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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025152 ID=TCONS_00025152|Name=TCONS_00025152|organism=Clytia hemisphaerica|type=transcript|length=1605bpRun BLAST on NCBI protein sequence of TCONS_00025152-protein >TCONS_00025152-protein ID=TCONS_00025152-protein|Name=TCONS_00025152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp MSLLRFNKVFTRGYAKAALRQTALFNLHEKYGGKMVPFAGWSLPVDYTDQRun BLAST on NCBI transcript from alignment at sc0000521:196713..220290- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025152 ID=TCONS_00025152|Name=TCONS_00025152|organism=Clytia hemisphaerica|type=transcript|length=23578bp|location=Sequence derived from alignment at sc0000521:196713..220290- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000521:196713..220290- >TCONS_00025152 ID=TCONS_00025152|Name=TCONS_00025152|organism=Clytia hemisphaerica|type=CDS|length=10503bp|location=Sequence derived from alignment at sc0000521:196713..220290- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025152 vs. Swiss-Prot (Human)
Match: GCST (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1) HSP 1 Score: 406.757 bits (1044), Expect = 6.692e-137 Identity = 208/376 (55.32%), Postives = 261/376 (69.41%), Query Frame = 3
Query: 318 AKAALRQTALFNLHEKYGGKMVPFAGWSLPVDYTDQTLIQSHHHTRNKTSLFDVSHMLQFKLHGKDRVKCMEELVVADIAGMAENTGGLSLFTNEKGGIRDDCIVNNAGD-CLYIVSNAGCADKIAPIMEAHVADRKSE-LDVSLEFLEDKSLVAIQGPKAAEILQKGVDTDLSVLKFMNARTLNVFGIEGCRVTRCGYTGEDGFEISVDSSSAENFVESYLNVDSDAKLAGLGARDTLRLEAGLCLYGNDIDETTTPVEATLLWTIPKRRRQERNFPGAEIILPQIKAKPDRKRVGITWNGPPIRGGASVFNPDGEEIGQVTSGCPSPTLGGNVAMAYVKKGFAKNGTPLLFKRGKKEIECQVSKMPFTPANYYN 1439
A+ LR+T L++ H +GGKMV FAGWSLPV Y D + SH HTR SLFDVSHMLQ K+ G DRVK ME LVV DIA + N G LSLFTNE GGI DD IV N + LY+VSNAGC +K +M+ V + +++ DV LE L D +L+A+QGP AA++LQ GV DL L FM + + VFG+ GCRVTRCGYTGEDG EISV + A + + L + + KLAGL ARD+LRLEAGLCLYGNDIDE TTPVE +L WT+ KRRR +FPGA++I+PQ+K + R+RVG+ G P+R + + N +G +IG VTSGCPSP+L NVAM YV +++ GT LL + +K+ VSKMPF P NYY
Sbjct: 29 AQEVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRD-SHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVL-DNALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILK-NPEVKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYT 401 The following BLAST results are available for this feature:
BLAST of TCONS_00025152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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