGTAAGTCATACCTCATTAATTTTGA
AAACCTGGAGCTACCGTGGCTGATCTggtatttcaaagtttttagtTATT
TTGCTTTTGGCGGCCG Run BLAST on NCBI protein sequence of TCONS_00025161-protein >TCONS_00025161-protein ID=TCONS_00025161-protein|Name=TCONS_00025161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp
VHGKEKYYSTKKIFFCYKFISEFSFLMKSYRSLLVTVLLLVISNLSLIWA
TLYELVSSSSKPTKDPIRTYESKFEQQCISICARWDDCRAYAFTHATVNG
NSLIRCDFYDAIISLQDLQRVDGVRFFMEKNLDCKDLYDRGARQSGVYMV
NLMGRQKKAVRCNMDVEDGGWLVFTRRTSQKIENFNRLWNEYKNGFGNME
TEFWLGNDLLHELTKWKPHQVFVWGIGMNGQEGISMHRDFKVGSEDDGYR
LTYDRSXSYRSLLVTVLLLVISNLSLIWATLYELVSSSSKPTKDPIRTYE
SKFEQQCISICARWDDCRAYAFTHSTVNGNSLIRCDFYDAIISLQDLQRV
DGVRFFMEKNLDCKDLYDRGARQSGVYMVNLMGRQKKAVRCNMDVEDGGW
LVFTRRTSQKIENFNRLWNEYKNGFGNMETEFWLGNDLLHELTKWKPHQV
FVWGIGMNGQEGISMHRDFKVGSEDDGYRLTYDRSYIGLKSFEKPGILDK
SHYNMLFTTPDRDQDPYTTTHCGEREESGFWYSHCGPLKLFRPTGIIWSG
FQTGSTIKEVQIMIKRQD Run BLAST on NCBI transcript from alignment at sc0000521:162894..164909 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025161 ID=TCONS_00025161|Name=TCONS_00025161|organism=Clytia hemisphaerica|type=transcript|length=2016bp|location=Sequence derived from alignment at sc0000521:162894..164909 (Clytia hemisphaerica)
CGGCCGCCAAAAGCAAAATAactaaaaactttgaaataccAGATCAGCCA
CGGTAGCTCCAGGTTTTCAAAATTAATGAGGTATGACTTACAGTAACACG
GTGACTCGACCCAAATTGTCTCTTCTTTAATTTGCTTACATTAAGGGGAt
ctattttggcgagaactaattttggcgaattggCCAGTTTAgcctgtcat
tcgccaaaataagtttcaccaacattaaaaatttcaagatttttactGTT
CGCCAAATTAGTTCTCGCTAAAGCAAGTTCCCTTAATGTACTATTTTCCG
ACAAACATTCAATCTTGTCTTTTGATCATAATTTGAACTTCTTTGATTGT
TGAACCAGTTTGAAACCCACTCCAAATTATCCCAGTAGGTCGAAATAATT
TAAGAGGACCACAATGGGAGTACCAAAACCCACTTTCTTCTCGTTCACCA
CAGTGTGTGGTCGTATATGGATCCTGATCTCGATCCGGGGTTGTGAAAAG
CATGTTGTAATGACTTTTATCTAGGATTCCTGGTTTCTCAAAAGATTTCA
GTCCAATGTAACTTCTATCATAAGTTAAACGATAACCATCATCCTCGCTA
CCCACCTTAAAGTCTCGATGCATCGAAATTCCTTCTTGACCATTCATACC
AATGCCCCATACAAACACTTGGTGTGGTTTCCATTTTGTTAGCTCGTGAA
GCAAATCATTACCAAGCCAAAATTCAGTTTCCATATTCCCAAAACCATTT
TTATATTCATTCCATAAGcgattgaaattttcaattttttgtgaagttCG
ACGTGTAAAAACGAGCCAGCCGCCGTCCTCAACATCCATATTGCACCTTA
CTGCTTTCTTTTGCCGCCCCATCAAGTTAACCATGTAAACACCAGATTGC
CTTGCCCCTCTATCATATAAATCTTTACAATCAAGATTCTTCTCCATAAA
GAAGCGTACTCCATCCACGCGCTGTAGATCTTGCAGTGAGATAATAGCGT
CATAAAAATCACATCGGATTAGCGAGTTCCCATTAACCGTTGAGTGCGTG
AAAGCGTACGCTCTACAATCGTCCCATCGGGCACAGATACTGATACACTG
TTGCTCGAACTTAGATTCATACGTTCTGATTGGATCTTTGGTTGGTTTGC
TGGAGCTGGAGACGAGCTCGTAAAGGGTGGCCCATATAAGTGATAGATTT
