TCONS_00025053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025053
Unique NameTCONS_00025053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025053 ID=TCONS_00025053|Name=TCONS_00025053|organism=Clytia hemisphaerica|type=transcript|length=345bp
ATGCTTGATTGTAAAAACATTCTCATCATTTTCGATGGATGGGTTACCCA
GTAAATTATCATAATTTGCAGGTTTATTAGGTTTTTTTGCAAGGTTAGAA
GCAAGATTACAATAGTAATTGTTCATGTCGGAAGGTTCGTGGTTTATTTT
AGTGTTCTGCTTGGTTAAAATTCGGTCAATTGTTCTCCAGACTANNNNNN
NNNNNNNNNTGGTTTATTTTAGTGTTCTGCTTGGTTAAAATTCGGTCAAT
TGTTCTCCAGACTATCGATGGATTTTTCGAAGATAGAGCTTTCCGAAGAA
ATTCGTTTTTTAAGCTCTTTACAGATTTTTTGTATGCTTTAAGAA
Run BLAST on NCBI

transcript from alignment at sc0000517:29327..29671

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025053 ID=TCONS_00025053|Name=TCONS_00025053|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at sc0000517:29327..29671 (Clytia hemisphaerica)
TTCTTAAAGCATACAAAAAATCTGTAAAGAGCTTAAAAAACGAATTTCTT
CGGAAAGCTCTATCTTCGAAAAATCCATCGATAGTCTGGAGAACAATTGA
CCGAATTTTAACCAAGCAGAACACTAAAATAAACCANNNNNNNNNNNNNN
NTAGTCTGGAGAACAATTGACCGAATTTTAACCAAGCAGAACACTAAAAT
AAACCACGAACCTTCCGACATGAACAATTACTATTGTAATCTTGCTTCTA
ACCTTGCAAAAAAACCTAATAAACCTGCAAATTATGATAATTTACTGGGT
AACCCATCCATCGAAAATGATGAGAATGTTTTTACAATCAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014084XLOC_014084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025053-exon-sc0000517-1491911889:29327..29671TCONS_00025053-exon-sc0000517-1491911889:29327..29671Clytia hemisphaericaexon
TCONS_00025053-exon-sc0000517-1510915933:29327..29671TCONS_00025053-exon-sc0000517-1510915933:29327..29671Clytia hemisphaericaexon
TCONS_00025053-exon-sc0000517-1575043694:29327..29671TCONS_00025053-exon-sc0000517-1575043694:29327..29671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000517supercontigsc0000517:29327..29671 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782595	0.254384	0.295365	1.25977	0.923512	0.27799	0.843968	0.941944	1.17078	1.36145	1.42592	1.00994	0.346986	0.180174	0.357395	0.476891	0.606613	0.20072	1.66383	0.332442	5.1107	4.27189	1.66602	1.78576	0	0.619185	4.61001	2.27885	3.5442	3.41419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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