TCONS_00025057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025057
Unique NameTCONS_00025057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025057 ID=TCONS_00025057|Name=TCONS_00025057|organism=Clytia hemisphaerica|type=transcript|length=916bp
CGCCAATTTAATACATACGTCAAATCTTTCATCTATATTAAAATTTCTTA
ACTACAAGAAATGTTGTTAAGATTTTTGCCAGCCTTCTATTTACTTCTTT
ATAATTCatcatcccagctggcacacaacgttatttcaacgttcatctaa
cgttatatggacgttgtgaacgttaaataaacgttgaaacaacgttgtat
ggCAGCTGGGATGGTTGACCAGAAATCTTTTCTCAGTTCTTCATCATAAT
CATGGTTGGAAGAAAAGTTTGAACACATATGTTTTTACTGGCAGGATTGA
TCAGTAAGCTCCGTCCATTTATAGCATTATATTCATAAGCTAAGGTTGGG
GAATTGATTAAATTGAAAAGCTAAGATTTTTAATCACTCAGTTTAACCAG
CTAAAAGTAAGTAGGTTTGCGACcacagtcgagggcgacccgaaggctct
tTTTTcatatagctgtctacccgaaggtagggcgccactcctttccgtgg
atttctccacttagccttgatccgtctctttagttgctgagcatcaagca
gagaggcatcaagtaccattttaggaatctttggtatgacccggttgggg
atcgaacccacaaacttgcgcaccgtagctggatgctctaccttcatgtt
ACAGTCGCTAATCCAGCTAAAAAGTTAAACCAATGTCGTTATTCAAGTCA
TAGTTGACCAGAAATCTTGACTCAGTTCCTCTTCATCATCATGGTCAGAA
GAAAAGTTCGCAGGTGTTGGAGATCGTTGTCTTCTGTTAGAGGGGTCGAT
TAACGGTCTTCGTTCATCACTTTGGCTGATCTCCTGGGTACCACCACGGT
ATCGTAAATTGTACCAACCATAAACAATGGAATTGAGAAACCCTTGCATT
GGAGACGTCAATGCCT
Run BLAST on NCBI

transcript from alignment at sc0000520:159927..161234+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025057 ID=TCONS_00025057|Name=TCONS_00025057|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at sc0000520:159927..161234+ (Clytia hemisphaerica)
CGCCAATTTAATACATACGTCAAATCTTTCATCTATATTAAAATTTCTTA
ACTACAAGAAATGTTGTTAAGATTTTTGCCAGCCTTCTATTTACTTCTTT
ATAATTCatcatcccagctggcacacaacgttatttcaacgttcatctaa
cgttatatggacgttgtgaacgttaaataaacgttgaaacaacgttgtat
ggCAGCTGGGATGGTTGACCAGAAATCTTTTCTCAGTTCTTCATCATAAT
CATGGTTGGAAGAAAAGTTTGAACACATATGTTTTTACTGGCAGGATTGA
TCAGTAAGCTCCGTCCATTTATAGCATTATATTCATAAGCTAAGGTTGGG
GAATTGATTAAATTGAAAAGCTAAGATTTTTAATCACTCAGTTTAACCAG
CTAAAAGTAAGTAGGTTTGCGACcacagtcgagggcgacccgaaggctct
tTTTTcatatagctgtctacccgaaggtagggcgccactcctttccgtgg
atttctccacttagccttgatccgtctctttagttgctgagcatcaagca
gagaggcatcaagtaccattttaggaatctttggtatgacccggttgggg
atcgaacccacaaacttgcgcaccgtagctggatgctctaccttcatgtt
ACAGTCGCTAATCCAGCTAAAAAGGTAACGCAATGTAGTTATTCAAGTCA
TGATGAACCAGAAATATCGACTCAGTTCCTCTTCATCATCATGGTCAGAA
GAAAAGTTCGCAGGCGTTGAAACTCGTTGTCGTTTGTTGGAAGGATCGAT
CACTTAGCTCTGTCCATTTTTAGCTCTATCTTCATAAGTTATAGTCTGGG
AAATCATTTGATTGAAAAAGTTAAACCAATGTCGTTATTCAAGTCATAGT
TGACCAGAAATCTTGACTCAGTTCCTCTTCATCATCATGGTCAGAAGAAA
AGTTCGCAGGCGTTGAAACTCGTTGTCGTTTGTTGGAAGGATCGATCACT
TAGCTCTGTCCATTTTTAGCTCTATCTTCATAAGTTATAGTCTGGGAAat
catttgaatgaaaaagttaaacCAATGTCGTTATTCAAGTCATGGTTGAC
CAGAAATCTTGACTCAACTCCTCTTCATCGTCATTGTCAGAAGAAAAGTT
CGCAGGTGTTGGAGATCGTTGTCTTCTGTTAGAGGGGTCGATTAACGGTC
TTCGTTCATCACTTTGGCTGATCTCCTGGGTACCACCACGGTATCGTAAA
TTGTACCAACCATAAACAATGGAATTGAGAAACCCTTGCATTGGAGACGT
CAATGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014088XLOC_014088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025057-exon-sc0000520-1491911889:159927..160600TCONS_00025057-exon-sc0000520-1491911889:159927..160600Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1510915933:159927..160600TCONS_00025057-exon-sc0000520-1510915933:159927..160600Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1575043694:159927..160600TCONS_00025057-exon-sc0000520-1575043694:159927..160600Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1491911889:160797..160885TCONS_00025057-exon-sc0000520-1491911889:160797..160885Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1510915933:160797..160885TCONS_00025057-exon-sc0000520-1510915933:160797..160885Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1575043694:160797..160885TCONS_00025057-exon-sc0000520-1575043694:160797..160885Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1491911889:161082..161234TCONS_00025057-exon-sc0000520-1491911889:161082..161234Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1510915933:161082..161234TCONS_00025057-exon-sc0000520-1510915933:161082..161234Clytia hemisphaericaexon
TCONS_00025057-exon-sc0000520-1575043694:161082..161234TCONS_00025057-exon-sc0000520-1575043694:161082..161234Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000520supercontigsc0000520:159927..161234 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277553	5.83615e-06	0.099547	0.968266	0.0464779	0	0.42532	0	0.503199	0.44087	0	1.30268	0	1.12418	0.643188	0.273261	0	0	0	0.0589111	0	0	0	0	0.305544	0	0.0775596	0.0712922	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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