GATATTACCAGTAATAATACAGTCACCAACAGCGATCTATAGGANTAACT
TCTATCATAAGTTAAACGATAACCATCATCCTCGCTACCCACCTTAAAGT
CTCGATGCATCGAAATTCCTTCTTGACCATTCATACCAATGCCCCATACA
AACACTTGGTGTGGTTTCCATTTTGTTAGCTCGTGAAGCAAATCATTACC
AAGCCAAAATTCAGTTTCCATATTCCCAAAACCATTTTTATATTCATTCC
ATAAGcgattgaaattttcaattttttgtgaagttCGACGTGTAAAAACG
AGCCAGCCGCCGTCCTCAACATCCATATTGCACCTTACTGCTTTCTTTTG
CCGCCCCATCAAGTTAACCATGTAAACACCAGATTGCCTTGCCCCTCTAT
CATATAAATCTTTACAATCAAGATTCTTCTCCATAAAGAAGCGTACTCCA
TCCACGCGCTGTAGATCTTGCAGTGAGATAATAGCGTCATAAAAATCACA
TCGGATTAGCGAGTTCCCATTAACCGTTGCGTGCGTGAAAGCGTACGCTC
TACAATCGTCCCATCGGGCACAGATACTGATACACTGCTGCTCGAACTTA
GATTCATACGTTCTAATTGGATCTTTGGTTGGTTTGCTTGAGCTGGAGAC
GAGCTCGTAAAGGGTGGCCCATATAAGTGATAGATTTGATATTACCAGTA
ATAATACAGTCACCAACAGCGATCTATAGGACTTCATTAGGAATGAAAAT
TCTGATATGAATttgtaacaaaaaaaaattttttttgtcgagTAATATTT
TTCCTTCCCGTGCACG Coding sequence (CDS) from alignment at sc0000521:162894..164909 >TCONS_00025161 ID=TCONS_00025161|Name=TCONS_00025161|organism=Clytia hemisphaerica|type=CDS|length=1707bp|location=Sequence derived from alignment at sc0000521:162894..164909 (Clytia hemisphaerica)
TCAATCTTGTCTTTTGATCATAATTTGAACTTCTTTGATTGTTGAACCAG
TTTGAAACCCACTCCAAATTATCCCAGTAGGTCGAAATAATTTAAGAGGA
CCACAATGGGAGTACCAAAACCCACTTTCTTCTCGTTCACCACAGTGTGT
GGTCGTATATGGATCCTGATCTCGATCCGGGGTTGTGAAAAGCATGTTGT
AATGACTTTTATCTAGGATTCCTGGTTTCTCAAAAGATTTCAGTCCAATG
TAACTTCTATCATAAGTTAAACGATAACCATCATCCTCGCTACCCACCTT
AAAGTCTCGATGCATCGAAATTCCTTCTTGACCATTCATACCAATGCCCC
ATACAAACACTTGGTGTGGTTTCCATTTTGTTAGCTCGTGAAGCAAATCA
TTACCAAGCCAAAATTCAGTTTCCATATTCCCAAAACCATTTTTATATTC
ATTCCATAAGcgattgaaattttcaattttttgtgaagttCGACGTGTAA
AAACGAGCCAGCCGCCGTCCTCAACATCCATATTGCACCTTACTGCTTTC
TTTTGCCGCCCCATCAAGTTAACCATGTAAACACCAGATTGCCTTGCCCC
TCTATCATATAAATCTTTACAATCAAGATTCTTCTCCATAAAGAAGCGTA
CTCCATCCACGCGCTGTAGATCTTGCAGTGAGATAATAGCGTCATAAAAA
TCACATCGGATTAGCGAGTTCCCATTAACCGTTGAGTGCGTGAAAGCGTA
CGCTCTACAATCGTCCCATCGGGCACAGATACTGATACACTGTTGCTCGA
ACTTAGATTCATACGTTCTGATTGGATCTTTGGTTGGTTTGCTGGAGCTG
GAGACGAGCTCGTAAAGGGTGGCCCATATAAGTGATAGATTTGATATTAC
CAGTAATAATACAGTCACCAACAGCGATCTATAGGANTAACTTCTATCAT
AAGTTAAACGATAACCATCATCCTCGCTACCCACCTTAAAGTCTCGATGC
ATCGAAATTCCTTCTTGACCATTCATACCAATGCCCCATACAAACACTTG
GTGTGGTTTCCATTTTGTTAGCTCGTGAAGCAAATCATTACCAAGCCAAA
ATTCAGTTTCCATATTCCCAAAACCATTTTTATATTCATTCCATAAGcga
ttgaaattttcaattttttgtgaagttCGACGTGTAAAAACGAGCCAGCC
GCCGTCCTCAACATCCATATTGCACCTTACTGCTTTCTTTTGCCGCCCCA
