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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025158 ID=TCONS_00025158|Name=TCONS_00025158|organism=Clytia hemisphaerica|type=transcript|length=2829bp
ggaaaaagtagtgaaaaaattgtgcgattagctcgtaatcacatagtaac
tcgtacaattcgaaaattgcactcgtgattttttttgtttcaaattttcc
tcgtcctttcggactcggaaaattaataacaaaaaaatcactcgtgcaat
tattctcgaattgcactcattatcatgtgattacatacatgttttttctt
ttataggcataacgtttataagcatatgcaggctcagtttttggtatcta
aacaatggctctattgtttgagaacaatagaatgctaagcataatgcgag
cctgatgtaggggcagacacttgcttataaaaaaaaaaacatgtatactt
ATTCAAACATGCAAAAGCATATGATTTTTCTCTCGAATGAAAATGGacag
agaaaatctttcaaatttataaatttttataataTAATGAAAAACTTAGA
TAAATAAAATACATTGTAAATATATTGTTATGTAAATAGGGTGTAAATAC
ATTGTAATGTAAATATGGTTTAAATATATTGTAATGTAAATAGGGTGTAA
ATATATTGTAAAACACTAGTTtaatatacatgttttttcttttataagca
taacgtttataagcatatacaggCTCAGTTTTTAGTACATGAACAATGAT
GGCTCTattatttgaaaacaatagaatgctaagcataatgcgagcctgat
atagggacagacacttgcttaaaaaacatgtatatttcTCTCCAGTCatc
caaaataacaaaaaaatacttatttAATCCAATTTCAACTTGCATTGCTT
ATATATGCAACCTCTGTTTTACAGACTCGGTGGGACTCCTCCCTACTGGA
AAACTTTTCTGGAAATTCATCCTGAGGCAAGGCCAATTCAATTtgtttac
gggccaagctacccaaaaagagggtcggtcggtgggcgaaaaaataaaaa
tgagagtAGAATTTCACTCAAATAATcacctaaaaaggcagcaaagatta
ctacatcttgacaaaaatgtgaAACATAAAATAAAAGGACACAAAAACct
tgataaaatgaaaaattgaacataggATTCTCAAGCCATtggaaaaatta
ccaaaattttgaaaatttgactgtctttaaagcaatgaaataaaaatgtt
ctactacaaaatcattttcatttcgATTTTTGGGTCAGTTGTGCCCacaa
aacaactaatcaaatagGTCTCGTTTAAGTAAGAAGAAAATCCGTTTCTA
TTAGAAGACTACAATCTTATTCTTAACTTGAAAAACCTTAACTCATTGGA
TTTTGAACACGTAAACAATACATTTTAAATATCAAATTCTTCTTCCCCTA
TATTGGGGGCTTCATTTTGTCCGAATTTATTACCAGGTCACTGGAGACAG
GTGGTAACATTGAAAGATTCTTGTTGCAAGAAGTCATGGTGGGATCCATT
TTTCTTTGGGTGTTGTTCAGACAAACCAGTCTAGAATTGAGCATGTTTCT
CCTAAGAAGGCACATAAAGATGTACGTTTATAAGAATGCCCCACTCCTCC
TTCTACATCTAAGAATTCTTCAACTTTATGGTCACAAATTGAATTTCCGA
GCTCATTTTCACCACTGATTGCATTTGCATTTCCACTGCTACTTGCTTGT
tcaatttctgcattttcatattCACTGTTTCCACTTCCAGCTCCACTTCC
ACTTCCGAGTTCAGTTTCTACAGTTCTGTTGTAAATTTCCGTTCCATTTT
CTTCGGTCTCGATAATTTTATTTCCACTGTTTCCATCCCTGGTTCCGTAT
CCACTTCCTCTCCCATTTCCATTTCCAGTTCCGTACCCACTTCCGCTTCC
AGCTCCATATTCACTCCCGCTCCCACTTCCGTATCCACTTCCTCTCCCAT
TTCCATTTCCAGTTCCGTACCCACTTCCGCTTCCAGCTCCATATTCACTC
CCGCTCCCACTTCCGTATCCACTTCCATTTTCCGTTTCCGTTCGGTTTGC
