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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025128 ID=TCONS_00025128|Name=TCONS_00025128|organism=Clytia hemisphaerica|type=transcript|length=3035bpRun BLAST on NCBI protein sequence of Bmal >TCONS_00025128-protein ID=TCONS_00025128-protein|Name=Bmal|organism=Clytia hemisphaerica|type=polypeptide|length=670bp MEERSTEVVKKRKSKKSSPSIFTDIKDVHTARTPSRSVLSEPSKRPRSEARun BLAST on NCBI transcript from alignment at sc0000521:98188..131904- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025128 ID=TCONS_00025128|Name=TCONS_00025128|organism=Clytia hemisphaerica|type=transcript|length=33717bp|location=Sequence derived from alignment at sc0000521:98188..131904- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000521:98188..131904- >TCONS_00025128 ID=TCONS_00025128|Name=TCONS_00025128|organism=Clytia hemisphaerica|type=CDS|length=26169bp|location=Sequence derived from alignment at sc0000521:98188..131904- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025128 vs. Swiss-Prot (Human)
Match: BMAL1 (Aryl hydrocarbon receptor nuclear translocator-like protein 1 OS=Homo sapiens GN=ARNTL PE=1 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 1.156e-58 Identity = 130/392 (33.16%), Postives = 204/392 (52.04%), Query Frame = 1
Query: 646 HRQIEKRRRNNISSLINEIGSLVPMCMNATHRLDKLSMLELAVQQVRMLTRNTDE-GDSRYKPSFLSEEEMKYLI--DQNGFLLVMSCDQAHILHVSDSVSNCTSHEPTELLGRSLLDIIHPNDVDLVTSMLKPYPNLPSVGSVSMYTG------------KLITGARRSFHFRLKTTKQPAFDPAESSGSNRYSHKINGTATIPVKLTGFLKTWQXXXXXXXXXXXXXXXXXXGLDESGPSMVNGNNIPTIDPVKLAPFTCFICLVKPVDHRDQRTENGQPSDEYRHFSSKHSADAKYLSVDQMAFPISGYLPQELIGNSEYNFVHKDDIKSLSDTYRQVLASNHEEFVVSDIYRFKMKHGGMLPMRTVASSLFNPFTHELEFITHQNYVI 1776
H QIEKRRR+ ++S I+E+ SLVP C + +LDKL++L +AVQ ++ L T+ ++ YKP+FLS++E+K+LI +GFL V+ CD+ IL VS+SV ++ +L+G+SL D +HP D+ V L P + TG +L +GARRSF R+K + + S K + + + TG+LK+W GLDE G N+ +C + + + H + NG+ + + S+H+ D K++ VDQ A I YLPQEL+G S Y + H+DDI L++ +RQVL + E + ++ Y+FK+K G + +R+ S NP+T E+E+I N V+
Sbjct: 77 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYLKSWPPTKM--------------GLDEDNEPDNEGCNL-----------SCLVAIGRLHSHVVPQPVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQT--REKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVV 441 The following BLAST results are available for this feature:
BLAST of TCONS_00025128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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