TCONS_00025159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025159
Unique NameTCONS_00025159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025159 ID=TCONS_00025159|Name=TCONS_00025159|organism=Clytia hemisphaerica|type=transcript|length=348bp
TTTTATcattaattaaattttttattctgTATCTAATTTTAATCTAAATC
TCTGGTAATCTCTGTTAGCCAGAAATCATGTAAATACCACCTCAGTTTGT
ACAGACTTCATTACTTGACAAAGACAAACGTCGAAATATTGTACACGTGT
GTGTGTTTTTTCTGTGAAGCTAATTTTAATCTAAAgtattgtttttgtat
ttttgaattatgtaagttatttaaacatgtaaaagcATAAAATCCTTTTC
TCGAATGAAAATGGACAGGGAAAATCTTCAGCGCATGAAAGCGTTTTATc
attaattaaattttttattctgtatctaatttttttaaagtattgttt
Run BLAST on NCBI

transcript from alignment at sc0000521:160525..160872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025159 ID=TCONS_00025159|Name=TCONS_00025159|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at sc0000521:160525..160872 (Clytia hemisphaerica)
aaacaatactttaaaaaaattagatacagaataaaaaatttaattaatgA
TAAAACGCTTTCATGCGCTGAAGATTTTCCCTGTCCATTTTCATTCGAGA
AAAGGATTTTATgcttttacatgtttaaataacttacataattcaaaaat
acaaaaacaatacTTTAGATTAAAATTAGCTTCACAGAAAAAACACACAC
ACGTGTACAATATTTCGACGTTTGTCTTTGTCAAGTAATGAAGTCTGTAC
AAACTGAGGTGGTATTTACATGATTTCTGGCTAACAGAGATTACCAGAGA
TTTAGATTAAAATTAGATAcagaataaaaaatttaattaatgATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014128XLOC_014128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025159-exon-sc0000521-1491911889:160525..160872TCONS_00025159-exon-sc0000521-1491911889:160525..160872Clytia hemisphaericaexon
TCONS_00025159-exon-sc0000521-1510915933:160525..160872TCONS_00025159-exon-sc0000521-1510915933:160525..160872Clytia hemisphaericaexon
TCONS_00025159-exon-sc0000521-1575043694:160525..160872TCONS_00025159-exon-sc0000521-1575043694:160525..160872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000521supercontigsc0000521:160525..160872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.9898	0.995577	2.29224	1.93423	0.344199	0.373706	0.65629	1.84323	0	0	0	0.958972	2.71164	1.05771	0.869585	0.466599	0	0	1.3566	2.55526	0.0761193	0.833596	0.877942	0	0.274035	1.69763	0.699956	0.373506	0.96162	0.577257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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