TCTGAACCTCTCTACTTCCTcagcttcatttttcaaaatgtttaaaaatt
cattcaaaagctCGACCGGTGACAAAGTCTCATTCAAAAAACAATTTCGC
GAATCTTTTTCACTGATCTCAACTAAATTCCCAGAGAACTCCATACTGAA
ATATTGTCGATCCAAGATATACATCATGCAATAACCAGCACCTCTCCCGC
ATCTTTTATTATCTGGATTGCAGCAGCTCCCCGTAGTCTGATCACCACCA
CATAACTCAAAAAAGACattattgattttttctttatcccAACCAATTGA
AACACCATGTTGTTCACTCTGCATCCGGTAATTTTCCGTCAAACATCTTT
TCCGTTCGGAAATGACATCGGAAGCTTTGTTCGGGTACGGAACAAACAAG
CACCCAGTCGTAAAATTGCCGATAACTGCTTTATTTGTGGTTTGATTACG
GCAATAGTCAATCGTAAAAGTATTagtattcgggtctgtaaattttgaaa
ttatgaatcCGTCGTTTTCTTCGATGCAACGATCAGCAGTGATATTTTGC
TGACCCATTGCAAAATAACTTTCAAATCCTAACCAGATGGCGAAGCCGGC
TGTTAGTGTTTTAAAAACATCCATATTCTTGATCTCGGAATCCGGCATAG
ATTTCCacaaagtaaaagtaaaaatctGATAAGGAAAGGAGATATaaatt
gttttatattttttgatgattttccaATGTGTTCAACAACTTTTATGAAG
AATTTACTTCCTAAATTTCTCTTTTCACTCTTGATGATGATACAAGATTG
TTCAACTTAGATTTCCAAGTATACTTCTG Run BLAST on NCBI protein sequence of TCONS_00025158-protein >TCONS_00025158-protein ID=TCONS_00025158-protein|Name=TCONS_00025158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
MPDSEIKNMDVFKTLTAGFAIWLGFESYFAMGQQNITADRCIEENDGFII
SKFTDPNTNTFTIDYCRNQTTNKAVIGNFTTGCLFVPYPNKASDVISERK
RCLTENYRMQSEQHGVSIGWDKEKINNVFFELCGGDQTTGSCCNPDNKRC
GRGAGYCMMYILDRQYFSMEFSGNLVEISEKDSRNCFLNETLSPVELLNE
FLNILKNEAEEVERFRANRTETENGSGYGSGSGSEYGAGSGSGYGTGNGN
GRGSGYGSGSGSEYGAGSGSGYGTGNGNGRGSGYGTRDGNSGNKIIETEE
NGTEIYNRTVETELGSGSGAGSGNSEYENAEIEQASSSGNANAISGENEL
GNSICDHKVEEFLDVEGGVGHSYKRTSLCAFLGETCSILDWFV Run BLAST on NCBI transcript from alignment at sc0000521:157386..160214 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025158 ID=TCONS_00025158|Name=TCONS_00025158|organism=Clytia hemisphaerica|type=transcript|length=2829bp|location=Sequence derived from alignment at sc0000521:157386..160214 (Clytia hemisphaerica)
CAGAAGTATACTTGGAAATCTAAGTTGAACAATCTTGTATCATCATCAAG
AGTGAAAAGAGAAATTTAGGAAGTAAATTCTTCATAAAAGTTGTTGAACA
CATtggaaaatcatcaaaaaatataaaacaatttATATCTCCTTTCCTTA
TCagatttttacttttactttgtGGAAATCTATGCCGGATTCCGAGATCA
AGAATATGGATGTTTTTAAAACACTAACAGCCGGCTTCGCCATCTGGTTA
GGATTTGAAAGTTATTTTGCAATGGGTCAGCAAAATATCACTGCTGATCG
TTGCATCGAAGAAAACGACGgattcataatttcaaaatttacagacccga
atactAATACTTTTACGATTGACTATTGCCGTAATCAAACCACAAATAAA
GCAGTTATCGGCAATTTTACGACTGGGTGCTTGTTTGTTCCGTACCCGAA
CAAAGCTTCCGATGTCATTTCCGAACGGAAAAGATGTTTGACGGAAAATT
