TCONS_00025064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025064
Unique NameTCONS_00025064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025064 ID=TCONS_00025064|Name=TCONS_00025064|organism=Clytia hemisphaerica|type=transcript|length=169bp
gGATTTACAATGTCTGAAACTGAAGTCCCAGATTGTCCATTATGCATGGA
AACTTTCGAAATAGATGATATCAATTTCTTTCCTTGCACATGTGGATATC
AGGTGTGTCGGTTTTGCTGGCATAGAATTCGAACGGATGAAAATGGACTG
TGTCCTGCATGTAGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000520:107138..107661-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025064 ID=TCONS_00025064|Name=TCONS_00025064|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at sc0000520:107138..107661- (Clytia hemisphaerica)
GGATTTACAATGTCTGAAACTGAAGTCCCAGATGTAAGTTCCAAGAATAA
TTTTTTCCTCTTGTTTGTTCTTTCAAAAGGCATCTATATATTTTAGATGT
TTTTCAATGTACTAATGCAGCCAAGAAAAAAGATAATGACATATTTTTTT
GTTTCTTCAACACTCTCTATATTAATGTTTCTAGTGTCCATTATGCATGG
AAACTTTCGAAATAGATGATATCAATTTCTTTCCTTGCACATGTGGATAT
CAGGTTGGTATTCTTTTCAAGACAGTATTCTTTTTTTTACAATCACAAAG
CATTCAGGCATTTTCAGGAATACTGAAGTTCTAGAATTCTGCTAAATAAT
ATTTTTTGAAAATAATGTTTGCTGCCAACCAATGTGATCGTCCTCTCATG
TTTCTGCTTCGAAAAACTTAAATGTGTATTTTAAATAATTTTTCTATCAT
TCACTAGGTGTGTCGGTTTTGCTGGCATAGAATTCGAACGGATGAAAATG
GACTGTGTCCTGCATGTAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014091XLOC_014091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025064-exon-sc0000520-1575043694:107629..107661TCONS_00025064-exon-sc0000520-1575043694:107629..107661Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1575043694:107409..107477TCONS_00025064-exon-sc0000520-1575043694:107409..107477Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1575043694:107138..107204TCONS_00025064-exon-sc0000520-1575043694:107138..107204Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1510915933:107629..107661TCONS_00025064-exon-sc0000520-1510915933:107629..107661Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1510915933:107409..107477TCONS_00025064-exon-sc0000520-1510915933:107409..107477Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1510915933:107138..107204TCONS_00025064-exon-sc0000520-1510915933:107138..107204Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1491911889:107629..107661TCONS_00025064-exon-sc0000520-1491911889:107629..107661Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1491911889:107409..107477TCONS_00025064-exon-sc0000520-1491911889:107409..107477Clytia hemisphaericaexon
TCONS_00025064-exon-sc0000520-1491911889:107138..107204TCONS_00025064-exon-sc0000520-1491911889:107138..107204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000520supercontigsc0000520:107138..107661 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00025064 vs. Swiss-Prot (Human)
Match: CNOT4 (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.769e-30
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   31 DCPLCMETFEIDDINFFPCTCGYQVCRFCWHRIRTDENGLCPACRK 168
            +CPLCME  EIDDINFFPCTCGYQ+CRFCWHRIRTDENGLCPACRK
Sbjct:   13 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58
The following BLAST results are available for this feature:
BLAST of TCONS_00025064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT44.769e-3091.30CCR4-NOT transcription complex subunit 4 OS=Homo s... [more]
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