TCAAGTTAACCATGTAAACACCAGATTGCCTTGCCCCTCTATCATATAAA
TCTTTACAATCAAGATTCTTCTCCATAAAGAAGCGTACTCCATCCACGCG
CTGTAGATCTTGCAGTGAGATAATAGCGTCATAAAAATCACATCGGATTA
GCGAGTTCCCATTAACCGTTGCGTGCGTGAAAGCGTACGCTCTACAATCG
TCCCATCGGGCACAGATACTGATACACTGCTGCTCGAACTTAGATTCATA
CGTTCTAATTGGATCTTTGGTTGGTTTGCTTGAGCTGGAGACGAGCTCGT
AAAGGGTGGCCCATATAAGTGATAGATTTGATATTACCAGTAATAATACA
GTCACCAACAGCGATCTATAGGACTTCATTAGGAATGAAAATTCTGATAT
GAATttgtaacaaaaaaaaattttttttgtcgagTAATATTTTTCCTTCC
CGTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025161-exon-sc0000521-1491911889:162894..164909 | TCONS_00025161-exon-sc0000521-1491911889:162894..164909 | Clytia hemisphaerica | exon |
| TCONS_00025161-exon-sc0000521-1510915933:162894..164909 | TCONS_00025161-exon-sc0000521-1510915933:162894..164909 | Clytia hemisphaerica | exon |
| TCONS_00025161-exon-sc0000521-1575043694:162894..164909 | TCONS_00025161-exon-sc0000521-1575043694:162894..164909 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000521 | supercontig | sc0000521:162894..164909 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00025161 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 5.468e-24 Identity = 70/214 (32.71%), Postives = 108/214 (50.47%), Query Frame = 2
Query: 1085 DCKDLYDRGARQSGVYMVNLMGRQKKAVRCNMDVEDGGWLVFTRRTSQKIENFNRLWNEYKNGFGNMETEFWLGNDLLHELTKWKPHQVFVWGIGMNGQEGISMHRDFKVGSEDDGYRLTYDRSYIGLKSFEKPGILDKSHYNMLFTTPDRDQDPYTTTHCGEREESGFWYSHC-----GPLKLFRP-----TGIIWS---GFQTGSTIKEVQI 1687
+CKDL DRG SG + + L + V C+MD + GGW VF RR ++ F R W YK GFG+ EFWLGND +H LT ++ V + G + ++ FKV E + Y+L +++G + G H N F+T D+D D ++++C E+ + +WY+ C L L P GI WS G++ + E+++
Sbjct: 117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVD-FYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLG-AFVGGSA----GNSLTGHNNNFFSTKDQDND-VSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKV 323 HSP 2 Score: 85.1149 bits (209), Expect = 8.462e-18 Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 2
Query: 398 DCKDLYDRGARQSGVYMVNLMGRQKKAVRCNMDVEDGGWLVFTRRTSQKIENFNRLWNEYKNGFGNMETEFWLGNDLLHELTKWKPHQVFVWGIGMNGQEGISMHRDFKVGSEDDGYRLT 757
+CKDL DRG SG + + L + V C+MD + GGW VF RR ++ F R W YK GFG+ EFWLGND +H LT ++ V + G + ++ FKV E + Y+L
Sbjct: 117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVD-FYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLV 235
The following BLAST results are available for this feature:
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