ACCGGATGCAGAGTGAACAACATGGTGTTTCAATTGGTTgggataaagaa
aaaatcaataatGTCTTTTTTGAGTTATGTGGTGGTGATCAGACTACGGG
GAGCTGCTGCAATCCAGATAATAAAAGATGCGGGAGAGGTGCTGGTTATT
GCATGATGTATATCTTGGATCGACAATATTTCAGTATGGAGTTCTCTGGG
AATTTAGTTGAGATCAGTGAAAAAGATTCGCGAAATTGTTTTTTGAATGA
GACTTTGTCACCGGTCGagcttttgaatgaatttttaaacattttgaaaa
atgaagctgAGGAAGTAGAGAGGTTCAGAGCAAACCGAACGGAAACGGAA
AATGGAAGTGGATACGGAAGTGGGAGCGGGAGTGAATATGGAGCTGGAAG
CGGAAGTGGGTACGGAACTGGAAATGGAAATGGGAGAGGAAGTGGATACG
GAAGTGGGAGCGGGAGTGAATATGGAGCTGGAAGCGGAAGTGGGTACGGA
ACTGGAAATGGAAATGGGAGAGGAAGTGGATACGGAACCAGGGATGGAAA
CAGTGGAAATAAAATTATCGAGACCGAAGAAAATGGAACGGAAATTTACA
ACAGAACTGTAGAAACTGAACTCGGAAGTGGAAGTGGAGCTGGAAGTGGA
AACAGTGaatatgaaaatgcagaaattgaACAAGCAAGTAGCAGTGGAAA
TGCAAATGCAATCAGTGGTGAAAATGAGCTCGGAAATTCAATTTGTGACC
ATAAAGTTGAAGAATTCTTAGATGTAGAAGGAGGAGTGGGGCATTCTTAT
AAACGTACATCTTTATGTGCCTTCTTAGGAGAAACATGCTCAATTCTAGA
CTGGTTTGTCTGAACAACACCCAAAGAAAAATGGATCCCACCATGACTTC
TTGCAACAAGAATCTTTCAATGTTACCACCTGTCTCCAGTGACCTGGTAA
TAAATTCGGACAAAATGAAGCCCCCAATATAGGGGAAGAAGAATTTGATA
TTTAAAATGTATTGTTTACGTGTTCAAAATCCAATGAGTTAAGGTTTTTC
AAGTTAAGAATAAGATTGTAGTCTTCTAATAGAAACGGATTTTCTTCTTA
CTTAAACGAGACctatttgattagttgttttgtGGGCACAACTGACCCAA
AAATcgaaatgaaaatgattttgtagtagaacatttttatttcattgctt
taaagacagtcaaattttcaaaattttggtaatttttccaATGGCTTGAG
AATcctatgttcaatttttcattttatcaagGTTTTTGTGTCCTTTTATT
TTATGTTtcacatttttgtcaagatgtagtaatctttgctgcctttttag
gtgATTATTTGAGTGAAATTCTactctcatttttattttttcgcccaccg
accgaccctctttttgggtagcttggcccgtaaacaAATTGAATTGGCCT
TGCCTCAGGATGAATTTCCAGAAAAGTTTTCCAGTAGGGAGGAGTCCCAC
CGAGTCTGTAAAACAGAGGTTGCATATATAAGCAATGCAAGTTGAAATTG
GATTaaataagtatttttttgttattttggatGACTGGAGAgaaatatac
atgttttttaagcaagtgtctgtccctatatcaggctcgcattatgctta
gcattctattgttttcaaataatAGAGCCATCATTGTTCATGTACTAAAA
ACTGAGcctgtatatgcttataaacgttatgcttataaaagaaaaaacat
gtatattaAACTAGTGTTTTACAATATATTTACACCCTATTTACATTACA
ATATATTTAAACCATATTTACATTACAATGTATTTACACCCTATTTACAT
AACAATATATTTACAATGTATTTTATTTATCTAAGTTTTTCATTAtatta
taaaaatttataaatttgaaagattttctctgtCCATTTTCATTCGAGAG
AAAAATCATATGCTTTTGCATGTTTGAATaagtatacatgtttttttttt
tataagcaagtgtctgcccctacatcaggctcgcattatgcttagcattc
tattgttctcaaacaatagagccattgtttagataccaaaaactgagcct
gcatatgcttataaacgttatgcctataaaagaaaaaacatgtatgtaat
cacatgataatgagtgcaattcgagaataattgcacgagtgatttttttg
ttattaattttccgagtccgaaaggacgaggaaaatttgaaacaaaaaaa
atcacgagtgcaattttcgaattgtacgagttactatgtgattacgagct
aatcgcacaattttttcactactttttcc Coding sequence (CDS) from alignment at sc0000521:157386..160214 >TCONS_00025158 ID=TCONS_00025158|Name=TCONS_00025158|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000521:157386..160214 (Clytia hemisphaerica)
ATGCCGGATTCCGAGATCAAGAATATGGATGTTTTTAAAACACTAACAGC
CGGCTTCGCCATCTGGTTAGGATTTGAAAGTTATTTTGCAATGGGTCAGC
AAAATATCACTGCTGATCGTTGCATCGAAGAAAACGACGgattcataatt
tcaaaatttacagacccgaatactAATACTTTTACGATTGACTATTGCCG
TAATCAAACCACAAATAAAGCAGTTATCGGCAATTTTACGACTGGGTGCT
TGTTTGTTCCGTACCCGAACAAAGCTTCCGATGTCATTTCCGAACGGAAA
AGATGTTTGACGGAAAATTACCGGATGCAGAGTGAACAACATGGTGTTTC
AATTGGTTgggataaagaaaaaatcaataatGTCTTTTTTGAGTTATGTG
GTGGTGATCAGACTACGGGGAGCTGCTGCAATCCAGATAATAAAAGATGC
GGGAGAGGTGCTGGTTATTGCATGATGTATATCTTGGATCGACAATATTT
CAGTATGGAGTTCTCTGGGAATTTAGTTGAGATCAGTGAAAAAGATTCGC
GAAATTGTTTTTTGAATGAGACTTTGTCACCGGTCGagcttttgaatgaa
tttttaaacattttgaaaaatgaagctgAGGAAGTAGAGAGGTTCAGAGC
AAACCGAACGGAAACGGAAAATGGAAGTGGATACGGAAGTGGGAGCGGGA
GTGAATATGGAGCTGGAAGCGGAAGTGGGTACGGAACTGGAAATGGAAAT
GGGAGAGGAAGTGGATACGGAAGTGGGAGCGGGAGTGAATATGGAGCTGG
AAGCGGAAGTGGGTACGGAACTGGAAATGGAAATGGGAGAGGAAGTGGAT
ACGGAACCAGGGATGGAAACAGTGGAAATAAAATTATCGAGACCGAAGAA
AATGGAACGGAAATTTACAACAGAACTGTAGAAACTGAACTCGGAAGTGG
AAGTGGAGCTGGAAGTGGAAACAGTGaatatgaaaatgcagaaattgaAC
AAGCAAGTAGCAGTGGAAATGCAAATGCAATCAGTGGTGAAAATGAGCTC
GGAAATTCAATTTGTGACCATAAAGTTGAAGAATTCTTAGATGTAGAAGG
AGGAGTGGGGCATTCTTATAAACGTACATCTTTATGTGCCTTCTTAGGAG
AAACATGCTCAATTCTAGACTGGTTTGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025158-exon-sc0000521-1491911889:157386..160214 | TCONS_00025158-exon-sc0000521-1491911889:157386..160214 | Clytia hemisphaerica | exon |
| TCONS_00025158-exon-sc0000521-1510915933:157386..160214 | TCONS_00025158-exon-sc0000521-1510915933:157386..160214 | Clytia hemisphaerica | exon |
| TCONS_00025158-exon-sc0000521-1575043694:157386..160214 | TCONS_00025158-exon-sc0000521-1575043694:157386..160214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000521 | supercontig | sc0000521:157386..160214 . |
Blast
The following BLAST results are available for this feature:
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